Wall clock time and date at job start Tue Mar 31 2020 11:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47309 * 2 1 4 4 H 1.09001 * 109.47258 * 177.82178 * 3 2 1 5 5 C 1.50704 * 109.47143 * 297.81993 * 3 2 1 6 6 H 1.07998 * 120.00243 * 119.99826 * 5 3 2 7 7 C 1.37875 * 119.99883 * 300.00214 * 5 3 2 8 8 N 1.31522 * 120.00020 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00178 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46991 * 60.00160 * 9 7 5 11 11 H 1.48504 * 109.47249 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47188 * 300.00250 * 9 7 5 13 13 N 1.46897 * 109.47723 * 57.82117 * 3 2 1 14 14 C 1.46848 * 110.99777 * 58.15507 * 13 3 2 15 15 C 1.53042 * 109.52197 * 185.84256 * 14 13 3 16 16 C 1.53124 * 109.27836 * 300.82159 * 15 14 13 17 17 N 1.46894 * 109.52086 * 177.55491 * 16 15 14 18 18 C 1.46903 * 110.99689 * 56.05310 * 17 16 15 19 19 C 1.46905 * 110.99946 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.46879 * 170.00247 * 19 17 16 21 21 C 1.38230 * 120.00119 * 269.72903 * 20 19 17 22 22 C 1.38240 * 120.00033 * 179.77315 * 21 20 19 23 23 C 1.38240 * 119.99612 * 0.50108 * 22 21 20 24 24 C 1.38228 * 120.00076 * 359.75475 * 23 22 21 25 25 C 1.38234 * 120.00412 * 359.97438 * 24 23 22 26 26 C 1.53126 * 109.15903 * 57.65652 * 16 15 14 27 27 C 1.46849 * 111.00271 * 182.37085 * 13 3 2 28 28 H 1.08999 * 109.47114 * 305.08739 * 1 2 3 29 29 H 1.09006 * 109.47258 * 65.08424 * 1 2 3 30 30 H 1.09001 * 109.47690 * 185.08643 * 1 2 3 31 31 H 1.08998 * 109.47283 * 239.99312 * 2 1 3 32 32 H 1.09005 * 109.47084 * 119.99800 * 2 1 3 33 33 H 0.97004 * 119.99701 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.45924 * 65.82869 * 14 13 3 35 35 H 1.09001 * 109.46222 * 305.85778 * 14 13 3 36 36 H 1.08996 * 109.50125 * 180.88034 * 15 14 13 37 37 H 1.09001 * 109.50303 * 60.76621 * 15 14 13 38 38 H 1.08989 * 109.52248 * 297.75034 * 16 15 14 39 39 H 1.08995 * 109.47718 * 59.99644 * 18 17 16 40 40 H 1.09001 * 109.47285 * 179.97438 * 18 17 16 41 41 H 1.09002 * 109.46792 * 299.99297 * 18 17 16 42 42 H 1.08997 * 109.47489 * 290.00380 * 19 17 16 43 43 H 1.09001 * 109.46339 * 50.00549 * 19 17 16 44 44 H 1.07999 * 120.00223 * 359.97438 * 21 20 19 45 45 H 1.07997 * 120.00278 * 180.23158 * 22 21 20 46 46 H 1.08006 * 119.99641 * 179.72677 * 23 22 21 47 47 H 1.08002 * 119.99874 * 179.97438 * 24 23 22 48 48 H 1.07996 * 120.00354 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.50359 * 62.28303 * 26 16 15 50 50 H 1.08996 * 109.50154 * 182.36812 * 26 16 15 51 51 H 1.08996 * 109.46484 * 54.14200 * 27 13 3 52 52 H 1.09001 * 109.45639 * 294.17443 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1293 1.4427 0.0391 5 6 1.5823 2.1371 -1.2566 6 1 0.9584 3.0162 -1.1911 7 6 1.9599 1.6502 -2.4900 8 7 2.7200 0.5799 -2.5699 9 14 1.3920 2.5108 -4.0477 10 1 1.8866 3.9110 -4.0480 11 1 1.9306 1.7959 -5.2327 12 1 -0.0920 2.5100 -4.1007 13 7 1.5079 2.1501 1.1722 14 6 1.8982 1.4748 2.4164 15 6 1.2091 2.1517 3.6035 16 6 1.6177 3.6267 3.6514 17 7 0.9138 4.2954 4.7537 18 6 1.1701 3.6162 6.0308 19 6 1.2833 5.7152 4.8298 20 6 0.3710 6.4203 5.8001 21 6 -0.8041 6.9940 5.3519 22 6 -1.6432 7.6367 6.2429 23 6 -1.3021 7.7147 7.5803 24 6 -0.1245 7.1456 8.0275 25 6 0.7120 6.4981 7.1376 26 6 1.2437 4.2950 2.3254 27 6 1.9318 3.5560 1.1754 28 1 -0.3633 0.5907 0.8409 29 1 -0.3634 0.4330 -0.9321 30 1 -0.3634 -1.0236 0.0911 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9854 0.2371 -3.4377 34 1 2.9793 1.5377 2.5400 35 1 1.5982 0.4279 2.3710 36 1 1.5112 1.6602 4.5283 37 1 0.1279 2.0772 3.4875 38 1 2.6939 3.7017 3.8063 39 1 2.2396 3.6282 6.2407 40 1 0.6376 4.1320 6.8300 41 1 0.8234 2.5846 5.9696 42 1 2.3148 5.8046 5.1704 43 1 1.1856 6.1693 3.8437 44 1 -1.0682 6.9373 4.3063 45 1 -2.5631 8.0817 5.8934 46 1 -1.9556 8.2207 8.2756 47 1 0.1422 7.2069 9.0723 48 1 1.6322 6.0538 7.4870 49 1 0.1631 4.2542 2.1893 50 1 1.5701 5.3349 2.3373 51 1 1.6563 4.0206 0.2287 52 1 3.0128 3.6090 1.3048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717470907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:06 Heat of formation + Delta-G solvation = 33.885638 kcal Electronic energy + Delta-G solvation = -27243.712376 eV Core-core repulsion = 23821.813804 eV Total energy + Delta-G solvation = -3421.898572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81436 -38.77974 -36.78949 -34.04837 -32.06138 -31.42353 -31.03445 -30.29567 -29.64924 -27.14418 -26.33517 -24.63859 -23.24528 -22.65377 -22.42133 -21.43056 -20.81405 -19.43349 -18.77343 -16.92219 -16.24706 -16.01795 -15.49213 -15.41894 -15.00554 -14.54094 -14.35511 -14.10959 -13.85556 -13.67731 -13.51864 -13.28952 -12.85569 -12.74509 -12.60227 -12.44974 -12.24355 -11.94983 -11.81307 -11.62085 -11.36632 -11.14398 -10.98705 -10.88504 -10.82254 -10.71867 -10.59220 -10.46258 -10.08218 -9.89237 -9.78177 -9.59221 -9.32679 -9.03951 -8.89481 -8.73006 -8.36268 -8.25455 -7.07794 -5.97853 -4.01390 1.19692 1.27432 3.33193 3.37920 3.40733 3.55764 4.12288 4.42671 4.65445 4.70463 4.85533 4.92801 4.96809 5.04660 5.19858 5.25769 5.33115 5.36064 5.36895 5.46575 5.54687 5.61447 5.64209 5.76329 5.87020 5.91026 5.92333 5.98110 6.05676 6.13564 6.18892 6.29643 6.31609 6.37086 6.44065 6.51852 6.54909 6.61458 6.65860 6.76561 6.79474 6.85915 6.87114 7.09668 7.18173 7.21233 7.38568 7.45996 7.69839 7.80576 7.86454 8.24777 8.38800 8.65635 9.04076 9.62541 11.08481 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002810 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.992110 B = 9961.511516 C =10671.571853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.218 3.782 4 H -0.005 1.005 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.527 5.527 14 C 0.054 3.946 15 C -0.105 4.105 16 C 0.088 3.912 17 N -0.529 5.529 18 C 0.018 3.982 19 C 0.086 3.914 20 C -0.070 4.070 21 C -0.097 4.097 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.108 4.108 27 C 0.066 3.934 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.091 0.909 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.020 0.980 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.076 0.924 50 H 0.054 0.946 51 H 0.088 0.912 52 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 10.213 18.891 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.076 4.076 15 C -0.143 4.143 16 C -0.020 4.020 17 N -0.253 5.253 18 C -0.130 4.130 19 C -0.041 4.041 20 C -0.071 4.071 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.063 4.063 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.108 0.892 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.095 0.905 50 H 0.073 0.927 51 H 0.106 0.894 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -4.903 10.040 18.606 21.704 hybrid contribution 1.559 0.427 -0.573 1.715 sum -3.343 10.467 18.033 21.117 Atomic orbital electron populations 1.21461 0.97262 0.97224 1.01888 1.21576 0.95174 0.98216 1.00008 1.19222 0.92280 0.90809 0.86513 0.98771 1.21045 1.30878 1.11865 0.89684 0.91997 1.24901 0.95234 0.95093 0.98910 1.69873 1.36328 1.22577 1.24489 0.86648 0.79094 0.79540 0.82648 1.20433 1.21477 1.20218 1.62019 1.60125 1.01100 1.01931 1.22052 0.96018 0.98938 0.90550 1.21672 1.02170 0.93149 0.97288 1.21743 0.94680 0.94831 0.90731 1.62081 1.58232 1.00870 1.04073 1.22498 0.98627 1.00105 0.91770 1.21145 0.95116 0.89003 0.98840 1.19800 0.95844 0.97436 0.93997 1.21083 0.93603 0.96845 1.00071 1.21169 0.99608 0.99641 0.93548 1.21121 0.97071 1.00265 0.95883 1.21082 0.95012 0.98704 0.99391 1.21061 0.99786 0.99573 0.93035 1.21738 1.02370 0.97501 0.93014 1.21920 0.95558 0.90469 0.98317 0.93342 0.92767 0.96737 0.89056 0.96876 0.93015 0.96689 0.90579 0.92692 0.90477 0.94940 0.96132 0.91383 0.90922 0.94345 0.89222 0.85790 0.86166 0.86409 0.86381 0.86542 0.90483 0.92714 0.89386 0.96744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.50 37.16 0.35 -2.30 16 2 C -0.11 -2.64 5.02 -26.74 -0.13 -2.78 16 3 C 0.22 5.34 1.76 -68.87 -0.12 5.22 16 4 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 5 C -0.50 -13.11 6.79 -34.44 -0.23 -13.34 16 6 H 0.06 1.64 6.53 -52.49 -0.34 1.30 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.10 11.31 55.43 0.63 -24.48 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.53 -10.92 3.57 -228.08 -0.81 -11.73 16 14 C 0.05 0.97 5.17 -3.83 -0.02 0.95 16 15 C -0.10 -1.58 4.93 -26.65 -0.13 -1.71 16 16 C 0.09 1.25 2.01 -67.59 -0.14 1.12 16 17 N -0.53 -6.69 4.62 -236.18 -1.09 -7.78 16 18 C 0.02 0.20 8.76 60.07 0.53 0.73 16 19 C 0.09 0.98 4.94 -4.97 -0.02 0.96 16 20 C -0.07 -0.76 4.89 -104.63 -0.51 -1.27 16 21 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 25 C -0.12 -1.14 7.90 -39.58 -0.31 -1.45 16 26 C -0.11 -1.67 5.11 -26.65 -0.14 -1.81 16 27 C 0.07 1.27 5.23 -3.83 -0.02 1.25 16 28 H 0.05 1.03 7.37 -51.93 -0.38 0.64 16 29 H 0.05 1.29 7.47 -51.93 -0.39 0.90 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 2.43 6.02 -51.93 -0.31 2.12 16 32 H 0.01 0.28 6.37 -51.93 -0.33 -0.05 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 1.40 6.00 -51.93 -0.31 1.09 16 36 H 0.05 0.73 6.50 -51.93 -0.34 0.39 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.49 8.14 -51.94 -0.42 0.06 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.72 5.88 -51.93 -0.31 0.42 16 41 H 0.07 0.81 6.30 -51.93 -0.33 0.49 16 42 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 43 H 0.09 1.03 5.84 -51.93 -0.30 0.73 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.12 1.01 7.98 -52.49 -0.42 0.59 16 49 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.05 0.75 6.34 -51.93 -0.33 0.42 16 51 H 0.09 1.83 6.14 -51.93 -0.32 1.51 16 52 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -27.71 385.98 -12.09 -39.81 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -9.04 Total: 1.20 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.57 Total: -18.90 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -1.28 Total: -44.00 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.71 -12.09 -39.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717470907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.691 kcal (2) G-P(sol) polarization free energy of solvation -27.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds