Wall clock time and date at job start Tue Mar 31 2020 11:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47309 * 2 1 4 4 H 1.09001 * 109.47258 * 177.82178 * 3 2 1 5 5 C 1.50704 * 109.47143 * 297.81993 * 3 2 1 6 6 H 1.07998 * 120.00243 * 119.99826 * 5 3 2 7 7 C 1.37875 * 119.99883 * 300.00214 * 5 3 2 8 8 N 1.31522 * 120.00020 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00178 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46991 * 60.00160 * 9 7 5 11 11 H 1.48504 * 109.47249 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47188 * 300.00250 * 9 7 5 13 13 N 1.46897 * 109.47723 * 57.82117 * 3 2 1 14 14 C 1.46848 * 110.99777 * 58.15507 * 13 3 2 15 15 C 1.53042 * 109.52197 * 185.84256 * 14 13 3 16 16 C 1.53124 * 109.27836 * 300.82159 * 15 14 13 17 17 N 1.46894 * 109.52086 * 177.55491 * 16 15 14 18 18 C 1.46903 * 110.99689 * 56.05310 * 17 16 15 19 19 C 1.46905 * 110.99946 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.46879 * 170.00247 * 19 17 16 21 21 C 1.38230 * 120.00119 * 269.72903 * 20 19 17 22 22 C 1.38240 * 120.00033 * 179.77315 * 21 20 19 23 23 C 1.38240 * 119.99612 * 0.50108 * 22 21 20 24 24 C 1.38228 * 120.00076 * 359.75475 * 23 22 21 25 25 C 1.38234 * 120.00412 * 359.97438 * 24 23 22 26 26 C 1.53126 * 109.15903 * 57.65652 * 16 15 14 27 27 C 1.46849 * 111.00271 * 182.37085 * 13 3 2 28 28 H 1.08999 * 109.47114 * 305.08739 * 1 2 3 29 29 H 1.09006 * 109.47258 * 65.08424 * 1 2 3 30 30 H 1.09001 * 109.47690 * 185.08643 * 1 2 3 31 31 H 1.08998 * 109.47283 * 239.99312 * 2 1 3 32 32 H 1.09005 * 109.47084 * 119.99800 * 2 1 3 33 33 H 0.97004 * 119.99701 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.45924 * 65.82869 * 14 13 3 35 35 H 1.09001 * 109.46222 * 305.85778 * 14 13 3 36 36 H 1.08996 * 109.50125 * 180.88034 * 15 14 13 37 37 H 1.09001 * 109.50303 * 60.76621 * 15 14 13 38 38 H 1.08989 * 109.52248 * 297.75034 * 16 15 14 39 39 H 1.08995 * 109.47718 * 59.99644 * 18 17 16 40 40 H 1.09001 * 109.47285 * 179.97438 * 18 17 16 41 41 H 1.09002 * 109.46792 * 299.99297 * 18 17 16 42 42 H 1.08997 * 109.47489 * 290.00380 * 19 17 16 43 43 H 1.09001 * 109.46339 * 50.00549 * 19 17 16 44 44 H 1.07999 * 120.00223 * 359.97438 * 21 20 19 45 45 H 1.07997 * 120.00278 * 180.23158 * 22 21 20 46 46 H 1.08006 * 119.99641 * 179.72677 * 23 22 21 47 47 H 1.08002 * 119.99874 * 179.97438 * 24 23 22 48 48 H 1.07996 * 120.00354 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.50359 * 62.28303 * 26 16 15 50 50 H 1.08996 * 109.50154 * 182.36812 * 26 16 15 51 51 H 1.08996 * 109.46484 * 54.14200 * 27 13 3 52 52 H 1.09001 * 109.45639 * 294.17443 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1293 1.4427 0.0391 5 6 1.5823 2.1371 -1.2566 6 1 0.9584 3.0162 -1.1911 7 6 1.9599 1.6502 -2.4900 8 7 2.7200 0.5799 -2.5699 9 14 1.3920 2.5108 -4.0477 10 1 1.8866 3.9110 -4.0480 11 1 1.9306 1.7959 -5.2327 12 1 -0.0920 2.5100 -4.1007 13 7 1.5079 2.1501 1.1722 14 6 1.8982 1.4748 2.4164 15 6 1.2091 2.1517 3.6035 16 6 1.6177 3.6267 3.6514 17 7 0.9138 4.2954 4.7537 18 6 1.1701 3.6162 6.0308 19 6 1.2833 5.7152 4.8298 20 6 0.3710 6.4203 5.8001 21 6 -0.8041 6.9940 5.3519 22 6 -1.6432 7.6367 6.2429 23 6 -1.3021 7.7147 7.5803 24 6 -0.1245 7.1456 8.0275 25 6 0.7120 6.4981 7.1376 26 6 1.2437 4.2950 2.3254 27 6 1.9318 3.5560 1.1754 28 1 -0.3633 0.5907 0.8409 29 1 -0.3634 0.4330 -0.9321 30 1 -0.3634 -1.0236 0.0911 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9854 0.2371 -3.4377 34 1 2.9793 1.5377 2.5400 35 1 1.5982 0.4279 2.3710 36 1 1.5112 1.6602 4.5283 37 1 0.1279 2.0772 3.4875 38 1 2.6939 3.7017 3.8063 39 1 2.2396 3.6282 6.2407 40 1 0.6376 4.1320 6.8300 41 1 0.8234 2.5846 5.9696 42 1 2.3148 5.8046 5.1704 43 1 1.1856 6.1693 3.8437 44 1 -1.0682 6.9373 4.3063 45 1 -2.5631 8.0817 5.8934 46 1 -1.9556 8.2207 8.2756 47 1 0.1422 7.2069 9.0723 48 1 1.6322 6.0538 7.4870 49 1 0.1631 4.2542 2.1893 50 1 1.5701 5.3349 2.3373 51 1 1.6563 4.0206 0.2287 52 1 3.0128 3.6090 1.3048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717470907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:06 Heat of formation + Delta-G solvation = 20.153872 kcal Electronic energy + Delta-G solvation = -27244.307830 eV Core-core repulsion = 23821.813804 eV Total energy + Delta-G solvation = -3422.494026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80514 -39.92028 -38.11664 -35.65297 -33.60883 -32.79398 -31.77830 -31.64251 -31.04733 -28.21073 -28.05044 -26.01153 -24.86515 -23.77427 -23.36638 -22.75913 -21.77104 -20.93582 -20.37264 -18.10636 -17.70962 -17.45278 -16.64807 -16.31455 -16.23098 -15.85863 -15.63068 -15.51257 -15.20802 -15.02523 -14.84480 -14.24541 -14.21226 -13.90159 -13.87034 -13.60188 -13.56413 -13.38526 -13.14840 -12.90785 -12.77928 -12.57317 -12.43686 -12.39840 -12.16603 -12.03505 -11.91965 -11.77939 -11.69809 -11.59755 -11.34596 -11.27105 -11.06072 -10.65718 -10.39842 -9.74574 -9.64843 -9.21750 -8.83588 -8.06035 -6.15765 0.47691 0.56880 1.43247 1.44503 1.51527 2.44563 2.75200 3.19472 3.22307 3.39163 3.78879 3.90667 3.97227 4.02057 4.21615 4.28917 4.31341 4.37577 4.39838 4.41926 4.51166 4.59684 4.60177 4.67170 4.71322 4.73890 4.77093 4.80911 4.85498 4.89295 4.91071 4.96238 5.05410 5.12837 5.17121 5.22119 5.23514 5.28402 5.32966 5.39405 5.51828 5.57315 5.62221 5.68415 5.76035 5.77139 5.81111 5.92388 6.10724 6.16771 6.20136 6.35215 6.47889 6.82564 6.97920 7.51925 8.99304 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002810 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.992110 B = 9961.511516 C =10671.571853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C 0.224 3.776 4 H -0.048 1.048 5 C -0.503 4.503 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.528 5.528 14 C 0.054 3.946 15 C -0.093 4.093 16 C 0.096 3.904 17 N -0.534 5.534 18 C 0.019 3.981 19 C 0.089 3.911 20 C -0.084 4.084 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.095 4.095 27 C 0.068 3.932 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.259 0.741 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.135 0.865 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.126 0.874 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.066 0.934 52 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 11.270 21.020 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C 0.117 3.883 4 H -0.031 1.031 5 C -0.542 4.542 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.253 5.253 14 C -0.075 4.075 15 C -0.131 4.131 16 C -0.013 4.013 17 N -0.257 5.257 18 C -0.128 4.128 19 C -0.038 4.038 20 C -0.084 4.084 21 C -0.133 4.133 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.061 4.061 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.153 0.847 46 H 0.158 0.842 47 H 0.158 0.842 48 H 0.144 0.856 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.084 0.916 52 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -6.100 11.112 20.757 24.322 hybrid contribution 1.946 0.132 -1.156 2.267 sum -4.155 11.244 19.601 22.975 Atomic orbital electron populations 1.21307 0.95617 0.98636 1.00886 1.21448 0.96484 0.97401 0.99232 1.19007 0.89735 0.91819 0.87765 1.03089 1.21265 1.30467 1.11709 0.90722 0.92449 1.25616 0.95410 0.95718 1.01752 1.70013 1.37363 1.23769 1.24934 0.85718 0.78752 0.78649 0.79168 1.19845 1.21314 1.19696 1.61996 1.59724 1.01737 1.01871 1.22110 0.95961 0.98986 0.90431 1.21566 1.01288 0.93628 0.96653 1.21551 0.94578 0.94343 0.90785 1.62041 1.57955 1.01542 1.04203 1.22519 0.99177 1.00056 0.91082 1.21121 0.95562 0.88186 0.98946 1.19794 0.96025 0.98204 0.94425 1.21201 0.94114 0.97688 1.00332 1.21420 1.00039 0.99433 0.93877 1.21456 0.97350 0.99827 0.96007 1.21399 0.94765 0.97957 1.00413 1.21225 1.00383 0.99780 0.92739 1.21586 1.01303 0.98119 0.92283 1.21897 0.95304 0.89885 0.99015 0.92575 0.95050 0.94388 0.92062 0.95366 0.93179 0.97410 0.90859 0.90297 0.91052 0.95291 0.95487 0.90655 0.90792 0.93973 0.89742 0.86134 0.84670 0.84182 0.84213 0.85608 0.91208 0.90859 0.91566 0.97785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.50 71.98 0.68 -3.97 16 2 C -0.11 -5.17 5.02 30.59 0.15 -5.02 16 3 C 0.22 11.32 1.76 44.17 0.08 11.40 16 4 H -0.05 -2.81 8.14 -2.39 -0.02 -2.82 16 5 C -0.50 -27.29 6.79 25.60 0.17 -27.11 16 6 H 0.06 3.11 6.53 -2.91 -0.02 3.09 16 7 C 0.01 0.73 5.30 84.65 0.45 1.18 16 8 N -0.92 -53.17 11.31 21.45 0.24 -52.93 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.53 -22.22 3.57 -875.51 -3.13 -25.34 16 14 C 0.05 1.93 5.17 86.33 0.45 2.37 16 15 C -0.09 -2.66 4.93 30.65 0.15 -2.51 16 16 C 0.10 2.60 2.01 45.00 0.09 2.69 16 17 N -0.53 -12.53 4.62 -901.14 -4.17 -16.69 16 18 C 0.02 0.39 8.76 127.69 1.12 1.51 16 19 C 0.09 1.89 4.94 85.55 0.42 2.32 16 20 C -0.08 -1.69 4.89 -19.87 -0.10 -1.79 16 21 C -0.11 -2.30 9.70 22.27 0.22 -2.09 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 24 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 25 C -0.12 -2.14 7.90 22.27 0.18 -1.96 16 26 C -0.09 -2.88 5.11 30.65 0.16 -2.72 16 27 C 0.07 2.64 5.23 86.33 0.45 3.10 16 28 H 0.06 2.32 7.37 -2.39 -0.02 2.31 16 29 H 0.03 1.47 7.47 -2.38 -0.02 1.46 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 3.35 6.02 -2.39 -0.01 3.33 16 32 H 0.03 1.24 6.37 -2.38 -0.02 1.22 16 33 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 2.65 6.00 -2.39 -0.01 2.63 16 36 H 0.08 1.90 6.50 -2.39 -0.02 1.88 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 1.41 5.88 -2.39 -0.01 1.40 16 41 H 0.07 1.45 6.30 -2.39 -0.02 1.44 16 42 H 0.04 0.86 8.06 -2.39 -0.02 0.84 16 43 H 0.08 1.85 5.84 -2.39 -0.01 1.84 16 44 H 0.12 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 47 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 48 H 0.13 1.88 7.98 -2.91 -0.02 1.86 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.07 1.95 6.34 -2.39 -0.02 1.94 16 51 H 0.07 2.84 6.14 -2.39 -0.01 2.83 16 52 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -60.53 385.98 1.19 -59.34 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.87 Total: 17.78 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 5.34 Total: -28.01 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -7.05 Total: -94.97 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.53 1.19 -59.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717470907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.492 kcal (2) G-P(sol) polarization free energy of solvation -60.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds