Wall clock time and date at job start Tue Mar 31 2020 11:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.53005 * 109.46982 * 119.99652 * 2 1 3 5 5 C 1.52999 * 109.47159 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47317 * 300.00546 * 5 4 2 7 7 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 8 8 N 1.46896 * 109.46848 * 179.97438 * 6 5 4 9 9 C 1.46901 * 110.99913 * 85.00348 * 8 6 5 10 10 C 1.50703 * 109.47196 * 180.02562 * 9 8 6 11 11 C 1.38288 * 119.92279 * 269.72223 * 10 9 8 12 12 C 1.38103 * 120.07470 * 179.72421 * 11 10 9 13 13 C 1.38906 * 119.92614 * 0.55047 * 12 11 10 14 14 N 1.39667 * 120.07715 * 179.75003 * 13 12 11 15 15 C 1.46503 * 120.00361 * 179.97438 * 14 13 12 16 16 C 1.46507 * 120.00094 * 359.97400 * 14 13 12 17 17 C 1.50700 * 109.46940 * 90.00323 * 16 14 13 18 18 H 1.07999 * 120.00300 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99659 * 180.02562 * 17 16 14 20 20 N 1.31512 * 120.00064 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47444 * 59.99498 * 21 19 17 23 23 H 1.48502 * 109.47108 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47178 * 299.99481 * 21 19 17 25 25 C 1.38915 * 119.84955 * 359.72414 * 13 12 11 26 26 C 1.38110 * 119.92458 * 0.02562 * 25 13 12 27 27 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 28 28 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 29 29 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 31 31 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 32 32 H 1.09000 * 109.47360 * 300.00293 * 4 2 1 33 33 H 1.09002 * 109.46935 * 60.00267 * 4 2 1 34 34 H 1.08996 * 109.46929 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.46716 * 60.00455 * 5 4 2 36 36 H 1.00896 * 111.00728 * 321.04492 * 8 6 5 37 37 H 1.09007 * 109.47248 * 299.99411 * 9 8 6 38 38 H 1.08990 * 109.47767 * 59.99672 * 9 8 6 39 39 H 1.08006 * 119.95909 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.03661 * 180.27205 * 12 11 10 41 41 H 1.09003 * 109.46996 * 89.99830 * 15 14 13 42 42 H 1.08994 * 109.47647 * 209.99513 * 15 14 13 43 43 H 1.09005 * 109.47156 * 330.00449 * 15 14 13 44 44 H 1.08998 * 109.47214 * 210.00260 * 16 14 13 45 45 H 1.09000 * 109.46657 * 330.00398 * 16 14 13 46 46 H 0.96995 * 119.99768 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.03932 * 179.97438 * 25 13 12 48 48 H 1.07996 * 119.96205 * 180.02562 * 26 25 13 49 49 H 1.08992 * 109.47399 * 59.99823 * 27 6 5 50 50 H 1.09004 * 109.46724 * 180.02562 * 27 6 5 51 51 H 1.08993 * 109.47194 * 59.99677 * 28 2 1 52 52 H 1.09002 * 109.46695 * 299.99691 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 1 3.7159 -2.4709 0.0000 8 7 5.5485 -1.4433 -0.0006 9 6 6.0752 -2.5666 0.7860 10 6 7.5817 -2.5333 0.7630 11 6 8.2716 -3.2103 -0.2259 12 6 9.6520 -3.1772 -0.2533 13 6 10.3477 -2.4723 0.7206 14 7 11.7439 -2.4410 0.6989 15 6 12.4760 -1.6966 1.7266 16 6 12.4763 -3.1527 -0.3515 17 6 12.6888 -2.2335 -1.5267 18 1 12.3153 -1.2207 -1.4945 19 6 13.3592 -2.6859 -2.6433 20 7 13.8136 -3.9194 -2.6827 21 14 13.6220 -1.5468 -4.1003 22 1 14.4052 -0.3617 -3.6672 23 1 14.3645 -2.2681 -5.1650 24 1 12.3057 -1.1048 -4.6267 25 6 9.6517 -1.7980 1.7159 26 6 8.2711 -1.8310 1.7344 27 6 3.5696 -0.7221 -1.2494 28 6 2.0400 -0.7212 -1.2492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6766 -0.2074 2.1393 33 1 1.6767 -1.7489 1.2493 34 1 3.9332 -1.2352 2.1393 35 1 3.9336 0.3058 1.2489 36 1 5.9103 -0.5641 0.3373 37 1 5.7261 -2.4845 1.8154 38 1 5.7256 -3.5058 0.3577 39 1 7.7301 -3.7622 -0.9800 40 1 10.1900 -3.7025 -1.0285 41 1 12.6856 -2.3533 2.5710 42 1 13.4141 -1.3295 1.3104 43 1 11.8731 -0.8532 2.0632 44 1 13.4423 -3.4773 0.0352 45 1 11.9015 -4.0224 -0.6697 46 1 14.2856 -4.2376 -3.4681 47 1 10.1896 -1.2493 2.4749 48 1 7.7294 -1.3066 2.5077 49 1 3.9332 0.3054 -1.2496 50 1 3.9323 -1.2364 -2.1394 51 1 1.6767 -0.2075 -2.1392 52 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731041535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:52 Heat of formation + Delta-G solvation = 2.472002 kcal Electronic energy + Delta-G solvation = -25960.610617 eV Core-core repulsion = 22537.349848 eV Total energy + Delta-G solvation = -3423.260769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.45461 -38.84009 -36.32528 -34.92907 -32.73200 -31.61556 -30.95592 -30.41338 -29.20177 -27.78355 -26.30075 -24.92409 -23.74080 -22.88162 -22.02342 -21.52773 -21.07125 -20.09337 -19.48409 -16.73575 -16.45791 -16.04598 -15.31865 -15.10633 -14.67387 -14.56963 -14.42954 -14.31585 -14.08836 -13.86557 -13.68838 -13.31589 -12.98000 -12.84768 -12.72010 -12.43424 -12.38663 -12.13481 -12.10176 -11.79679 -11.63524 -11.38450 -11.32388 -11.22452 -11.05554 -10.96762 -10.87831 -10.70120 -10.65652 -10.38459 -10.27820 -10.23765 -9.88251 -9.73706 -8.83102 -8.48741 -8.27978 -8.22213 -6.44768 -6.00046 -4.15735 2.13904 2.24445 3.29822 3.33963 3.37774 4.12325 4.19064 4.42868 4.43569 4.46818 4.60092 4.77915 4.84147 4.97415 5.17654 5.22836 5.23539 5.28888 5.31622 5.33887 5.36003 5.38770 5.53480 5.57098 5.60386 5.64053 5.67640 5.79915 5.83220 5.86206 5.88034 5.94407 5.99011 6.03622 6.04526 6.10033 6.21776 6.25248 6.29288 6.42357 6.46499 6.66357 6.95091 7.02989 7.15243 7.20853 7.29177 7.39782 7.49683 7.63252 7.82559 8.17046 8.28475 8.50614 8.92956 9.50975 10.97218 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002402 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.753121 B =11654.767949 C =12711.584177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.068 0.932 4 C -0.109 4.109 5 C -0.149 4.149 6 C 0.088 3.912 7 H 0.074 0.926 8 N -0.680 5.680 9 C 0.117 3.883 10 C -0.172 4.172 11 C -0.051 4.051 12 C -0.188 4.188 13 C 0.241 3.759 14 N -0.616 5.616 15 C 0.099 3.901 16 C 0.249 3.751 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.222 4.222 26 C -0.069 4.069 27 C -0.107 4.107 28 C -0.113 4.113 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.341 0.659 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.112 0.888 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.061 0.939 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.043 5.459 8.522 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.147 4.147 5 C -0.189 4.189 6 C -0.022 4.022 7 H 0.092 0.908 8 N -0.310 5.310 9 C -0.012 4.012 10 C -0.175 4.175 11 C -0.070 4.070 12 C -0.210 4.210 13 C 0.134 3.866 14 N -0.321 5.321 15 C -0.046 4.046 16 C 0.129 3.871 17 C -0.570 4.570 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.245 4.245 26 C -0.088 4.088 27 C -0.145 4.145 28 C -0.151 4.151 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.159 0.841 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.130 0.870 48 H 0.122 0.878 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.080 0.920 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.607 4.972 7.791 23.501 hybrid contribution 0.163 0.996 0.059 1.011 sum -21.444 5.967 7.849 23.602 Atomic orbital electron populations 1.21837 0.95485 1.01702 1.01476 1.21160 0.95169 0.99708 0.95163 0.91339 1.21523 0.95192 1.00593 0.97414 1.22290 0.96242 1.01178 0.99147 1.21594 0.87807 0.99195 0.93643 0.90796 1.60655 1.05708 1.06645 1.57983 1.20665 0.91661 0.94180 0.94652 1.19190 0.93693 1.05506 0.99141 1.20643 0.93276 0.96962 0.96161 1.20897 0.93853 1.05125 1.01163 1.17957 0.84039 0.91968 0.92640 1.47096 1.01826 1.53559 1.29653 1.21466 0.97057 0.95165 0.90869 1.19283 0.91361 0.92043 0.84389 1.21538 1.36188 0.99049 1.00219 0.92320 1.24964 0.95389 0.95223 0.98517 1.69919 1.37967 1.15598 1.29938 0.86577 0.78449 0.80664 0.81898 1.20278 1.21204 1.20030 1.20512 0.94082 1.07785 1.02145 1.20493 0.93397 0.97618 0.97287 1.21491 0.94163 1.00841 0.98036 1.21589 0.95772 1.00527 0.97254 0.92766 0.92904 0.92776 0.92306 0.92055 0.92184 0.91885 0.84070 0.95525 0.91182 0.87059 0.85096 0.94664 0.91471 0.92730 0.95231 0.94610 0.92607 0.87006 0.87837 0.92087 0.91180 0.91987 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.09 -0.68 2.72 -90.62 -0.25 -0.92 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -0.81 5.20 -26.73 -0.14 -0.95 16 5 C -0.15 -1.27 5.17 -26.73 -0.14 -1.41 16 6 C 0.09 0.86 2.47 -67.72 -0.17 0.69 16 7 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 8 N -0.68 -8.13 6.24 -107.99 -0.67 -8.80 16 9 C 0.12 1.47 5.61 -4.97 -0.03 1.44 16 10 C -0.17 -2.68 5.39 -104.59 -0.56 -3.25 16 11 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 12 C -0.19 -3.87 9.21 -39.38 -0.36 -4.23 16 13 C 0.24 4.94 6.55 -83.79 -0.55 4.39 16 14 N -0.62 -13.31 2.99 -180.99 -0.54 -13.85 16 15 C 0.10 1.75 10.19 59.85 0.61 2.36 16 16 C 0.25 6.30 4.91 -5.19 -0.03 6.27 16 17 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.79 13.29 55.43 0.74 -25.06 16 21 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 26 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 27 C -0.11 -1.00 5.53 -26.75 -0.15 -1.15 16 28 C -0.11 -0.88 5.20 -26.75 -0.14 -1.02 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.53 7.46 -51.93 -0.39 0.14 16 35 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.34 4.08 8.46 -39.29 -0.33 3.74 16 37 H 0.03 0.31 7.38 -51.93 -0.38 -0.07 16 38 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 39 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.13 2.97 6.14 -52.49 -0.32 2.65 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 43 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.04 0.96 6.20 -51.93 -0.32 0.63 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 48 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 52 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -28.38 404.00 -12.03 -40.41 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -9.51 Total: 3.41 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.11 Total: -18.69 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.48 Total: -47.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.38 -12.03 -40.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731041535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.886 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds