Wall clock time and date at job start Tue Mar 31 2020 11:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.53005 * 109.46982 * 119.99652 * 2 1 3 5 5 C 1.52999 * 109.47159 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47317 * 300.00546 * 5 4 2 7 7 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 8 8 N 1.46896 * 109.46848 * 179.97438 * 6 5 4 9 9 C 1.46901 * 110.99913 * 85.00348 * 8 6 5 10 10 C 1.50703 * 109.47196 * 180.02562 * 9 8 6 11 11 C 1.38288 * 119.92279 * 269.72223 * 10 9 8 12 12 C 1.38103 * 120.07470 * 179.72421 * 11 10 9 13 13 C 1.38906 * 119.92614 * 0.55047 * 12 11 10 14 14 N 1.39667 * 120.07715 * 179.75003 * 13 12 11 15 15 C 1.46503 * 120.00361 * 179.97438 * 14 13 12 16 16 C 1.46507 * 120.00094 * 359.97400 * 14 13 12 17 17 C 1.50700 * 109.46940 * 90.00323 * 16 14 13 18 18 H 1.07999 * 120.00300 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99659 * 180.02562 * 17 16 14 20 20 N 1.31512 * 120.00064 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47444 * 59.99498 * 21 19 17 23 23 H 1.48502 * 109.47108 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47178 * 299.99481 * 21 19 17 25 25 C 1.38915 * 119.84955 * 359.72414 * 13 12 11 26 26 C 1.38110 * 119.92458 * 0.02562 * 25 13 12 27 27 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 28 28 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 29 29 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 31 31 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 32 32 H 1.09000 * 109.47360 * 300.00293 * 4 2 1 33 33 H 1.09002 * 109.46935 * 60.00267 * 4 2 1 34 34 H 1.08996 * 109.46929 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.46716 * 60.00455 * 5 4 2 36 36 H 1.00896 * 111.00728 * 321.04492 * 8 6 5 37 37 H 1.09007 * 109.47248 * 299.99411 * 9 8 6 38 38 H 1.08990 * 109.47767 * 59.99672 * 9 8 6 39 39 H 1.08006 * 119.95909 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.03661 * 180.27205 * 12 11 10 41 41 H 1.09003 * 109.46996 * 89.99830 * 15 14 13 42 42 H 1.08994 * 109.47647 * 209.99513 * 15 14 13 43 43 H 1.09005 * 109.47156 * 330.00449 * 15 14 13 44 44 H 1.08998 * 109.47214 * 210.00260 * 16 14 13 45 45 H 1.09000 * 109.46657 * 330.00398 * 16 14 13 46 46 H 0.96995 * 119.99768 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.03932 * 179.97438 * 25 13 12 48 48 H 1.07996 * 119.96205 * 180.02562 * 26 25 13 49 49 H 1.08992 * 109.47399 * 59.99823 * 27 6 5 50 50 H 1.09004 * 109.46724 * 180.02562 * 27 6 5 51 51 H 1.08993 * 109.47194 * 59.99677 * 28 2 1 52 52 H 1.09002 * 109.46695 * 299.99691 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 1 3.7159 -2.4709 0.0000 8 7 5.5485 -1.4433 -0.0006 9 6 6.0752 -2.5666 0.7860 10 6 7.5817 -2.5333 0.7630 11 6 8.2716 -3.2103 -0.2259 12 6 9.6520 -3.1772 -0.2533 13 6 10.3477 -2.4723 0.7206 14 7 11.7439 -2.4410 0.6989 15 6 12.4760 -1.6966 1.7266 16 6 12.4763 -3.1527 -0.3515 17 6 12.6888 -2.2335 -1.5267 18 1 12.3153 -1.2207 -1.4945 19 6 13.3592 -2.6859 -2.6433 20 7 13.8136 -3.9194 -2.6827 21 14 13.6220 -1.5468 -4.1003 22 1 14.4052 -0.3617 -3.6672 23 1 14.3645 -2.2681 -5.1650 24 1 12.3057 -1.1048 -4.6267 25 6 9.6517 -1.7980 1.7159 26 6 8.2711 -1.8310 1.7344 27 6 3.5696 -0.7221 -1.2494 28 6 2.0400 -0.7212 -1.2492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6766 -0.2074 2.1393 33 1 1.6767 -1.7489 1.2493 34 1 3.9332 -1.2352 2.1393 35 1 3.9336 0.3058 1.2489 36 1 5.9103 -0.5641 0.3373 37 1 5.7261 -2.4845 1.8154 38 1 5.7256 -3.5058 0.3577 39 1 7.7301 -3.7622 -0.9800 40 1 10.1900 -3.7025 -1.0285 41 1 12.6856 -2.3533 2.5710 42 1 13.4141 -1.3295 1.3104 43 1 11.8731 -0.8532 2.0632 44 1 13.4423 -3.4773 0.0352 45 1 11.9015 -4.0224 -0.6697 46 1 14.2856 -4.2376 -3.4681 47 1 10.1896 -1.2493 2.4749 48 1 7.7294 -1.3066 2.5077 49 1 3.9332 0.3054 -1.2496 50 1 3.9323 -1.2364 -2.1394 51 1 1.6767 -0.2075 -2.1392 52 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731041535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:50 Heat of formation + Delta-G solvation = -10.910426 kcal Electronic energy + Delta-G solvation = -25961.190923 eV Core-core repulsion = 22537.349848 eV Total energy + Delta-G solvation = -3423.841075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53974 -39.90043 -37.65026 -36.03903 -34.73341 -32.59251 -31.87924 -31.61640 -30.37730 -29.57855 -27.40984 -26.23705 -25.10167 -23.67452 -23.35038 -22.99584 -21.79497 -21.09909 -20.58974 -18.63344 -18.13301 -17.01717 -16.90034 -16.23741 -15.96404 -15.74660 -15.37150 -15.20869 -15.12997 -15.04991 -14.90531 -14.46090 -14.27886 -14.22342 -13.97324 -13.58028 -13.23357 -13.13884 -13.10674 -13.04243 -12.97970 -12.90517 -12.67749 -12.52799 -12.40322 -12.19895 -11.97840 -11.90719 -11.77160 -11.69120 -11.44061 -11.40535 -11.07587 -10.95965 -10.64033 -10.39628 -9.65869 -9.15694 -8.35852 -7.79508 -6.37241 0.72012 0.84885 1.36758 1.39136 1.47187 2.34323 2.63966 3.02695 3.06229 3.50139 3.78947 3.85243 4.05999 4.07897 4.13933 4.22184 4.25432 4.31089 4.44481 4.49345 4.53890 4.60898 4.66061 4.66892 4.70186 4.72957 4.76094 4.83493 4.87148 4.90572 4.97027 5.01861 5.03485 5.08664 5.13331 5.20413 5.21154 5.24102 5.30397 5.33501 5.34446 5.43768 5.52753 5.59787 5.62264 5.67027 5.70359 5.95173 6.07286 6.19379 6.28696 6.50497 6.57768 6.82768 6.94496 7.34361 8.83172 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002402 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.753121 B =11654.767949 C =12711.584177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.107 4.107 5 C -0.143 4.143 6 C 0.091 3.909 7 H 0.072 0.928 8 N -0.693 5.693 9 C 0.123 3.877 10 C -0.158 4.158 11 C -0.057 4.057 12 C -0.217 4.217 13 C 0.211 3.789 14 N -0.632 5.632 15 C 0.098 3.902 16 C 0.266 3.734 17 C -0.541 4.541 18 H 0.048 0.952 19 C 0.011 3.989 20 N -0.926 5.926 21 Si 0.961 3.039 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.274 1.274 25 C -0.216 4.216 26 C -0.061 4.061 27 C -0.105 4.105 28 C -0.109 4.109 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.342 0.658 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.267 0.733 47 H 0.133 0.867 48 H 0.142 0.858 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.065 0.935 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.417 7.246 9.828 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.145 4.145 5 C -0.182 4.182 6 C -0.019 4.019 7 H 0.090 0.910 8 N -0.323 5.323 9 C -0.005 4.005 10 C -0.161 4.161 11 C -0.076 4.076 12 C -0.240 4.240 13 C 0.107 3.893 14 N -0.340 5.340 15 C -0.045 4.045 16 C 0.144 3.856 17 C -0.580 4.580 18 H 0.067 0.933 19 C -0.188 4.188 20 N -0.566 5.566 21 Si 0.786 3.214 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.199 1.199 25 C -0.239 4.239 26 C -0.080 4.080 27 C -0.143 4.143 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.151 0.849 48 H 0.160 0.840 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.084 0.916 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.014 6.772 9.121 26.566 hybrid contribution 0.766 0.425 -0.309 0.929 sum -23.248 7.197 8.812 25.883 Atomic orbital electron populations 1.21816 0.94643 1.01957 1.01897 1.21140 0.95855 0.99346 0.94685 0.91647 1.21511 0.94374 1.00822 0.97780 1.22209 0.96944 1.00839 0.98215 1.21586 0.86432 0.99353 0.94480 0.90990 1.60601 1.07173 1.06414 1.58109 1.20604 0.89282 0.94637 0.96012 1.19541 0.95509 1.03410 0.97654 1.20783 0.92158 0.97481 0.97215 1.20776 0.95185 1.06674 1.01341 1.18230 0.83605 0.93499 0.94001 1.46955 1.02509 1.54619 1.29893 1.21601 0.96666 0.95934 0.90274 1.18770 0.90305 0.91392 0.85085 1.21737 1.36073 0.98795 1.01373 0.93333 1.25793 0.95079 0.96695 1.01224 1.70028 1.38589 1.17153 1.30810 0.85559 0.78362 0.78907 0.78569 1.19297 1.20328 1.19941 1.20784 0.95015 1.06773 1.01319 1.20909 0.92729 0.96713 0.97644 1.21456 0.95340 1.00228 0.97295 1.21557 0.94472 1.00820 0.97902 0.92591 0.92365 0.92536 0.91522 0.91916 0.92033 0.91957 0.83971 0.93475 0.91067 0.86355 0.88868 0.92921 0.92567 0.90299 0.97248 0.97192 0.92391 0.84886 0.83993 0.92556 0.92699 0.91634 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 71.98 0.66 -0.84 16 2 C -0.09 -1.12 2.72 -10.79 -0.03 -1.15 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.11 -1.30 5.20 30.60 0.16 -1.15 16 5 C -0.14 -2.04 5.17 30.59 0.16 -1.88 16 6 C 0.09 1.59 2.47 44.92 0.11 1.70 16 7 H 0.07 1.30 7.80 -2.39 -0.02 1.28 16 8 N -0.69 -15.03 6.24 -495.58 -3.09 -18.12 16 9 C 0.12 2.75 5.61 85.56 0.48 3.23 16 10 C -0.16 -4.61 5.39 -19.84 -0.11 -4.71 16 11 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 12 C -0.22 -9.36 9.21 22.40 0.21 -9.15 16 13 C 0.21 8.78 6.55 38.22 0.25 9.03 16 14 N -0.63 -28.13 2.99 -726.54 -2.17 -30.31 16 15 C 0.10 3.45 10.19 127.77 1.30 4.75 16 16 C 0.27 14.26 4.91 85.63 0.42 14.68 16 17 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 18 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 19 C 0.01 0.65 5.46 84.66 0.46 1.11 16 20 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 21 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 C -0.22 -7.14 9.21 22.40 0.21 -6.93 16 26 C -0.06 -1.70 9.69 22.25 0.22 -1.48 16 27 C -0.10 -1.83 5.53 30.58 0.17 -1.66 16 28 C -0.11 -1.52 5.20 30.58 0.16 -1.36 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.87 7.46 -2.39 -0.02 0.86 16 35 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 36 H 0.34 7.29 8.46 -89.70 -0.76 6.53 16 37 H 0.05 0.90 7.38 -2.38 -0.02 0.88 16 38 H 0.07 1.61 8.00 -2.39 -0.02 1.59 16 39 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.09 4.65 6.14 -2.91 -0.02 4.63 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 2.05 8.07 -2.39 -0.02 2.04 16 43 H 0.08 2.34 6.20 -2.38 -0.01 2.32 16 44 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 45 H 0.01 0.59 6.20 -2.39 -0.01 0.57 16 46 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.13 3.78 6.14 -2.91 -0.02 3.76 16 48 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -63.32 404.00 2.44 -60.88 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.11 Total: 23.86 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 5.28 Total: -28.33 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.98 Total: -103.27 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.32 2.44 -60.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731041535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.966 kcal (2) G-P(sol) polarization free energy of solvation -63.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds