Wall clock time and date at job start Tue Mar 31 2020 11:47:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46905 * 109.47279 * 2 1
4 4 C 1.46899 * 110.99824 * 298.88272 * 3 2 1
5 5 C 1.53006 * 109.47034 * 288.38664 * 4 3 2
6 6 C 1.53005 * 109.47045 * 180.27830 * 5 4 3
7 7 C 1.53001 * 117.49484 * 243.74813 * 6 5 4
8 8 C 1.52991 * 117.49764 * 175.08496 * 6 5 4
9 9 C 1.46890 * 111.00004 * 62.83761 * 3 2 1
10 10 C 1.50701 * 109.47580 * 66.04649 * 9 3 2
11 11 C 1.38278 * 119.92603 * 269.73197 * 10 9 3
12 12 C 1.38108 * 120.07593 * 179.72501 * 11 10 9
13 13 C 1.38913 * 119.92033 * 0.54012 * 12 11 10
14 14 N 1.39682 * 120.07088 * 179.75364 * 13 12 11
15 15 C 1.46498 * 119.99749 * 179.97438 * 14 13 12
16 16 C 1.46495 * 120.00081 * 359.97360 * 14 13 12
17 17 C 1.50704 * 109.46778 * 90.00501 * 16 14 13
18 18 H 1.07999 * 120.00078 * 359.97438 * 17 16 14
19 19 C 1.37882 * 119.99968 * 180.02562 * 17 16 14
20 20 N 1.31522 * 119.99754 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00101 * 179.97438 * 19 17 16
22 22 H 1.48504 * 109.47058 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.47316 * 119.99325 * 21 19 17
24 24 H 1.48500 * 109.46874 * 239.99562 * 21 19 17
25 25 C 1.38910 * 119.85439 * 359.72927 * 13 12 11
26 26 C 1.38108 * 119.92209 * 359.97438 * 25 13 12
27 27 H 1.09005 * 109.46761 * 64.08068 * 1 2 3
28 28 H 1.09004 * 109.47392 * 184.07924 * 1 2 3
29 29 H 1.08997 * 109.47420 * 304.08135 * 1 2 3
30 30 H 1.09003 * 109.47258 * 239.99665 * 2 1 3
31 31 H 1.09008 * 109.46856 * 119.99829 * 2 1 3
32 32 H 1.09004 * 109.47051 * 48.37683 * 4 3 2
33 33 H 1.08999 * 109.47355 * 168.38189 * 4 3 2
34 34 H 1.09001 * 109.46820 * 300.26890 * 5 4 3
35 35 H 1.08997 * 109.47565 * 60.27525 * 5 4 3
36 36 H 1.09000 * 115.55225 * 29.40739 * 6 5 4
37 37 H 1.09005 * 117.50061 * 359.97438 * 7 6 5
38 38 H 1.08999 * 117.50177 * 145.01946 * 7 6 5
39 39 H 1.09006 * 117.49729 * 214.97305 * 8 6 5
40 40 H 1.09000 * 117.50181 * 359.97438 * 8 6 5
41 41 H 1.09006 * 109.47025 * 186.04946 * 9 3 2
42 42 H 1.08998 * 109.47232 * 306.04483 * 9 3 2
43 43 H 1.08000 * 119.96275 * 359.96821 * 11 10 9
44 44 H 1.08001 * 120.03998 * 180.27305 * 12 11 10
45 45 H 1.09007 * 109.46571 * 89.99747 * 15 14 13
46 46 H 1.08998 * 109.47347 * 209.99661 * 15 14 13
47 47 H 1.08998 * 109.47330 * 330.00416 * 15 14 13
48 48 H 1.08993 * 109.47221 * 210.00000 * 16 14 13
49 49 H 1.08997 * 109.47478 * 330.00267 * 16 14 13
50 50 H 0.97000 * 119.99308 * 180.02562 * 20 19 17
51 51 H 1.07997 * 120.03655 * 179.97438 * 25 13 12
52 52 H 1.07995 * 119.96046 * 179.97438 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.5706 2.1021 -1.2008
5 6 2.3289 1.5773 -2.4217
6 6 1.8662 2.3290 -3.6715
7 6 1.1644 1.5192 -4.7636
8 6 2.5908 2.0289 -4.9851
9 6 1.6049 2.0900 1.2201
10 6 2.2837 1.4698 2.4141
11 6 1.6740 0.4296 3.0911
12 6 2.2958 -0.1448 4.1823
13 6 3.5301 0.3310 4.6063
14 7 4.1595 -0.2443 5.7127
15 6 5.4615 0.2584 6.1581
16 6 3.5177 -1.3502 6.4275
17 6 3.9491 -2.6595 5.8186
18 1 4.6326 -2.6670 4.9824
19 6 3.4703 -3.8478 6.3283
20 7 2.6376 -3.8386 7.3462
21 14 4.0044 -5.4707 5.5730
22 1 4.9380 -5.2097 4.4480
23 1 4.6873 -6.2948 6.6024
24 1 2.8121 -6.1977 5.0679
25 6 4.1373 1.3798 3.9273
26 6 3.5127 1.9455 2.8332
27 1 -0.3633 0.4492 -0.9244
28 1 -0.3634 -1.0251 0.0731
29 1 -0.3634 0.5758 0.8511
30 1 1.8933 -0.5139 -0.8900
31 1 1.8932 -0.5138 0.8901
32 1 0.5015 1.9423 -1.3410
33 1 1.7662 3.1678 -1.0821
34 1 3.3984 1.7326 -2.2795
35 1 2.1294 0.5126 -2.5434
36 1 1.5263 3.3514 -3.5063
37 1 1.0328 0.4508 -4.5919
38 1 0.3633 2.0089 -5.3171
39 1 2.7273 2.8539 -5.6843
40 1 3.3974 1.2963 -4.9590
41 1 1.8872 3.1403 1.1466
42 1 0.5239 2.0116 1.3354
43 1 0.7121 0.0634 2.7639
44 1 1.8211 -0.9601 4.7080
45 1 5.3132 1.0559 6.8863
46 1 6.0264 -0.5527 6.6174
47 1 6.0135 0.6463 5.3020
48 1 3.8112 -1.3234 7.4769
49 1 2.4348 -1.2529 6.3505
50 1 2.3011 -4.6747 7.7050
51 1 5.0967 1.7523 4.2547
52 1 3.9840 2.7612 2.3051
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000761225401.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:47:45
Heat of formation + Delta-G solvation = 55.085658 kcal
Electronic energy + Delta-G solvation = -26329.100864 eV
Core-core repulsion = 22908.121594 eV
Total energy + Delta-G solvation = -3420.979270 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.41322 -38.37077 -37.25205 -35.42514 -32.73504 -31.36521 -30.88121 -30.28124
-28.50971 -27.77534 -25.76052 -24.35316 -23.95466 -22.64429 -22.32036 -21.50011
-20.71408 -20.00270 -19.33493 -16.61094 -16.42538 -16.15945 -15.85942 -15.76713
-15.07034 -14.78842 -14.26468 -14.14859 -13.99421 -13.77178 -13.65363 -13.17569
-12.92309 -12.84150 -12.74396 -12.18776 -12.10919 -11.94536 -11.87058 -11.76672
-11.51768 -11.46243 -11.37411 -11.23890 -11.06272 -10.92421 -10.74119 -10.70449
-10.66670 -10.28596 -10.24748 -10.04085 -9.84914 -9.72108 -8.80387 -8.50753
-8.23489 -8.11593 -6.43945 -6.00558 -4.16991 2.14653 2.26559 3.25200
3.33372 3.38735 3.54018 3.96985 4.18162 4.41846 4.51636 4.65425
4.67689 4.70882 4.96805 5.08436 5.14832 5.21725 5.30306 5.32790
5.35077 5.36824 5.38991 5.53171 5.55975 5.63430 5.65432 5.69313
5.70498 5.80273 5.84305 5.85808 5.94832 6.04425 6.05635 6.10350
6.13532 6.15165 6.30672 6.34755 6.43790 6.47673 6.68499 6.96936
7.04905 7.15562 7.22689 7.24856 7.30821 7.40533 7.64306 7.81768
8.16422 8.28983 8.51668 8.92748 9.49864 10.95734
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.014591 B = 0.002753 C = 0.002519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1918.551013 B =10166.702644 C =11114.731298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.045 3.955
3 N -0.530 5.530
4 C 0.053 3.947
5 C -0.084 4.084
6 C -0.149 4.149
7 C -0.184 4.184
8 C -0.182 4.182
9 C 0.107 3.893
10 C -0.165 4.165
11 C -0.067 4.067
12 C -0.188 4.188
13 C 0.240 3.760
14 N -0.616 5.616
15 C 0.099 3.901
16 C 0.249 3.751
17 C -0.529 4.529
18 H 0.060 0.940
19 C 0.060 3.940
20 N -0.895 5.895
21 Si 0.895 3.105
22 H -0.272 1.272
23 H -0.284 1.284
24 H -0.283 1.283
25 C -0.222 4.222
26 C -0.053 4.053
27 H 0.053 0.947
28 H 0.060 0.940
29 H 0.059 0.941
30 H 0.069 0.931
31 H 0.087 0.913
32 H 0.038 0.962
33 H 0.068 0.932
34 H 0.073 0.927
35 H 0.063 0.937
36 H 0.102 0.898
37 H 0.093 0.907
38 H 0.090 0.910
39 H 0.091 0.909
40 H 0.094 0.906
41 H 0.070 0.930
42 H 0.038 0.962
43 H 0.107 0.893
44 H 0.130 0.870
45 H 0.035 0.965
46 H 0.066 0.934
47 H 0.055 0.945
48 H 0.029 0.971
49 H 0.035 0.965
50 H 0.263 0.737
51 H 0.112 0.888
52 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.583 13.001 -17.469 21.929
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.252 4.252
2 C -0.083 4.083
3 N -0.253 5.253
4 C -0.075 4.075
5 C -0.122 4.122
6 C -0.168 4.168
7 C -0.221 4.221
8 C -0.219 4.219
9 C -0.020 4.020
10 C -0.168 4.168
11 C -0.087 4.087
12 C -0.210 4.210
13 C 0.133 3.867
14 N -0.322 5.322
15 C -0.045 4.045
16 C 0.129 3.871
17 C -0.568 4.568
18 H 0.078 0.922
19 C -0.141 4.141
20 N -0.535 5.535
21 Si 0.723 3.277
22 H -0.197 1.197
23 H -0.210 1.210
24 H -0.209 1.209
25 C -0.245 4.245
26 C -0.072 4.072
27 H 0.072 0.928
28 H 0.079 0.921
29 H 0.078 0.922
30 H 0.088 0.912
31 H 0.105 0.895
32 H 0.056 0.944
33 H 0.087 0.913
34 H 0.092 0.908
35 H 0.082 0.918
36 H 0.120 0.880
37 H 0.111 0.889
38 H 0.109 0.891
39 H 0.110 0.890
40 H 0.112 0.888
41 H 0.089 0.911
42 H 0.056 0.944
43 H 0.125 0.875
44 H 0.148 0.852
45 H 0.053 0.947
46 H 0.085 0.915
47 H 0.073 0.927
48 H 0.047 0.953
49 H 0.053 0.947
50 H 0.073 0.927
51 H 0.130 0.870
52 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -2.056 12.763 -17.139 21.468
hybrid contribution -0.606 -1.091 -0.340 1.293
sum -2.663 11.673 -17.479 21.186
Atomic orbital electron populations
1.22433 0.98735 1.02382 1.01648 1.22209 0.92468 0.90358 1.03273
1.62264 1.59523 1.02276 1.01268 1.22130 0.97367 0.98021 0.90010
1.21149 1.00682 0.98992 0.91340 1.22319 1.04196 1.00060 0.90223
1.23047 0.95521 1.00227 1.03256 1.22962 0.95560 1.03602 0.99781
1.20867 0.96723 0.96812 0.87593 1.19116 0.97465 1.01276 0.98933
1.20666 0.98467 0.94907 0.94643 1.20841 0.96087 1.03862 1.00248
1.17951 0.91383 0.90543 0.86777 1.47084 1.19463 1.36334 1.29324
1.21464 0.85753 0.98693 0.98632 1.19277 0.93594 0.82694 0.91538
1.21623 1.27944 0.90755 1.16453 0.92210 1.24970 0.94961 0.99264
0.94952 1.69946 1.31934 1.27240 1.24335 0.86477 0.78574 0.83423
0.79228 1.19690 1.20963 1.20866 1.20558 1.01800 1.01517 1.00658
1.20473 0.93789 0.98153 0.94788 0.92803 0.92133 0.92187 0.91227
0.89505 0.94357 0.91305 0.90798 0.91839 0.87991 0.88875 0.89144
0.89038 0.88789 0.91112 0.94426 0.87503 0.85218 0.94676 0.91514
0.92673 0.95251 0.94667 0.92735 0.86986 0.87411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.11 9.13 37.15 0.34 -1.77 16
2 C 0.04 0.55 5.56 -3.82 -0.02 0.53 16
3 N -0.53 -6.45 4.66 -236.07 -1.10 -7.55 16
4 C 0.05 0.52 4.78 -3.82 -0.02 0.50 16
5 C -0.08 -0.78 5.53 -26.73 -0.15 -0.93 16
6 C -0.15 -1.20 5.73 -90.62 -0.52 -1.72 16
7 C -0.18 -1.39 10.18 -26.69 -0.27 -1.66 16
8 C -0.18 -1.37 10.25 -26.69 -0.27 -1.64 16
9 C 0.11 1.35 4.92 -4.98 -0.02 1.33 16
10 C -0.16 -2.55 4.88 -104.59 -0.51 -3.07 16
11 C -0.07 -1.15 7.92 -39.61 -0.31 -1.46 16
12 C -0.19 -3.80 9.21 -39.38 -0.36 -4.16 16
13 C 0.24 4.90 6.55 -83.78 -0.55 4.35 16
14 N -0.62 -13.30 2.99 -181.00 -0.54 -13.84 16
15 C 0.10 1.75 10.19 59.85 0.61 2.36 16
16 C 0.25 6.26 4.91 -5.19 -0.03 6.24 16
17 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16
18 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16
19 C 0.06 1.67 5.46 -17.81 -0.10 1.57 16
20 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16
21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16
22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
25 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16
26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16
27 H 0.05 0.54 6.40 -51.93 -0.33 0.20 16
28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.06 0.68 5.62 -51.93 -0.29 0.39 16
30 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16
31 H 0.09 1.29 5.98 -51.92 -0.31 0.97 16
32 H 0.04 0.38 5.89 -51.93 -0.31 0.07 16
33 H 0.07 0.65 7.82 -51.93 -0.41 0.24 16
34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.06 0.62 6.47 -51.93 -0.34 0.28 16
36 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16
37 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16
38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16
39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.07 0.82 7.81 -51.93 -0.41 0.42 16
42 H 0.04 0.46 5.95 -51.93 -0.31 0.15 16
43 H 0.11 1.65 7.35 -52.49 -0.39 1.26 16
44 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16
45 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16
46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16
47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16
48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16
49 H 0.04 0.94 6.20 -51.93 -0.32 0.61 16
50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
51 H 0.11 1.80 6.14 -52.49 -0.32 1.47 16
52 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16
LS Contribution 401.19 15.07 6.05 6.05
Total: -1.00 -28.43 401.19 -12.03 -40.47
By element:
Atomic # 1 Polarization: 12.19 SS G_CDS: -8.90 Total: 3.30 kcal
Atomic # 6 Polarization: -16.55 SS G_CDS: -3.26 Total: -19.80 kcal
Atomic # 7 Polarization: -45.43 SS G_CDS: -0.91 Total: -46.34 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -28.43 -12.03 -40.47 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000761225401.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.551 kcal
(2) G-P(sol) polarization free energy of solvation -28.433 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds