Wall clock time and date at job start Tue Mar 31 2020 11:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.47279 * 2 1 4 4 C 1.46899 * 110.99824 * 298.88272 * 3 2 1 5 5 C 1.53006 * 109.47034 * 288.38664 * 4 3 2 6 6 C 1.53005 * 109.47045 * 180.27830 * 5 4 3 7 7 C 1.53001 * 117.49484 * 243.74813 * 6 5 4 8 8 C 1.52991 * 117.49764 * 175.08496 * 6 5 4 9 9 C 1.46890 * 111.00004 * 62.83761 * 3 2 1 10 10 C 1.50701 * 109.47580 * 66.04649 * 9 3 2 11 11 C 1.38278 * 119.92603 * 269.73197 * 10 9 3 12 12 C 1.38108 * 120.07593 * 179.72501 * 11 10 9 13 13 C 1.38913 * 119.92033 * 0.54012 * 12 11 10 14 14 N 1.39682 * 120.07088 * 179.75364 * 13 12 11 15 15 C 1.46498 * 119.99749 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00081 * 359.97360 * 14 13 12 17 17 C 1.50704 * 109.46778 * 90.00501 * 16 14 13 18 18 H 1.07999 * 120.00078 * 359.97438 * 17 16 14 19 19 C 1.37882 * 119.99968 * 180.02562 * 17 16 14 20 20 N 1.31522 * 119.99754 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47058 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47316 * 119.99325 * 21 19 17 24 24 H 1.48500 * 109.46874 * 239.99562 * 21 19 17 25 25 C 1.38910 * 119.85439 * 359.72927 * 13 12 11 26 26 C 1.38108 * 119.92209 * 359.97438 * 25 13 12 27 27 H 1.09005 * 109.46761 * 64.08068 * 1 2 3 28 28 H 1.09004 * 109.47392 * 184.07924 * 1 2 3 29 29 H 1.08997 * 109.47420 * 304.08135 * 1 2 3 30 30 H 1.09003 * 109.47258 * 239.99665 * 2 1 3 31 31 H 1.09008 * 109.46856 * 119.99829 * 2 1 3 32 32 H 1.09004 * 109.47051 * 48.37683 * 4 3 2 33 33 H 1.08999 * 109.47355 * 168.38189 * 4 3 2 34 34 H 1.09001 * 109.46820 * 300.26890 * 5 4 3 35 35 H 1.08997 * 109.47565 * 60.27525 * 5 4 3 36 36 H 1.09000 * 115.55225 * 29.40739 * 6 5 4 37 37 H 1.09005 * 117.50061 * 359.97438 * 7 6 5 38 38 H 1.08999 * 117.50177 * 145.01946 * 7 6 5 39 39 H 1.09006 * 117.49729 * 214.97305 * 8 6 5 40 40 H 1.09000 * 117.50181 * 359.97438 * 8 6 5 41 41 H 1.09006 * 109.47025 * 186.04946 * 9 3 2 42 42 H 1.08998 * 109.47232 * 306.04483 * 9 3 2 43 43 H 1.08000 * 119.96275 * 359.96821 * 11 10 9 44 44 H 1.08001 * 120.03998 * 180.27305 * 12 11 10 45 45 H 1.09007 * 109.46571 * 89.99747 * 15 14 13 46 46 H 1.08998 * 109.47347 * 209.99661 * 15 14 13 47 47 H 1.08998 * 109.47330 * 330.00416 * 15 14 13 48 48 H 1.08993 * 109.47221 * 210.00000 * 16 14 13 49 49 H 1.08997 * 109.47478 * 330.00267 * 16 14 13 50 50 H 0.97000 * 119.99308 * 180.02562 * 20 19 17 51 51 H 1.07997 * 120.03655 * 179.97438 * 25 13 12 52 52 H 1.07995 * 119.96046 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5706 2.1021 -1.2008 5 6 2.3289 1.5773 -2.4217 6 6 1.8662 2.3290 -3.6715 7 6 1.1644 1.5192 -4.7636 8 6 2.5908 2.0289 -4.9851 9 6 1.6049 2.0900 1.2201 10 6 2.2837 1.4698 2.4141 11 6 1.6740 0.4296 3.0911 12 6 2.2958 -0.1448 4.1823 13 6 3.5301 0.3310 4.6063 14 7 4.1595 -0.2443 5.7127 15 6 5.4615 0.2584 6.1581 16 6 3.5177 -1.3502 6.4275 17 6 3.9491 -2.6595 5.8186 18 1 4.6326 -2.6670 4.9824 19 6 3.4703 -3.8478 6.3283 20 7 2.6376 -3.8386 7.3462 21 14 4.0044 -5.4707 5.5730 22 1 4.9380 -5.2097 4.4480 23 1 4.6873 -6.2948 6.6024 24 1 2.8121 -6.1977 5.0679 25 6 4.1373 1.3798 3.9273 26 6 3.5127 1.9455 2.8332 27 1 -0.3633 0.4492 -0.9244 28 1 -0.3634 -1.0251 0.0731 29 1 -0.3634 0.5758 0.8511 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8901 32 1 0.5015 1.9423 -1.3410 33 1 1.7662 3.1678 -1.0821 34 1 3.3984 1.7326 -2.2795 35 1 2.1294 0.5126 -2.5434 36 1 1.5263 3.3514 -3.5063 37 1 1.0328 0.4508 -4.5919 38 1 0.3633 2.0089 -5.3171 39 1 2.7273 2.8539 -5.6843 40 1 3.3974 1.2963 -4.9590 41 1 1.8872 3.1403 1.1466 42 1 0.5239 2.0116 1.3354 43 1 0.7121 0.0634 2.7639 44 1 1.8211 -0.9601 4.7080 45 1 5.3132 1.0559 6.8863 46 1 6.0264 -0.5527 6.6174 47 1 6.0135 0.6463 5.3020 48 1 3.8112 -1.3234 7.4769 49 1 2.4348 -1.2529 6.3505 50 1 2.3011 -4.6747 7.7050 51 1 5.0967 1.7523 4.2547 52 1 3.9840 2.7612 2.3051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761225401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:45 Heat of formation + Delta-G solvation = 55.085658 kcal Electronic energy + Delta-G solvation = -26329.100864 eV Core-core repulsion = 22908.121594 eV Total energy + Delta-G solvation = -3420.979270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.41322 -38.37077 -37.25205 -35.42514 -32.73504 -31.36521 -30.88121 -30.28124 -28.50971 -27.77534 -25.76052 -24.35316 -23.95466 -22.64429 -22.32036 -21.50011 -20.71408 -20.00270 -19.33493 -16.61094 -16.42538 -16.15945 -15.85942 -15.76713 -15.07034 -14.78842 -14.26468 -14.14859 -13.99421 -13.77178 -13.65363 -13.17569 -12.92309 -12.84150 -12.74396 -12.18776 -12.10919 -11.94536 -11.87058 -11.76672 -11.51768 -11.46243 -11.37411 -11.23890 -11.06272 -10.92421 -10.74119 -10.70449 -10.66670 -10.28596 -10.24748 -10.04085 -9.84914 -9.72108 -8.80387 -8.50753 -8.23489 -8.11593 -6.43945 -6.00558 -4.16991 2.14653 2.26559 3.25200 3.33372 3.38735 3.54018 3.96985 4.18162 4.41846 4.51636 4.65425 4.67689 4.70882 4.96805 5.08436 5.14832 5.21725 5.30306 5.32790 5.35077 5.36824 5.38991 5.53171 5.55975 5.63430 5.65432 5.69313 5.70498 5.80273 5.84305 5.85808 5.94832 6.04425 6.05635 6.10350 6.13532 6.15165 6.30672 6.34755 6.43790 6.47673 6.68499 6.96936 7.04905 7.15562 7.22689 7.24856 7.30821 7.40533 7.64306 7.81768 8.16422 8.28983 8.51668 8.92748 9.49864 10.95734 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.002753 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.551013 B =10166.702644 C =11114.731298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 N -0.530 5.530 4 C 0.053 3.947 5 C -0.084 4.084 6 C -0.149 4.149 7 C -0.184 4.184 8 C -0.182 4.182 9 C 0.107 3.893 10 C -0.165 4.165 11 C -0.067 4.067 12 C -0.188 4.188 13 C 0.240 3.760 14 N -0.616 5.616 15 C 0.099 3.901 16 C 0.249 3.751 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.222 4.222 26 C -0.053 4.053 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.029 0.971 49 H 0.035 0.965 50 H 0.263 0.737 51 H 0.112 0.888 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 13.001 -17.469 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.083 4.083 3 N -0.253 5.253 4 C -0.075 4.075 5 C -0.122 4.122 6 C -0.168 4.168 7 C -0.221 4.221 8 C -0.219 4.219 9 C -0.020 4.020 10 C -0.168 4.168 11 C -0.087 4.087 12 C -0.210 4.210 13 C 0.133 3.867 14 N -0.322 5.322 15 C -0.045 4.045 16 C 0.129 3.871 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.245 4.245 26 C -0.072 4.072 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.125 0.875 44 H 0.148 0.852 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.130 0.870 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.056 12.763 -17.139 21.468 hybrid contribution -0.606 -1.091 -0.340 1.293 sum -2.663 11.673 -17.479 21.186 Atomic orbital electron populations 1.22433 0.98735 1.02382 1.01648 1.22209 0.92468 0.90358 1.03273 1.62264 1.59523 1.02276 1.01268 1.22130 0.97367 0.98021 0.90010 1.21149 1.00682 0.98992 0.91340 1.22319 1.04196 1.00060 0.90223 1.23047 0.95521 1.00227 1.03256 1.22962 0.95560 1.03602 0.99781 1.20867 0.96723 0.96812 0.87593 1.19116 0.97465 1.01276 0.98933 1.20666 0.98467 0.94907 0.94643 1.20841 0.96087 1.03862 1.00248 1.17951 0.91383 0.90543 0.86777 1.47084 1.19463 1.36334 1.29324 1.21464 0.85753 0.98693 0.98632 1.19277 0.93594 0.82694 0.91538 1.21623 1.27944 0.90755 1.16453 0.92210 1.24970 0.94961 0.99264 0.94952 1.69946 1.31934 1.27240 1.24335 0.86477 0.78574 0.83423 0.79228 1.19690 1.20963 1.20866 1.20558 1.01800 1.01517 1.00658 1.20473 0.93789 0.98153 0.94788 0.92803 0.92133 0.92187 0.91227 0.89505 0.94357 0.91305 0.90798 0.91839 0.87991 0.88875 0.89144 0.89038 0.88789 0.91112 0.94426 0.87503 0.85218 0.94676 0.91514 0.92673 0.95251 0.94667 0.92735 0.86986 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 9.13 37.15 0.34 -1.77 16 2 C 0.04 0.55 5.56 -3.82 -0.02 0.53 16 3 N -0.53 -6.45 4.66 -236.07 -1.10 -7.55 16 4 C 0.05 0.52 4.78 -3.82 -0.02 0.50 16 5 C -0.08 -0.78 5.53 -26.73 -0.15 -0.93 16 6 C -0.15 -1.20 5.73 -90.62 -0.52 -1.72 16 7 C -0.18 -1.39 10.18 -26.69 -0.27 -1.66 16 8 C -0.18 -1.37 10.25 -26.69 -0.27 -1.64 16 9 C 0.11 1.35 4.92 -4.98 -0.02 1.33 16 10 C -0.16 -2.55 4.88 -104.59 -0.51 -3.07 16 11 C -0.07 -1.15 7.92 -39.61 -0.31 -1.46 16 12 C -0.19 -3.80 9.21 -39.38 -0.36 -4.16 16 13 C 0.24 4.90 6.55 -83.78 -0.55 4.35 16 14 N -0.62 -13.30 2.99 -181.00 -0.54 -13.84 16 15 C 0.10 1.75 10.19 59.85 0.61 2.36 16 16 C 0.25 6.26 4.91 -5.19 -0.03 6.24 16 17 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16 18 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.06 1.67 5.46 -17.81 -0.10 1.57 16 20 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16 21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16 26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 27 H 0.05 0.54 6.40 -51.93 -0.33 0.20 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.68 5.62 -51.93 -0.29 0.39 16 30 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16 31 H 0.09 1.29 5.98 -51.92 -0.31 0.97 16 32 H 0.04 0.38 5.89 -51.93 -0.31 0.07 16 33 H 0.07 0.65 7.82 -51.93 -0.41 0.24 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.62 6.47 -51.93 -0.34 0.28 16 36 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.82 7.81 -51.93 -0.41 0.42 16 42 H 0.04 0.46 5.95 -51.93 -0.31 0.15 16 43 H 0.11 1.65 7.35 -52.49 -0.39 1.26 16 44 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 45 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.94 6.20 -51.93 -0.32 0.61 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.11 1.80 6.14 -52.49 -0.32 1.47 16 52 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -28.43 401.19 -12.03 -40.47 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.90 Total: 3.30 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -3.26 Total: -19.80 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.91 Total: -46.34 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.43 -12.03 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761225401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.551 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds