Wall clock time and date at job start Tue Mar 31 2020 11:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.47279 * 2 1 4 4 C 1.46899 * 110.99824 * 298.88272 * 3 2 1 5 5 C 1.53006 * 109.47034 * 288.38664 * 4 3 2 6 6 C 1.53005 * 109.47045 * 180.27830 * 5 4 3 7 7 C 1.53001 * 117.49484 * 243.74813 * 6 5 4 8 8 C 1.52991 * 117.49764 * 175.08496 * 6 5 4 9 9 C 1.46890 * 111.00004 * 62.83761 * 3 2 1 10 10 C 1.50701 * 109.47580 * 66.04649 * 9 3 2 11 11 C 1.38278 * 119.92603 * 269.73197 * 10 9 3 12 12 C 1.38108 * 120.07593 * 179.72501 * 11 10 9 13 13 C 1.38913 * 119.92033 * 0.54012 * 12 11 10 14 14 N 1.39682 * 120.07088 * 179.75364 * 13 12 11 15 15 C 1.46498 * 119.99749 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00081 * 359.97360 * 14 13 12 17 17 C 1.50704 * 109.46778 * 90.00501 * 16 14 13 18 18 H 1.07999 * 120.00078 * 359.97438 * 17 16 14 19 19 C 1.37882 * 119.99968 * 180.02562 * 17 16 14 20 20 N 1.31522 * 119.99754 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47058 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47316 * 119.99325 * 21 19 17 24 24 H 1.48500 * 109.46874 * 239.99562 * 21 19 17 25 25 C 1.38910 * 119.85439 * 359.72927 * 13 12 11 26 26 C 1.38108 * 119.92209 * 359.97438 * 25 13 12 27 27 H 1.09005 * 109.46761 * 64.08068 * 1 2 3 28 28 H 1.09004 * 109.47392 * 184.07924 * 1 2 3 29 29 H 1.08997 * 109.47420 * 304.08135 * 1 2 3 30 30 H 1.09003 * 109.47258 * 239.99665 * 2 1 3 31 31 H 1.09008 * 109.46856 * 119.99829 * 2 1 3 32 32 H 1.09004 * 109.47051 * 48.37683 * 4 3 2 33 33 H 1.08999 * 109.47355 * 168.38189 * 4 3 2 34 34 H 1.09001 * 109.46820 * 300.26890 * 5 4 3 35 35 H 1.08997 * 109.47565 * 60.27525 * 5 4 3 36 36 H 1.09000 * 115.55225 * 29.40739 * 6 5 4 37 37 H 1.09005 * 117.50061 * 359.97438 * 7 6 5 38 38 H 1.08999 * 117.50177 * 145.01946 * 7 6 5 39 39 H 1.09006 * 117.49729 * 214.97305 * 8 6 5 40 40 H 1.09000 * 117.50181 * 359.97438 * 8 6 5 41 41 H 1.09006 * 109.47025 * 186.04946 * 9 3 2 42 42 H 1.08998 * 109.47232 * 306.04483 * 9 3 2 43 43 H 1.08000 * 119.96275 * 359.96821 * 11 10 9 44 44 H 1.08001 * 120.03998 * 180.27305 * 12 11 10 45 45 H 1.09007 * 109.46571 * 89.99747 * 15 14 13 46 46 H 1.08998 * 109.47347 * 209.99661 * 15 14 13 47 47 H 1.08998 * 109.47330 * 330.00416 * 15 14 13 48 48 H 1.08993 * 109.47221 * 210.00000 * 16 14 13 49 49 H 1.08997 * 109.47478 * 330.00267 * 16 14 13 50 50 H 0.97000 * 119.99308 * 180.02562 * 20 19 17 51 51 H 1.07997 * 120.03655 * 179.97438 * 25 13 12 52 52 H 1.07995 * 119.96046 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5706 2.1021 -1.2008 5 6 2.3289 1.5773 -2.4217 6 6 1.8662 2.3290 -3.6715 7 6 1.1644 1.5192 -4.7636 8 6 2.5908 2.0289 -4.9851 9 6 1.6049 2.0900 1.2201 10 6 2.2837 1.4698 2.4141 11 6 1.6740 0.4296 3.0911 12 6 2.2958 -0.1448 4.1823 13 6 3.5301 0.3310 4.6063 14 7 4.1595 -0.2443 5.7127 15 6 5.4615 0.2584 6.1581 16 6 3.5177 -1.3502 6.4275 17 6 3.9491 -2.6595 5.8186 18 1 4.6326 -2.6670 4.9824 19 6 3.4703 -3.8478 6.3283 20 7 2.6376 -3.8386 7.3462 21 14 4.0044 -5.4707 5.5730 22 1 4.9380 -5.2097 4.4480 23 1 4.6873 -6.2948 6.6024 24 1 2.8121 -6.1977 5.0679 25 6 4.1373 1.3798 3.9273 26 6 3.5127 1.9455 2.8332 27 1 -0.3633 0.4492 -0.9244 28 1 -0.3634 -1.0251 0.0731 29 1 -0.3634 0.5758 0.8511 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8901 32 1 0.5015 1.9423 -1.3410 33 1 1.7662 3.1678 -1.0821 34 1 3.3984 1.7326 -2.2795 35 1 2.1294 0.5126 -2.5434 36 1 1.5263 3.3514 -3.5063 37 1 1.0328 0.4508 -4.5919 38 1 0.3633 2.0089 -5.3171 39 1 2.7273 2.8539 -5.6843 40 1 3.3974 1.2963 -4.9590 41 1 1.8872 3.1403 1.1466 42 1 0.5239 2.0116 1.3354 43 1 0.7121 0.0634 2.7639 44 1 1.8211 -0.9601 4.7080 45 1 5.3132 1.0559 6.8863 46 1 6.0264 -0.5527 6.6174 47 1 6.0135 0.6463 5.3020 48 1 3.8112 -1.3234 7.4769 49 1 2.4348 -1.2529 6.3505 50 1 2.3011 -4.6747 7.7050 51 1 5.0967 1.7523 4.2547 52 1 3.9840 2.7612 2.3051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761225401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:44 Heat of formation + Delta-G solvation = 42.152689 kcal Electronic energy + Delta-G solvation = -26329.661680 eV Core-core repulsion = 22908.121594 eV Total energy + Delta-G solvation = -3421.540086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66892 -39.40550 -38.09368 -36.88010 -34.76419 -32.34959 -32.08607 -31.61595 -29.76107 -29.46291 -27.10650 -25.82177 -24.98998 -23.81297 -23.18223 -22.96532 -21.60762 -20.99855 -20.54436 -18.63912 -18.04874 -17.11289 -16.88515 -16.65750 -16.43915 -16.20791 -15.78805 -15.32669 -15.09035 -14.96283 -14.78221 -14.45474 -14.25426 -14.06315 -13.98555 -13.81878 -13.22634 -13.16768 -13.02868 -12.98222 -12.82450 -12.64689 -12.54623 -12.46967 -12.32680 -12.27025 -12.17086 -11.97373 -11.75902 -11.71019 -11.58234 -11.34154 -11.00829 -10.68892 -10.64976 -10.37218 -9.62427 -9.07672 -8.36082 -7.77846 -6.37647 0.73447 0.87426 1.35099 1.36750 1.49219 2.33932 2.64911 2.89593 2.99802 3.05568 3.37887 3.84496 4.02776 4.07252 4.10646 4.11652 4.18047 4.27101 4.30796 4.40324 4.44744 4.48592 4.53920 4.58147 4.66766 4.69488 4.73176 4.73541 4.80960 4.82464 4.88074 4.92847 5.01572 5.01966 5.07544 5.13794 5.15826 5.20331 5.20820 5.26126 5.30371 5.35388 5.38664 5.52173 5.60551 5.70647 5.71325 5.95075 6.07305 6.20829 6.25686 6.34129 6.51315 6.83488 6.95674 7.34233 8.82919 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.002753 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.551013 B =10166.702644 C =11114.731298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 N -0.539 5.539 4 C 0.056 3.944 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.184 4.184 8 C -0.183 4.183 9 C 0.109 3.891 10 C -0.152 4.152 11 C -0.065 4.065 12 C -0.216 4.216 13 C 0.211 3.789 14 N -0.633 5.633 15 C 0.098 3.902 16 C 0.267 3.733 17 C -0.538 4.538 18 H 0.047 0.953 19 C 0.012 3.988 20 N -0.927 5.927 21 Si 0.961 3.039 22 H -0.271 1.271 23 H -0.274 1.274 24 H -0.277 1.277 25 C -0.218 4.218 26 C -0.050 4.050 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.131 0.869 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 14.629 -20.093 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.081 4.081 3 N -0.262 5.262 4 C -0.071 4.071 5 C -0.116 4.116 6 C -0.171 4.171 7 C -0.221 4.221 8 C -0.220 4.220 9 C -0.017 4.017 10 C -0.154 4.154 11 C -0.084 4.084 12 C -0.239 4.239 13 C 0.106 3.894 14 N -0.341 5.341 15 C -0.044 4.044 16 C 0.145 3.855 17 C -0.577 4.577 18 H 0.066 0.934 19 C -0.187 4.187 20 N -0.567 5.567 21 Si 0.786 3.214 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.202 1.202 25 C -0.240 4.240 26 C -0.069 4.069 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.135 0.865 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.149 0.851 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.730 14.423 -19.788 24.548 hybrid contribution -0.749 -1.509 0.370 1.725 sum -2.479 12.913 -19.418 23.451 Atomic orbital electron populations 1.22358 0.97552 1.02478 1.02114 1.22114 0.93417 0.90570 1.02047 1.62219 1.59960 1.02168 1.01874 1.22160 0.97642 0.98322 0.88969 1.21061 1.00005 0.98699 0.91819 1.22295 1.04684 1.00363 0.89781 1.23102 0.95875 1.00097 1.03036 1.23029 0.95481 1.03862 0.99661 1.20876 0.96825 0.97503 0.86532 1.19479 0.97136 0.99722 0.99088 1.20781 0.98851 0.95154 0.93638 1.20735 0.97079 1.04197 1.01872 1.18220 0.91850 0.92024 0.87276 1.46951 1.20827 1.36206 1.30109 1.21590 0.84233 0.98727 0.99894 1.18761 0.92380 0.83662 0.90692 1.21789 1.27690 0.92119 1.16098 0.93427 1.25783 0.94912 1.02702 0.95339 1.70048 1.32847 1.28291 1.25467 0.85460 0.78269 0.79186 0.78491 1.19559 1.19914 1.20245 1.20797 1.02399 1.00291 1.00545 1.20868 0.93633 0.98406 0.94004 0.91456 0.92192 0.92579 0.90821 0.92374 0.93820 0.90136 0.91796 0.92640 0.87126 0.89245 0.88172 0.88004 0.89152 0.89076 0.93743 0.86450 0.88866 0.92933 0.92585 0.90418 0.97311 0.97163 0.92407 0.85094 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.76 9.13 71.98 0.66 -3.10 16 2 C 0.05 1.09 5.56 86.30 0.48 1.57 16 3 N -0.54 -11.77 4.66 -900.79 -4.20 -15.97 16 4 C 0.06 0.95 4.78 86.31 0.41 1.36 16 5 C -0.08 -1.28 5.53 30.60 0.17 -1.11 16 6 C -0.15 -2.08 5.73 -10.79 -0.06 -2.14 16 7 C -0.18 -2.38 10.18 30.62 0.31 -2.07 16 8 C -0.18 -2.37 10.25 30.62 0.31 -2.05 16 9 C 0.11 2.44 4.92 85.56 0.42 2.86 16 10 C -0.15 -4.41 4.88 -19.84 -0.10 -4.51 16 11 C -0.07 -2.23 7.92 22.25 0.18 -2.06 16 12 C -0.22 -9.18 9.21 22.40 0.21 -8.98 16 13 C 0.21 8.78 6.55 38.21 0.25 9.03 16 14 N -0.63 -28.28 2.99 -726.57 -2.17 -30.45 16 15 C 0.10 3.50 10.19 127.77 1.30 4.80 16 16 C 0.27 14.25 4.91 85.64 0.42 14.67 16 17 C -0.54 -30.68 9.39 25.60 0.24 -30.44 16 18 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 19 C 0.01 0.67 5.46 84.65 0.46 1.13 16 20 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 21 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.22 -7.35 9.21 22.40 0.21 -7.15 16 26 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 27 H 0.07 1.18 6.40 -2.38 -0.02 1.16 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.17 5.62 -2.39 -0.01 1.16 16 30 H 0.07 1.65 6.65 -2.39 -0.02 1.64 16 31 H 0.06 1.71 5.98 -2.38 -0.01 1.69 16 32 H 0.04 0.71 5.89 -2.39 -0.01 0.70 16 33 H 0.08 1.20 7.82 -2.39 -0.02 1.18 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 0.99 6.47 -2.39 -0.02 0.98 16 36 H 0.11 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.09 1.22 8.03 -2.38 -0.02 1.20 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.72 7.81 -2.38 -0.02 1.70 16 42 H 0.04 0.96 5.95 -2.39 -0.01 0.94 16 43 H 0.12 3.67 7.35 -2.91 -0.02 3.65 16 44 H 0.09 4.58 6.14 -2.91 -0.02 4.56 16 45 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 47 H 0.08 2.36 6.20 -2.39 -0.01 2.34 16 48 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 49 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16 50 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 51 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 52 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -63.26 401.19 2.91 -60.35 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.88 Total: 23.44 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 6.08 Total: -29.42 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -6.09 Total: -101.01 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.26 2.91 -60.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761225401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.500 kcal (2) G-P(sol) polarization free energy of solvation -63.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds