Wall clock time and date at job start Tue Mar 31 2020 11:47:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46905 * 109.47279 * 2 1
4 4 C 1.46899 * 110.99824 * 298.88272 * 3 2 1
5 5 C 1.53006 * 109.47034 * 288.38664 * 4 3 2
6 6 C 1.53005 * 109.47045 * 180.27830 * 5 4 3
7 7 C 1.53001 * 117.49484 * 243.74813 * 6 5 4
8 8 C 1.52991 * 117.49764 * 175.08496 * 6 5 4
9 9 C 1.46890 * 111.00004 * 62.83761 * 3 2 1
10 10 C 1.50701 * 109.47580 * 66.04649 * 9 3 2
11 11 C 1.38278 * 119.92603 * 269.73197 * 10 9 3
12 12 C 1.38108 * 120.07593 * 179.72501 * 11 10 9
13 13 C 1.38913 * 119.92033 * 0.54012 * 12 11 10
14 14 N 1.39682 * 120.07088 * 179.75364 * 13 12 11
15 15 C 1.46498 * 119.99749 * 179.97438 * 14 13 12
16 16 C 1.46495 * 120.00081 * 359.97360 * 14 13 12
17 17 C 1.50704 * 109.46778 * 90.00501 * 16 14 13
18 18 H 1.07999 * 120.00078 * 359.97438 * 17 16 14
19 19 C 1.37882 * 119.99968 * 180.02562 * 17 16 14
20 20 N 1.31522 * 119.99754 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00101 * 179.97438 * 19 17 16
22 22 H 1.48504 * 109.47058 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.47316 * 119.99325 * 21 19 17
24 24 H 1.48500 * 109.46874 * 239.99562 * 21 19 17
25 25 C 1.38910 * 119.85439 * 359.72927 * 13 12 11
26 26 C 1.38108 * 119.92209 * 359.97438 * 25 13 12
27 27 H 1.09005 * 109.46761 * 64.08068 * 1 2 3
28 28 H 1.09004 * 109.47392 * 184.07924 * 1 2 3
29 29 H 1.08997 * 109.47420 * 304.08135 * 1 2 3
30 30 H 1.09003 * 109.47258 * 239.99665 * 2 1 3
31 31 H 1.09008 * 109.46856 * 119.99829 * 2 1 3
32 32 H 1.09004 * 109.47051 * 48.37683 * 4 3 2
33 33 H 1.08999 * 109.47355 * 168.38189 * 4 3 2
34 34 H 1.09001 * 109.46820 * 300.26890 * 5 4 3
35 35 H 1.08997 * 109.47565 * 60.27525 * 5 4 3
36 36 H 1.09000 * 115.55225 * 29.40739 * 6 5 4
37 37 H 1.09005 * 117.50061 * 359.97438 * 7 6 5
38 38 H 1.08999 * 117.50177 * 145.01946 * 7 6 5
39 39 H 1.09006 * 117.49729 * 214.97305 * 8 6 5
40 40 H 1.09000 * 117.50181 * 359.97438 * 8 6 5
41 41 H 1.09006 * 109.47025 * 186.04946 * 9 3 2
42 42 H 1.08998 * 109.47232 * 306.04483 * 9 3 2
43 43 H 1.08000 * 119.96275 * 359.96821 * 11 10 9
44 44 H 1.08001 * 120.03998 * 180.27305 * 12 11 10
45 45 H 1.09007 * 109.46571 * 89.99747 * 15 14 13
46 46 H 1.08998 * 109.47347 * 209.99661 * 15 14 13
47 47 H 1.08998 * 109.47330 * 330.00416 * 15 14 13
48 48 H 1.08993 * 109.47221 * 210.00000 * 16 14 13
49 49 H 1.08997 * 109.47478 * 330.00267 * 16 14 13
50 50 H 0.97000 * 119.99308 * 180.02562 * 20 19 17
51 51 H 1.07997 * 120.03655 * 179.97438 * 25 13 12
52 52 H 1.07995 * 119.96046 * 179.97438 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.5706 2.1021 -1.2008
5 6 2.3289 1.5773 -2.4217
6 6 1.8662 2.3290 -3.6715
7 6 1.1644 1.5192 -4.7636
8 6 2.5908 2.0289 -4.9851
9 6 1.6049 2.0900 1.2201
10 6 2.2837 1.4698 2.4141
11 6 1.6740 0.4296 3.0911
12 6 2.2958 -0.1448 4.1823
13 6 3.5301 0.3310 4.6063
14 7 4.1595 -0.2443 5.7127
15 6 5.4615 0.2584 6.1581
16 6 3.5177 -1.3502 6.4275
17 6 3.9491 -2.6595 5.8186
18 1 4.6326 -2.6670 4.9824
19 6 3.4703 -3.8478 6.3283
20 7 2.6376 -3.8386 7.3462
21 14 4.0044 -5.4707 5.5730
22 1 4.9380 -5.2097 4.4480
23 1 4.6873 -6.2948 6.6024
24 1 2.8121 -6.1977 5.0679
25 6 4.1373 1.3798 3.9273
26 6 3.5127 1.9455 2.8332
27 1 -0.3633 0.4492 -0.9244
28 1 -0.3634 -1.0251 0.0731
29 1 -0.3634 0.5758 0.8511
30 1 1.8933 -0.5139 -0.8900
31 1 1.8932 -0.5138 0.8901
32 1 0.5015 1.9423 -1.3410
33 1 1.7662 3.1678 -1.0821
34 1 3.3984 1.7326 -2.2795
35 1 2.1294 0.5126 -2.5434
36 1 1.5263 3.3514 -3.5063
37 1 1.0328 0.4508 -4.5919
38 1 0.3633 2.0089 -5.3171
39 1 2.7273 2.8539 -5.6843
40 1 3.3974 1.2963 -4.9590
41 1 1.8872 3.1403 1.1466
42 1 0.5239 2.0116 1.3354
43 1 0.7121 0.0634 2.7639
44 1 1.8211 -0.9601 4.7080
45 1 5.3132 1.0559 6.8863
46 1 6.0264 -0.5527 6.6174
47 1 6.0135 0.6463 5.3020
48 1 3.8112 -1.3234 7.4769
49 1 2.4348 -1.2529 6.3505
50 1 2.3011 -4.6747 7.7050
51 1 5.0967 1.7523 4.2547
52 1 3.9840 2.7612 2.3051
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000761225401.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:47:44
Heat of formation + Delta-G solvation = 42.152689 kcal
Electronic energy + Delta-G solvation = -26329.661680 eV
Core-core repulsion = 22908.121594 eV
Total energy + Delta-G solvation = -3421.540086 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.66892 -39.40550 -38.09368 -36.88010 -34.76419 -32.34959 -32.08607 -31.61595
-29.76107 -29.46291 -27.10650 -25.82177 -24.98998 -23.81297 -23.18223 -22.96532
-21.60762 -20.99855 -20.54436 -18.63912 -18.04874 -17.11289 -16.88515 -16.65750
-16.43915 -16.20791 -15.78805 -15.32669 -15.09035 -14.96283 -14.78221 -14.45474
-14.25426 -14.06315 -13.98555 -13.81878 -13.22634 -13.16768 -13.02868 -12.98222
-12.82450 -12.64689 -12.54623 -12.46967 -12.32680 -12.27025 -12.17086 -11.97373
-11.75902 -11.71019 -11.58234 -11.34154 -11.00829 -10.68892 -10.64976 -10.37218
-9.62427 -9.07672 -8.36082 -7.77846 -6.37647 0.73447 0.87426 1.35099
1.36750 1.49219 2.33932 2.64911 2.89593 2.99802 3.05568 3.37887
3.84496 4.02776 4.07252 4.10646 4.11652 4.18047 4.27101 4.30796
4.40324 4.44744 4.48592 4.53920 4.58147 4.66766 4.69488 4.73176
4.73541 4.80960 4.82464 4.88074 4.92847 5.01572 5.01966 5.07544
5.13794 5.15826 5.20331 5.20820 5.26126 5.30371 5.35388 5.38664
5.52173 5.60551 5.70647 5.71325 5.95075 6.07305 6.20829 6.25686
6.34129 6.51315 6.83488 6.95674 7.34233 8.82919
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.014591 B = 0.002753 C = 0.002519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1918.551013 B =10166.702644 C =11114.731298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.047 3.953
3 N -0.539 5.539
4 C 0.056 3.944
5 C -0.078 4.078
6 C -0.153 4.153
7 C -0.184 4.184
8 C -0.183 4.183
9 C 0.109 3.891
10 C -0.152 4.152
11 C -0.065 4.065
12 C -0.216 4.216
13 C 0.211 3.789
14 N -0.633 5.633
15 C 0.098 3.902
16 C 0.267 3.733
17 C -0.538 4.538
18 H 0.047 0.953
19 C 0.012 3.988
20 N -0.927 5.927
21 Si 0.961 3.039
22 H -0.271 1.271
23 H -0.274 1.274
24 H -0.277 1.277
25 C -0.218 4.218
26 C -0.050 4.050
27 H 0.067 0.933
28 H 0.059 0.941
29 H 0.055 0.945
30 H 0.073 0.927
31 H 0.058 0.942
32 H 0.044 0.956
33 H 0.080 0.920
34 H 0.063 0.937
35 H 0.055 0.945
36 H 0.111 0.889
37 H 0.089 0.911
38 H 0.100 0.900
39 H 0.102 0.898
40 H 0.090 0.910
41 H 0.091 0.909
42 H 0.045 0.955
43 H 0.118 0.882
44 H 0.093 0.907
45 H 0.052 0.948
46 H 0.055 0.945
47 H 0.077 0.923
48 H 0.009 0.991
49 H 0.010 0.990
50 H 0.267 0.733
51 H 0.131 0.869
52 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.261 14.629 -20.093 24.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C -0.081 4.081
3 N -0.262 5.262
4 C -0.071 4.071
5 C -0.116 4.116
6 C -0.171 4.171
7 C -0.221 4.221
8 C -0.220 4.220
9 C -0.017 4.017
10 C -0.154 4.154
11 C -0.084 4.084
12 C -0.239 4.239
13 C 0.106 3.894
14 N -0.341 5.341
15 C -0.044 4.044
16 C 0.145 3.855
17 C -0.577 4.577
18 H 0.066 0.934
19 C -0.187 4.187
20 N -0.567 5.567
21 Si 0.786 3.214
22 H -0.196 1.196
23 H -0.199 1.199
24 H -0.202 1.202
25 C -0.240 4.240
26 C -0.069 4.069
27 H 0.085 0.915
28 H 0.078 0.922
29 H 0.074 0.926
30 H 0.092 0.908
31 H 0.076 0.924
32 H 0.062 0.938
33 H 0.099 0.901
34 H 0.082 0.918
35 H 0.074 0.926
36 H 0.129 0.871
37 H 0.108 0.892
38 H 0.118 0.882
39 H 0.120 0.880
40 H 0.108 0.892
41 H 0.109 0.891
42 H 0.063 0.937
43 H 0.135 0.865
44 H 0.111 0.889
45 H 0.071 0.929
46 H 0.074 0.926
47 H 0.096 0.904
48 H 0.027 0.973
49 H 0.028 0.972
50 H 0.076 0.924
51 H 0.149 0.851
52 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -1.730 14.423 -19.788 24.548
hybrid contribution -0.749 -1.509 0.370 1.725
sum -2.479 12.913 -19.418 23.451
Atomic orbital electron populations
1.22358 0.97552 1.02478 1.02114 1.22114 0.93417 0.90570 1.02047
1.62219 1.59960 1.02168 1.01874 1.22160 0.97642 0.98322 0.88969
1.21061 1.00005 0.98699 0.91819 1.22295 1.04684 1.00363 0.89781
1.23102 0.95875 1.00097 1.03036 1.23029 0.95481 1.03862 0.99661
1.20876 0.96825 0.97503 0.86532 1.19479 0.97136 0.99722 0.99088
1.20781 0.98851 0.95154 0.93638 1.20735 0.97079 1.04197 1.01872
1.18220 0.91850 0.92024 0.87276 1.46951 1.20827 1.36206 1.30109
1.21590 0.84233 0.98727 0.99894 1.18761 0.92380 0.83662 0.90692
1.21789 1.27690 0.92119 1.16098 0.93427 1.25783 0.94912 1.02702
0.95339 1.70048 1.32847 1.28291 1.25467 0.85460 0.78269 0.79186
0.78491 1.19559 1.19914 1.20245 1.20797 1.02399 1.00291 1.00545
1.20868 0.93633 0.98406 0.94004 0.91456 0.92192 0.92579 0.90821
0.92374 0.93820 0.90136 0.91796 0.92640 0.87126 0.89245 0.88172
0.88004 0.89152 0.89076 0.93743 0.86450 0.88866 0.92933 0.92585
0.90418 0.97311 0.97163 0.92407 0.85094 0.84178
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.76 9.13 71.98 0.66 -3.10 16
2 C 0.05 1.09 5.56 86.30 0.48 1.57 16
3 N -0.54 -11.77 4.66 -900.79 -4.20 -15.97 16
4 C 0.06 0.95 4.78 86.31 0.41 1.36 16
5 C -0.08 -1.28 5.53 30.60 0.17 -1.11 16
6 C -0.15 -2.08 5.73 -10.79 -0.06 -2.14 16
7 C -0.18 -2.38 10.18 30.62 0.31 -2.07 16
8 C -0.18 -2.37 10.25 30.62 0.31 -2.05 16
9 C 0.11 2.44 4.92 85.56 0.42 2.86 16
10 C -0.15 -4.41 4.88 -19.84 -0.10 -4.51 16
11 C -0.07 -2.23 7.92 22.25 0.18 -2.06 16
12 C -0.22 -9.18 9.21 22.40 0.21 -8.98 16
13 C 0.21 8.78 6.55 38.21 0.25 9.03 16
14 N -0.63 -28.28 2.99 -726.57 -2.17 -30.45 16
15 C 0.10 3.50 10.19 127.77 1.30 4.80 16
16 C 0.27 14.25 4.91 85.64 0.42 14.67 16
17 C -0.54 -30.68 9.39 25.60 0.24 -30.44 16
18 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16
19 C 0.01 0.67 5.46 84.65 0.46 1.13 16
20 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16
21 Si 0.96 44.62 29.54 68.60 2.03 46.65 16
22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16
23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16
24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
25 C -0.22 -7.35 9.21 22.40 0.21 -7.15 16
26 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16
27 H 0.07 1.18 6.40 -2.38 -0.02 1.16 16
28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16
29 H 0.06 1.17 5.62 -2.39 -0.01 1.16 16
30 H 0.07 1.65 6.65 -2.39 -0.02 1.64 16
31 H 0.06 1.71 5.98 -2.38 -0.01 1.69 16
32 H 0.04 0.71 5.89 -2.39 -0.01 0.70 16
33 H 0.08 1.20 7.82 -2.39 -0.02 1.18 16
34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.05 0.99 6.47 -2.39 -0.02 0.98 16
36 H 0.11 1.33 8.08 -2.39 -0.02 1.31 16
37 H 0.09 1.22 8.03 -2.38 -0.02 1.20 16
38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16
39 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16
40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
41 H 0.09 1.72 7.81 -2.38 -0.02 1.70 16
42 H 0.04 0.96 5.95 -2.39 -0.01 0.94 16
43 H 0.12 3.67 7.35 -2.91 -0.02 3.65 16
44 H 0.09 4.58 6.14 -2.91 -0.02 4.56 16
45 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16
46 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16
47 H 0.08 2.36 6.20 -2.39 -0.01 2.34 16
48 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16
49 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16
50 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16
51 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16
52 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16
Total: -1.00 -63.26 401.19 2.91 -60.35
By element:
Atomic # 1 Polarization: 22.56 SS G_CDS: 0.88 Total: 23.44 kcal
Atomic # 6 Polarization: -35.51 SS G_CDS: 6.08 Total: -29.42 kcal
Atomic # 7 Polarization: -94.93 SS G_CDS: -6.09 Total: -101.01 kcal
Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -63.26 2.91 -60.35 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000761225401.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.500 kcal
(2) G-P(sol) polarization free energy of solvation -63.256 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.244 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.153 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds