Wall clock time and date at job start Tue Mar 31 2020 11:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 C 1.52998 * 109.47340 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99680 * 170.00387 * 5 4 3 7 7 C 1.50703 * 109.47017 * 290.23367 * 6 5 4 8 8 C 1.38287 * 119.91985 * 95.86654 * 7 6 5 9 9 C 1.38103 * 120.07066 * 180.02562 * 8 7 6 10 10 C 1.38908 * 119.92797 * 359.97438 * 9 8 7 11 11 N 1.39671 * 120.07569 * 179.97438 * 10 9 8 12 12 C 1.46506 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.46501 * 120.00084 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47151 * 90.00080 * 13 11 10 15 15 H 1.08007 * 119.99807 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00228 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99799 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47430 * 60.00049 * 18 16 14 20 20 H 1.48505 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47106 * 300.00051 * 18 16 14 22 22 C 1.38910 * 119.85112 * 0.24973 * 10 9 8 23 23 C 1.38109 * 119.92463 * 359.49436 * 22 10 9 24 24 C 1.46906 * 110.99982 * 293.95508 * 5 4 3 25 25 C 1.53001 * 117.49856 * 239.61269 * 24 5 4 26 26 C 1.53000 * 117.49898 * 170.95272 * 24 5 4 27 27 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47506 * 300.00003 * 1 2 3 29 29 H 1.09002 * 109.46796 * 60.00374 * 1 2 3 30 30 H 1.08998 * 109.47639 * 239.99458 * 2 1 3 31 31 H 1.09002 * 109.46796 * 119.99626 * 2 1 3 32 32 H 1.08998 * 109.46928 * 59.99643 * 3 2 1 33 33 H 1.08998 * 109.47330 * 299.99864 * 3 2 1 34 34 H 1.09008 * 109.46988 * 60.00060 * 4 3 2 35 35 H 1.08998 * 109.47067 * 300.00354 * 4 3 2 36 36 H 1.09003 * 109.46937 * 170.23918 * 6 5 4 37 37 H 1.08999 * 109.47628 * 50.24402 * 6 5 4 38 38 H 1.08004 * 119.96578 * 0.03981 * 8 7 6 39 39 H 1.08002 * 120.03132 * 179.97438 * 9 8 7 40 40 H 1.08994 * 109.46908 * 270.00154 * 12 11 10 41 41 H 1.09002 * 109.47092 * 30.00096 * 12 11 10 42 42 H 1.08997 * 109.47045 * 149.99915 * 12 11 10 43 43 H 1.09006 * 109.47010 * 209.99794 * 13 11 10 44 44 H 1.09002 * 109.47335 * 330.00051 * 13 11 10 45 45 H 0.96997 * 119.99992 * 180.02562 * 17 16 14 46 46 H 1.08001 * 120.04108 * 179.73157 * 22 10 9 47 47 H 1.07997 * 119.96439 * 180.25166 * 23 22 10 48 48 H 1.09001 * 115.54969 * 25.27935 * 24 5 4 49 49 H 1.09001 * 117.49636 * 359.97438 * 25 24 5 50 50 H 1.08991 * 117.50091 * 145.01948 * 25 24 5 51 51 H 1.08994 * 117.49767 * 214.97976 * 26 24 5 52 52 H 1.09001 * 117.49728 * 359.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8275 0.0000 6 6 5.5084 2.8737 0.2387 7 6 5.7956 2.4771 1.6639 8 6 6.1386 1.1707 1.9606 9 6 6.4019 0.8038 3.2657 10 6 6.3224 1.7486 4.2808 11 7 6.5876 1.3808 5.6018 12 6 6.9495 -0.0032 5.9183 13 6 6.5038 2.3788 6.6710 14 6 5.1026 2.4049 7.2252 15 1 4.3499 1.7438 6.8215 16 6 4.7815 3.2726 8.2474 17 7 5.6982 4.0772 8.7392 18 14 3.0445 3.3055 8.9337 19 1 2.7020 1.9671 9.4784 20 1 2.9595 4.3170 10.0176 21 1 2.0912 3.6580 7.8511 22 6 5.9730 3.0590 3.9799 23 6 5.7161 3.4205 2.6719 24 6 3.7106 3.5087 -1.2539 25 6 4.8594 4.0505 -2.1069 26 6 3.9596 5.0163 -1.3318 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9329 0.9288 0.8908 36 1 5.8735 3.8855 0.0625 37 1 6.0105 2.1832 -0.4390 38 1 6.2009 0.4367 1.1708 39 1 6.6694 -0.2168 3.4967 40 1 6.0466 -0.5749 6.1323 41 1 7.4675 -0.4468 5.0680 42 1 7.6038 -0.0173 6.7899 43 1 7.2039 2.1198 7.4654 44 1 6.7549 3.3613 6.2715 45 1 5.4725 4.6874 9.4586 46 1 5.9061 3.7951 4.7673 47 1 5.4484 4.4400 2.4367 48 1 2.8384 3.1150 -1.7758 49 1 5.8741 3.9018 -1.7375 50 1 4.7428 4.0136 -3.1900 51 1 3.2515 5.6143 -1.9053 52 1 4.3820 5.5027 -0.4525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768290911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:06 Heat of formation + Delta-G solvation = 53.421322 kcal Electronic energy + Delta-G solvation = -26651.130316 eV Core-core repulsion = 23230.078875 eV Total energy + Delta-G solvation = -3421.051441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.58461 -38.47575 -35.81586 -35.55826 -33.36996 -32.62089 -30.44292 -30.35984 -28.26882 -27.75842 -25.83835 -24.28737 -23.21957 -22.62902 -22.19899 -21.49572 -21.22170 -19.90173 -19.29321 -16.86317 -16.51668 -16.29238 -15.97996 -15.23266 -15.20219 -14.50663 -14.44263 -13.99423 -13.84271 -13.66510 -13.53551 -13.14187 -12.99286 -12.89433 -12.84280 -12.24273 -12.18996 -12.09701 -11.74233 -11.59402 -11.44489 -11.37605 -11.22809 -11.08119 -11.02111 -10.90352 -10.82481 -10.65356 -10.63308 -10.38450 -10.32276 -10.22020 -9.89169 -9.72696 -8.80883 -8.48374 -8.23989 -8.05574 -6.44589 -5.99975 -4.15386 2.13319 2.22884 3.29965 3.34034 3.37869 3.65079 3.97919 4.16730 4.43139 4.58971 4.70737 4.78996 4.88716 4.94543 5.02391 5.07092 5.18244 5.23349 5.30269 5.35389 5.51294 5.53294 5.57934 5.59392 5.63376 5.68240 5.74145 5.77664 5.81204 5.85515 5.91101 5.97010 6.03196 6.04648 6.06250 6.13759 6.25967 6.30034 6.31784 6.40414 6.45649 6.65860 6.94707 7.02550 7.09425 7.17780 7.26043 7.29698 7.40244 7.62697 7.82804 8.17401 8.28301 8.50162 8.93201 9.51355 10.97496 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.003355 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.979129 B = 8344.880344 C = 8914.112997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.056 3.944 5 N -0.500 5.500 6 C 0.108 3.892 7 C -0.167 4.167 8 C -0.069 4.069 9 C -0.222 4.222 10 C 0.242 3.758 11 N -0.616 5.616 12 C 0.101 3.899 13 C 0.250 3.750 14 C -0.531 4.531 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.187 4.187 23 C -0.049 4.049 24 C 0.023 3.977 25 C -0.223 4.223 26 C -0.172 4.172 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.131 0.869 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.100 0.900 50 H 0.089 0.911 51 H 0.093 0.907 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -4.888 -20.069 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.071 4.071 5 N -0.222 5.222 6 C -0.018 4.018 7 C -0.170 4.170 8 C -0.088 4.088 9 C -0.245 4.245 10 C 0.135 3.865 11 N -0.322 5.322 12 C -0.043 4.043 13 C 0.130 3.870 14 C -0.570 4.570 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.210 4.210 23 C -0.069 4.069 24 C -0.087 4.087 25 C -0.262 4.262 26 C -0.210 4.210 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.149 0.851 47 H 0.128 0.872 48 H 0.132 0.868 49 H 0.118 0.882 50 H 0.107 0.893 51 H 0.112 0.888 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.731 -4.570 -19.269 19.991 hybrid contribution -0.639 -0.338 -0.082 0.728 sum -3.370 -4.908 -19.350 20.245 Atomic orbital electron populations 1.21755 0.95918 1.01371 1.01800 1.21487 0.95825 0.96969 1.01910 1.21625 0.94763 0.96364 1.02539 1.22166 0.95290 0.88581 1.01111 1.61886 1.14143 1.15842 1.30285 1.20943 0.86802 1.00605 0.93490 1.19132 1.09592 0.94140 0.94142 1.20501 0.98226 0.94835 0.95232 1.20506 1.12684 0.98812 0.92502 1.17933 0.91080 0.92920 0.84576 1.47090 1.71173 1.09482 1.04434 1.21451 0.99200 0.83770 0.99928 1.19288 0.96811 0.86860 0.84030 1.21539 0.96221 1.21150 1.18074 0.92338 1.24947 0.97456 0.95198 0.96395 1.69916 1.33401 1.23194 1.26981 0.86590 0.84677 0.77764 0.78643 1.20261 1.21184 1.20041 1.20892 1.07430 0.95742 0.96928 1.20601 0.96210 0.98294 0.91788 1.22690 0.98784 0.95522 0.91693 1.23593 0.97307 1.06803 0.98505 1.23052 1.02829 0.92745 1.02370 0.92963 0.92550 0.93017 0.92454 0.91767 0.90932 0.92428 0.95340 0.89652 0.90503 0.94661 0.87822 0.87004 0.94142 0.92867 0.92087 0.95266 0.94657 0.92606 0.85112 0.87166 0.86778 0.88182 0.89258 0.88840 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.12 -1.24 5.20 -26.73 -0.14 -1.38 16 4 C 0.06 0.66 4.77 -3.83 -0.02 0.64 16 5 N -0.50 -6.27 4.67 -228.08 -1.06 -7.34 16 6 C 0.11 1.39 3.76 -4.97 -0.02 1.37 16 7 C -0.17 -2.60 4.86 -104.58 -0.51 -3.11 16 8 C -0.07 -1.06 8.21 -39.61 -0.33 -1.39 16 9 C -0.22 -3.85 9.21 -39.38 -0.36 -4.21 16 10 C 0.24 4.92 6.55 -83.79 -0.55 4.37 16 11 N -0.62 -13.26 2.99 -181.00 -0.54 -13.80 16 12 C 0.10 1.78 10.23 59.85 0.61 2.39 16 13 C 0.25 6.30 4.95 -5.19 -0.03 6.28 16 14 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 15 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.19 -3.84 9.20 -39.38 -0.36 -4.20 16 23 C -0.05 -0.87 9.71 -39.61 -0.38 -1.25 16 24 C 0.02 0.24 5.78 -67.71 -0.39 -0.15 16 25 C -0.22 -2.10 9.51 -26.69 -0.25 -2.36 16 26 C -0.17 -1.71 10.01 -26.69 -0.27 -1.98 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.57 6.45 -51.93 -0.33 0.24 16 34 H 0.03 0.31 8.12 -51.92 -0.42 -0.11 16 35 H 0.09 1.15 6.06 -51.93 -0.31 0.84 16 36 H 0.08 0.95 5.97 -51.93 -0.31 0.64 16 37 H 0.04 0.43 7.84 -51.93 -0.41 0.02 16 38 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.11 1.76 6.14 -52.49 -0.32 1.43 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.79 6.20 -51.93 -0.32 0.47 16 42 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 43 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 44 H 0.04 0.94 6.21 -51.93 -0.32 0.62 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.13 2.97 6.15 -52.49 -0.32 2.64 16 47 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 48 H 0.11 1.11 6.38 -51.93 -0.33 0.78 16 49 H 0.10 0.98 5.87 -51.93 -0.31 0.67 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.10 1.08 7.86 -51.93 -0.41 0.67 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -28.64 405.00 -12.13 -40.77 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -9.14 Total: 3.48 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.20 Total: -20.63 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.87 Total: -46.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.64 -12.13 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768290911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.190 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds