Wall clock time and date at job start Tue Mar 31 2020 11:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 C 1.52998 * 109.47340 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99680 * 170.00387 * 5 4 3 7 7 C 1.50703 * 109.47017 * 290.23367 * 6 5 4 8 8 C 1.38287 * 119.91985 * 95.86654 * 7 6 5 9 9 C 1.38103 * 120.07066 * 180.02562 * 8 7 6 10 10 C 1.38908 * 119.92797 * 359.97438 * 9 8 7 11 11 N 1.39671 * 120.07569 * 179.97438 * 10 9 8 12 12 C 1.46506 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.46501 * 120.00084 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47151 * 90.00080 * 13 11 10 15 15 H 1.08007 * 119.99807 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00228 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99799 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47430 * 60.00049 * 18 16 14 20 20 H 1.48505 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47106 * 300.00051 * 18 16 14 22 22 C 1.38910 * 119.85112 * 0.24973 * 10 9 8 23 23 C 1.38109 * 119.92463 * 359.49436 * 22 10 9 24 24 C 1.46906 * 110.99982 * 293.95508 * 5 4 3 25 25 C 1.53001 * 117.49856 * 239.61269 * 24 5 4 26 26 C 1.53000 * 117.49898 * 170.95272 * 24 5 4 27 27 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47506 * 300.00003 * 1 2 3 29 29 H 1.09002 * 109.46796 * 60.00374 * 1 2 3 30 30 H 1.08998 * 109.47639 * 239.99458 * 2 1 3 31 31 H 1.09002 * 109.46796 * 119.99626 * 2 1 3 32 32 H 1.08998 * 109.46928 * 59.99643 * 3 2 1 33 33 H 1.08998 * 109.47330 * 299.99864 * 3 2 1 34 34 H 1.09008 * 109.46988 * 60.00060 * 4 3 2 35 35 H 1.08998 * 109.47067 * 300.00354 * 4 3 2 36 36 H 1.09003 * 109.46937 * 170.23918 * 6 5 4 37 37 H 1.08999 * 109.47628 * 50.24402 * 6 5 4 38 38 H 1.08004 * 119.96578 * 0.03981 * 8 7 6 39 39 H 1.08002 * 120.03132 * 179.97438 * 9 8 7 40 40 H 1.08994 * 109.46908 * 270.00154 * 12 11 10 41 41 H 1.09002 * 109.47092 * 30.00096 * 12 11 10 42 42 H 1.08997 * 109.47045 * 149.99915 * 12 11 10 43 43 H 1.09006 * 109.47010 * 209.99794 * 13 11 10 44 44 H 1.09002 * 109.47335 * 330.00051 * 13 11 10 45 45 H 0.96997 * 119.99992 * 180.02562 * 17 16 14 46 46 H 1.08001 * 120.04108 * 179.73157 * 22 10 9 47 47 H 1.07997 * 119.96439 * 180.25166 * 23 22 10 48 48 H 1.09001 * 115.54969 * 25.27935 * 24 5 4 49 49 H 1.09001 * 117.49636 * 359.97438 * 25 24 5 50 50 H 1.08991 * 117.50091 * 145.01948 * 25 24 5 51 51 H 1.08994 * 117.49767 * 214.97976 * 26 24 5 52 52 H 1.09001 * 117.49728 * 359.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8275 0.0000 6 6 5.5084 2.8737 0.2387 7 6 5.7956 2.4771 1.6639 8 6 6.1386 1.1707 1.9606 9 6 6.4019 0.8038 3.2657 10 6 6.3224 1.7486 4.2808 11 7 6.5876 1.3808 5.6018 12 6 6.9495 -0.0032 5.9183 13 6 6.5038 2.3788 6.6710 14 6 5.1026 2.4049 7.2252 15 1 4.3499 1.7438 6.8215 16 6 4.7815 3.2726 8.2474 17 7 5.6982 4.0772 8.7392 18 14 3.0445 3.3055 8.9337 19 1 2.7020 1.9671 9.4784 20 1 2.9595 4.3170 10.0176 21 1 2.0912 3.6580 7.8511 22 6 5.9730 3.0590 3.9799 23 6 5.7161 3.4205 2.6719 24 6 3.7106 3.5087 -1.2539 25 6 4.8594 4.0505 -2.1069 26 6 3.9596 5.0163 -1.3318 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9329 0.9288 0.8908 36 1 5.8735 3.8855 0.0625 37 1 6.0105 2.1832 -0.4390 38 1 6.2009 0.4367 1.1708 39 1 6.6694 -0.2168 3.4967 40 1 6.0466 -0.5749 6.1323 41 1 7.4675 -0.4468 5.0680 42 1 7.6038 -0.0173 6.7899 43 1 7.2039 2.1198 7.4654 44 1 6.7549 3.3613 6.2715 45 1 5.4725 4.6874 9.4586 46 1 5.9061 3.7951 4.7673 47 1 5.4484 4.4400 2.4367 48 1 2.8384 3.1150 -1.7758 49 1 5.8741 3.9018 -1.7375 50 1 4.7428 4.0136 -3.1900 51 1 3.2515 5.6143 -1.9053 52 1 4.3820 5.5027 -0.4525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768290911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:05 Heat of formation + Delta-G solvation = 40.335088 kcal Electronic energy + Delta-G solvation = -26651.697778 eV Core-core repulsion = 23230.078875 eV Total energy + Delta-G solvation = -3421.618903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75590 -39.66837 -37.26552 -36.41058 -34.87557 -34.13928 -31.90541 -31.56736 -29.72636 -29.17627 -27.16435 -25.86005 -24.14079 -24.00361 -23.09730 -22.92725 -22.10299 -21.18739 -20.36326 -18.64865 -18.14415 -17.46763 -16.92413 -16.81148 -16.17911 -16.08817 -15.73474 -15.31885 -15.16312 -14.82272 -14.56812 -14.43178 -14.30939 -14.04003 -13.99438 -13.76120 -13.26500 -13.15830 -13.12711 -13.05268 -12.95683 -12.68216 -12.52930 -12.44469 -12.27343 -12.14752 -11.92729 -11.84463 -11.78643 -11.66939 -11.58550 -11.39361 -11.24208 -11.10813 -10.64251 -10.38580 -9.65440 -8.95676 -8.36214 -7.80028 -6.37579 0.71084 0.83392 1.36035 1.38287 1.46364 2.33857 2.63189 2.75578 3.05795 3.09155 3.30435 3.86729 4.01786 4.03393 4.06648 4.11929 4.19023 4.22007 4.30795 4.31651 4.38520 4.42666 4.53389 4.63726 4.65882 4.71575 4.75098 4.80786 4.84323 4.85993 4.88753 4.93735 5.00542 5.02475 5.06085 5.11342 5.14113 5.16485 5.18692 5.29486 5.30786 5.33148 5.44893 5.50431 5.59005 5.66649 5.69652 5.92329 6.07256 6.16740 6.24435 6.31641 6.49908 6.82433 6.93919 7.34167 8.82832 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.003355 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.979129 B = 8344.880344 C = 8914.112997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.109 4.109 4 C 0.059 3.941 5 N -0.519 5.519 6 C 0.113 3.887 7 C -0.153 4.153 8 C -0.060 4.060 9 C -0.215 4.215 10 C 0.214 3.786 11 N -0.632 5.632 12 C 0.100 3.900 13 C 0.268 3.732 14 C -0.543 4.543 15 H 0.047 0.953 16 C 0.014 3.986 17 N -0.926 5.926 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.275 1.275 22 C -0.216 4.216 23 C -0.055 4.055 24 C 0.014 3.986 25 C -0.210 4.210 26 C -0.178 4.178 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.267 0.733 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.126 0.874 49 H 0.097 0.903 50 H 0.106 0.894 51 H 0.107 0.893 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -6.386 -23.048 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.069 4.069 5 N -0.241 5.241 6 C -0.013 4.013 7 C -0.156 4.156 8 C -0.079 4.079 9 C -0.238 4.238 10 C 0.109 3.891 11 N -0.340 5.340 12 C -0.043 4.043 13 C 0.146 3.854 14 C -0.581 4.581 15 H 0.065 0.935 16 C -0.185 4.185 17 N -0.566 5.566 18 Si 0.784 3.216 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.200 1.200 22 C -0.239 4.239 23 C -0.074 4.074 24 C -0.095 4.095 25 C -0.249 4.249 26 C -0.216 4.216 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.134 0.866 48 H 0.144 0.856 49 H 0.115 0.885 50 H 0.125 0.875 51 H 0.125 0.875 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.647 -6.084 -22.283 23.385 hybrid contribution -0.350 0.159 0.696 0.795 sum -3.997 -5.925 -21.587 22.739 Atomic orbital electron populations 1.21755 0.95410 1.01940 1.01724 1.21466 0.96277 0.96097 1.02066 1.21563 0.94269 0.97037 1.01844 1.22133 0.95701 0.88177 1.00864 1.61799 1.13655 1.16540 1.32059 1.20890 0.87586 1.01234 0.91590 1.19474 1.07177 0.93758 0.95188 1.20885 0.96344 0.95390 0.95318 1.20766 1.11575 0.99071 0.92384 1.18189 0.92666 0.93514 0.84745 1.46952 1.72800 1.10094 1.04142 1.21590 0.99420 0.81879 1.01409 1.18774 0.95204 0.86975 0.84468 1.21747 0.97031 1.21033 1.18322 0.93470 1.25753 1.01377 0.94728 0.96666 1.70022 1.35320 1.23779 1.27477 0.85593 0.79766 0.78260 0.77996 1.19290 1.20202 1.20032 1.20761 1.10083 0.95684 0.97330 1.20713 0.96186 0.99318 0.91199 1.22757 0.99860 0.95577 0.91265 1.23616 0.96632 1.05341 0.99283 1.23092 1.03523 0.92699 1.02300 0.92098 0.93645 0.92099 0.91000 0.92842 0.93427 0.91262 0.93755 0.91468 0.90166 0.92895 0.84259 0.84869 0.94328 0.89685 0.92016 0.97174 0.97228 0.92361 0.88899 0.86588 0.85638 0.88453 0.87547 0.87462 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.12 -2.08 5.93 30.59 0.18 -1.90 16 3 C -0.11 -2.16 5.20 30.59 0.16 -2.01 16 4 C 0.06 1.24 4.77 86.30 0.41 1.65 16 5 N -0.52 -11.88 4.67 -875.50 -4.09 -15.97 16 6 C 0.11 2.63 3.76 85.56 0.32 2.96 16 7 C -0.15 -4.53 4.86 -19.84 -0.10 -4.63 16 8 C -0.06 -1.71 8.21 22.25 0.18 -1.53 16 9 C -0.22 -7.14 9.21 22.40 0.21 -6.93 16 10 C 0.21 8.88 6.55 38.21 0.25 9.13 16 11 N -0.63 -28.17 2.99 -726.54 -2.17 -30.35 16 12 C 0.10 3.52 10.23 127.77 1.31 4.82 16 13 C 0.27 14.33 4.95 85.63 0.42 14.75 16 14 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 15 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 16 C 0.01 0.80 5.46 84.65 0.46 1.27 16 17 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 18 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 22 C -0.22 -9.34 9.20 22.40 0.21 -9.14 16 23 C -0.05 -1.97 9.71 22.25 0.22 -1.75 16 24 C 0.01 0.26 5.78 44.91 0.26 0.52 16 25 C -0.21 -3.30 9.51 30.62 0.29 -3.01 16 26 C -0.18 -3.18 10.01 30.62 0.31 -2.88 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.20 6.45 -2.39 -0.02 1.18 16 34 H 0.04 0.80 8.12 -2.38 -0.02 0.78 16 35 H 0.07 1.66 6.06 -2.39 -0.01 1.64 16 36 H 0.08 1.83 5.97 -2.39 -0.01 1.81 16 37 H 0.05 1.07 7.84 -2.39 -0.02 1.05 16 38 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 39 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 2.40 6.20 -2.39 -0.01 2.38 16 42 H 0.06 2.11 7.89 -2.39 -0.02 2.10 16 43 H 0.01 0.58 7.89 -2.38 -0.02 0.56 16 44 H 0.01 0.56 6.21 -2.39 -0.01 0.55 16 45 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.09 4.65 6.15 -2.91 -0.02 4.63 16 47 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 48 H 0.13 2.03 6.38 -2.39 -0.02 2.01 16 49 H 0.10 1.60 5.87 -2.39 -0.01 1.59 16 50 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 Total: -1.00 -64.31 405.00 2.97 -61.34 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.87 Total: 24.21 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 6.04 Total: -31.32 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -5.98 Total: -101.23 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.31 2.97 -61.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768290911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.673 kcal (2) G-P(sol) polarization free energy of solvation -64.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds