Wall clock time and date at job start Tue Mar 31 2020 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46980 * 2 1 4 4 C 1.52995 * 109.46943 * 119.99433 * 2 1 3 5 5 H 1.09002 * 110.36638 * 58.40089 * 4 2 1 6 6 C 1.54381 * 110.41579 * 295.92538 * 4 2 1 7 7 C 1.54257 * 105.06179 * 217.36934 * 6 4 2 8 8 C 1.54379 * 105.06186 * 359.97438 * 7 6 4 9 9 N 1.48558 * 104.59339 * 23.85486 * 8 7 6 10 10 C 1.46904 * 111.00305 * 200.96134 * 9 8 7 11 11 C 1.50698 * 109.46802 * 285.41807 * 10 9 8 12 12 C 1.38287 * 119.92666 * 89.99865 * 11 10 9 13 13 C 1.38102 * 120.07593 * 179.69794 * 12 11 10 14 14 C 1.38912 * 119.92452 * 0.27760 * 13 12 11 15 15 N 1.39671 * 120.07310 * 179.97438 * 14 13 12 16 16 C 1.46500 * 120.00223 * 0.02562 * 15 14 13 17 17 C 1.46504 * 119.99948 * 180.02562 * 15 14 13 18 18 C 1.50700 * 109.46928 * 90.00251 * 17 15 14 19 19 H 1.07993 * 119.99943 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99642 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00326 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99882 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47004 * 90.00177 * 22 20 18 24 24 H 1.48499 * 109.46997 * 210.00150 * 22 20 18 25 25 H 1.48504 * 109.47079 * 329.99902 * 22 20 18 26 26 C 1.38905 * 119.84997 * 359.97438 * 14 13 12 27 27 C 1.38106 * 119.92888 * 359.97438 * 26 14 13 28 28 H 1.08996 * 109.47399 * 300.00190 * 1 2 3 29 29 H 1.09005 * 109.46817 * 60.00411 * 1 2 3 30 30 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47399 * 239.99810 * 2 1 3 32 32 H 1.09001 * 109.47294 * 172.85254 * 3 2 1 33 33 H 1.09004 * 109.47118 * 292.84871 * 3 2 1 34 34 H 1.08997 * 109.47572 * 52.84706 * 3 2 1 35 35 H 1.09001 * 110.31776 * 336.26242 * 6 4 2 36 36 H 1.09001 * 110.32453 * 98.36960 * 6 4 2 37 37 H 1.08997 * 110.32809 * 118.89190 * 7 6 4 38 38 H 1.08996 * 110.32619 * 241.10185 * 7 6 4 39 39 H 1.08999 * 110.41313 * 265.07642 * 8 7 6 40 40 H 1.08996 * 110.41283 * 142.63005 * 8 7 6 41 41 H 1.08999 * 109.47624 * 165.41526 * 10 9 8 42 42 H 1.09002 * 109.46784 * 45.41578 * 10 9 8 43 43 H 1.08002 * 119.96169 * 359.97438 * 12 11 10 44 44 H 1.08006 * 120.03600 * 180.25039 * 13 12 11 45 45 H 1.09001 * 109.47038 * 89.99528 * 16 15 14 46 46 H 1.08997 * 109.47503 * 209.99840 * 16 15 14 47 47 H 1.08998 * 109.47339 * 330.00155 * 16 15 14 48 48 H 1.08999 * 109.47147 * 210.00184 * 17 15 14 49 49 H 1.08992 * 109.46918 * 330.00161 * 17 15 14 50 50 H 0.96999 * 120.00088 * 180.02562 * 21 20 18 51 51 H 1.08004 * 120.03544 * 179.97438 * 26 14 13 52 52 H 1.07997 * 119.96267 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6616 -1.7429 1.2785 6 6 1.6231 0.0466 2.5221 7 6 2.8215 -0.0907 3.4837 8 6 3.8614 -0.9304 2.7112 9 7 3.5251 -0.7184 1.2798 10 6 4.0709 -1.7972 0.4453 11 6 5.5601 -1.6163 0.3013 12 6 6.4176 -2.2019 1.2146 13 6 7.7831 -2.0433 1.0820 14 6 8.2946 -1.2897 0.0331 15 7 9.6751 -1.1268 -0.1036 16 6 10.5853 -1.7515 0.8594 17 6 10.2128 -0.3312 -1.2100 18 6 10.3399 1.1072 -0.7790 19 1 10.0489 1.3996 0.2190 20 6 10.8268 2.0501 -1.6593 21 7 11.1798 1.6943 -2.8752 22 14 10.9837 3.8333 -1.1254 23 1 12.3267 4.0559 -0.5318 24 1 10.8102 4.7199 -2.3039 25 1 9.9390 4.1415 -0.1160 26 6 7.4302 -0.6985 -0.8794 27 6 6.0658 -0.8620 -0.7416 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1225 1.4452 0.1279 33 1 1.7849 1.9181 -0.9471 34 1 1.5760 1.9920 0.8190 35 1 1.4430 1.0961 2.2892 36 1 0.7312 -0.4019 2.9598 37 1 3.2296 0.8913 3.7227 38 1 2.5190 -0.6077 4.3943 39 1 3.7679 -1.9847 2.9716 40 1 4.8698 -0.5740 2.9215 41 1 3.6043 -1.7665 -0.5393 42 1 3.8655 -2.7591 0.9149 43 1 6.0193 -2.7876 2.0298 44 1 8.4525 -2.5043 1.7933 45 1 10.8524 -2.7496 0.5122 46 1 11.4868 -1.1460 0.9530 47 1 10.0940 -1.8239 1.8297 48 1 11.1939 -0.7147 -1.4900 49 1 9.5397 -0.3963 -2.0649 50 1 11.5226 2.3576 -3.4943 51 1 7.8246 -0.1116 -1.6957 52 1 5.3932 -0.4029 -1.4510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768318403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:46 Heat of formation + Delta-G solvation = 25.554478 kcal Electronic energy + Delta-G solvation = -26968.339190 eV Core-core repulsion = 23546.079352 eV Total energy + Delta-G solvation = -3422.259838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78951 -38.69060 -35.90019 -34.64795 -32.87318 -32.23641 -30.40414 -29.23648 -27.86968 -27.73570 -27.15445 -25.79030 -24.18880 -22.64951 -22.14534 -21.65390 -20.66538 -19.51298 -18.89478 -16.66484 -16.46479 -16.11783 -15.77648 -15.22198 -14.86629 -14.50672 -14.30264 -14.18815 -13.74496 -13.67544 -13.46031 -13.07237 -12.94387 -12.82565 -12.51402 -12.47335 -12.17895 -12.09198 -11.78273 -11.65634 -11.40084 -11.28749 -11.23520 -11.18974 -11.06337 -10.95609 -10.87537 -10.66131 -10.56786 -10.42229 -10.30077 -10.21673 -9.86172 -9.71524 -8.80402 -8.48794 -8.34138 -8.20946 -6.43037 -5.99181 -4.15347 2.16155 2.27012 3.27790 3.34654 3.39852 4.00496 4.18670 4.43434 4.48707 4.60169 4.70808 4.90070 5.00268 5.04947 5.14976 5.23503 5.27746 5.32453 5.35285 5.47089 5.51751 5.58867 5.61315 5.62738 5.69832 5.77313 5.81920 5.85381 5.86287 5.91307 5.96483 6.04638 6.08302 6.12646 6.13036 6.13384 6.30432 6.33270 6.42931 6.48140 6.53121 6.68312 6.89625 7.02190 7.06546 7.16002 7.25135 7.31095 7.42212 7.65285 7.83221 8.17826 8.29900 8.52402 8.93880 9.51513 10.97545 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.003245 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.288278 B = 8625.277816 C = 9578.757251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.142 4.142 4 C 0.065 3.935 5 H 0.046 0.954 6 C -0.122 4.122 7 C -0.125 4.125 8 C 0.037 3.963 9 N -0.495 5.495 10 C 0.101 3.899 11 C -0.162 4.162 12 C -0.067 4.067 13 C -0.222 4.222 14 C 0.241 3.759 15 N -0.617 5.617 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.188 4.188 27 C -0.052 4.052 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.131 0.869 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.282 -6.854 9.006 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.199 4.199 4 C -0.044 4.044 5 H 0.064 0.936 6 C -0.160 4.160 7 C -0.163 4.163 8 C -0.091 4.091 9 N -0.219 5.219 10 C -0.027 4.027 11 C -0.165 4.165 12 C -0.086 4.086 13 C -0.245 4.245 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.045 4.045 17 C 0.130 3.870 18 C -0.569 4.569 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.210 4.210 27 C -0.071 4.071 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.148 0.852 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.722 -6.261 8.582 20.662 hybrid contribution -0.016 0.245 0.552 0.604 sum -17.738 -6.016 9.134 20.839 Atomic orbital electron populations 1.21853 0.95536 1.01308 1.01746 1.20975 0.94583 0.97303 0.97097 1.21802 1.03149 0.94646 1.00333 1.22668 0.88944 0.97435 0.95306 0.93625 1.22423 0.97401 1.01550 0.94651 1.22291 0.95629 1.00719 0.97685 1.23078 1.00025 0.97714 0.88295 1.65370 1.06681 1.43424 1.06418 1.20980 0.92756 0.91417 0.97502 1.19087 0.93262 1.05147 0.99041 1.20475 0.92615 0.98346 0.97208 1.20507 0.95210 1.07731 1.01074 1.17934 0.84350 0.91701 0.92617 1.47086 1.01528 1.53480 1.30151 1.21457 0.94286 0.96603 0.92171 1.19273 0.94307 0.89397 0.84059 1.21583 1.42879 0.93010 0.99454 0.92268 1.24957 0.95202 0.99117 0.94779 1.69929 1.43547 1.34545 1.05433 0.86532 0.78474 0.84444 0.78256 1.20658 1.21073 1.19749 1.20879 0.92579 1.05424 1.02154 1.20606 0.94264 0.95732 0.96531 0.92654 0.92668 0.93145 0.91360 0.90590 0.93658 0.93166 0.90370 0.92009 0.91141 0.91886 0.94375 0.89830 0.90846 0.94895 0.87953 0.87074 0.94701 0.91507 0.92753 0.95279 0.94629 0.92670 0.85165 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.01 37.16 0.33 -0.84 16 2 C -0.08 -0.79 2.84 -90.62 -0.26 -1.05 16 3 C -0.14 -1.52 8.66 37.16 0.32 -1.20 16 4 C 0.06 0.66 2.06 -66.08 -0.14 0.53 16 5 H 0.05 0.47 7.99 -51.93 -0.42 0.05 16 6 C -0.12 -1.13 5.39 -25.35 -0.14 -1.26 16 7 C -0.13 -1.22 7.00 -25.35 -0.18 -1.40 16 8 C 0.04 0.43 5.70 -2.18 -0.01 0.41 16 9 N -0.50 -6.09 4.15 -223.59 -0.93 -7.02 16 10 C 0.10 1.30 4.92 -4.97 -0.02 1.28 16 11 C -0.16 -2.55 5.20 -104.59 -0.54 -3.09 16 12 C -0.07 -1.06 8.92 -39.61 -0.35 -1.41 16 13 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16 14 C 0.24 4.95 6.55 -83.79 -0.55 4.40 16 15 N -0.62 -13.39 2.99 -181.01 -0.54 -13.93 16 16 C 0.10 1.76 10.19 59.85 0.61 2.37 16 17 C 0.25 6.32 4.91 -5.19 -0.03 6.30 16 18 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.83 13.29 55.43 0.74 -25.10 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.19 -3.87 9.21 -39.38 -0.36 -4.23 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 28 H 0.05 0.42 7.37 -51.93 -0.38 0.04 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 32 H 0.08 0.99 7.42 -51.93 -0.39 0.61 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.50 6.25 -51.93 -0.32 0.17 16 35 H 0.08 0.73 5.61 -51.93 -0.29 0.44 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.42 7.75 -51.93 -0.40 0.01 16 40 H 0.08 1.10 7.89 -51.93 -0.41 0.69 16 41 H 0.07 0.91 7.11 -51.93 -0.37 0.54 16 42 H 0.03 0.40 7.71 -51.93 -0.40 0.00 16 43 H 0.10 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.11 1.78 6.14 -52.48 -0.32 1.46 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 48 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 50 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 51 H 0.13 2.96 6.14 -52.48 -0.32 2.64 16 52 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -28.63 398.03 -11.47 -40.10 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -9.24 Total: 1.58 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.48 Total: -18.12 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.73 Total: -46.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.63 -11.47 -40.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768318403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.654 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds