Wall clock time and date at job start Tue Mar 31 2020 11:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46980 * 2 1 4 4 C 1.52995 * 109.46943 * 119.99433 * 2 1 3 5 5 H 1.09002 * 110.36638 * 58.40089 * 4 2 1 6 6 C 1.54381 * 110.41579 * 295.92538 * 4 2 1 7 7 C 1.54257 * 105.06179 * 217.36934 * 6 4 2 8 8 C 1.54379 * 105.06186 * 359.97438 * 7 6 4 9 9 N 1.48558 * 104.59339 * 23.85486 * 8 7 6 10 10 C 1.46904 * 111.00305 * 200.96134 * 9 8 7 11 11 C 1.50698 * 109.46802 * 285.41807 * 10 9 8 12 12 C 1.38287 * 119.92666 * 89.99865 * 11 10 9 13 13 C 1.38102 * 120.07593 * 179.69794 * 12 11 10 14 14 C 1.38912 * 119.92452 * 0.27760 * 13 12 11 15 15 N 1.39671 * 120.07310 * 179.97438 * 14 13 12 16 16 C 1.46500 * 120.00223 * 0.02562 * 15 14 13 17 17 C 1.46504 * 119.99948 * 180.02562 * 15 14 13 18 18 C 1.50700 * 109.46928 * 90.00251 * 17 15 14 19 19 H 1.07993 * 119.99943 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99642 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00326 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99882 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47004 * 90.00177 * 22 20 18 24 24 H 1.48499 * 109.46997 * 210.00150 * 22 20 18 25 25 H 1.48504 * 109.47079 * 329.99902 * 22 20 18 26 26 C 1.38905 * 119.84997 * 359.97438 * 14 13 12 27 27 C 1.38106 * 119.92888 * 359.97438 * 26 14 13 28 28 H 1.08996 * 109.47399 * 300.00190 * 1 2 3 29 29 H 1.09005 * 109.46817 * 60.00411 * 1 2 3 30 30 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47399 * 239.99810 * 2 1 3 32 32 H 1.09001 * 109.47294 * 172.85254 * 3 2 1 33 33 H 1.09004 * 109.47118 * 292.84871 * 3 2 1 34 34 H 1.08997 * 109.47572 * 52.84706 * 3 2 1 35 35 H 1.09001 * 110.31776 * 336.26242 * 6 4 2 36 36 H 1.09001 * 110.32453 * 98.36960 * 6 4 2 37 37 H 1.08997 * 110.32809 * 118.89190 * 7 6 4 38 38 H 1.08996 * 110.32619 * 241.10185 * 7 6 4 39 39 H 1.08999 * 110.41313 * 265.07642 * 8 7 6 40 40 H 1.08996 * 110.41283 * 142.63005 * 8 7 6 41 41 H 1.08999 * 109.47624 * 165.41526 * 10 9 8 42 42 H 1.09002 * 109.46784 * 45.41578 * 10 9 8 43 43 H 1.08002 * 119.96169 * 359.97438 * 12 11 10 44 44 H 1.08006 * 120.03600 * 180.25039 * 13 12 11 45 45 H 1.09001 * 109.47038 * 89.99528 * 16 15 14 46 46 H 1.08997 * 109.47503 * 209.99840 * 16 15 14 47 47 H 1.08998 * 109.47339 * 330.00155 * 16 15 14 48 48 H 1.08999 * 109.47147 * 210.00184 * 17 15 14 49 49 H 1.08992 * 109.46918 * 330.00161 * 17 15 14 50 50 H 0.96999 * 120.00088 * 180.02562 * 21 20 18 51 51 H 1.08004 * 120.03544 * 179.97438 * 26 14 13 52 52 H 1.07997 * 119.96267 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6616 -1.7429 1.2785 6 6 1.6231 0.0466 2.5221 7 6 2.8215 -0.0907 3.4837 8 6 3.8614 -0.9304 2.7112 9 7 3.5251 -0.7184 1.2798 10 6 4.0709 -1.7972 0.4453 11 6 5.5601 -1.6163 0.3013 12 6 6.4176 -2.2019 1.2146 13 6 7.7831 -2.0433 1.0820 14 6 8.2946 -1.2897 0.0331 15 7 9.6751 -1.1268 -0.1036 16 6 10.5853 -1.7515 0.8594 17 6 10.2128 -0.3312 -1.2100 18 6 10.3399 1.1072 -0.7790 19 1 10.0489 1.3996 0.2190 20 6 10.8268 2.0501 -1.6593 21 7 11.1798 1.6943 -2.8752 22 14 10.9837 3.8333 -1.1254 23 1 12.3267 4.0559 -0.5318 24 1 10.8102 4.7199 -2.3039 25 1 9.9390 4.1415 -0.1160 26 6 7.4302 -0.6985 -0.8794 27 6 6.0658 -0.8620 -0.7416 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1225 1.4452 0.1279 33 1 1.7849 1.9181 -0.9471 34 1 1.5760 1.9920 0.8190 35 1 1.4430 1.0961 2.2892 36 1 0.7312 -0.4019 2.9598 37 1 3.2296 0.8913 3.7227 38 1 2.5190 -0.6077 4.3943 39 1 3.7679 -1.9847 2.9716 40 1 4.8698 -0.5740 2.9215 41 1 3.6043 -1.7665 -0.5393 42 1 3.8655 -2.7591 0.9149 43 1 6.0193 -2.7876 2.0298 44 1 8.4525 -2.5043 1.7933 45 1 10.8524 -2.7496 0.5122 46 1 11.4868 -1.1460 0.9530 47 1 10.0940 -1.8239 1.8297 48 1 11.1939 -0.7147 -1.4900 49 1 9.5397 -0.3963 -2.0649 50 1 11.5226 2.3576 -3.4943 51 1 7.8246 -0.1116 -1.6957 52 1 5.3932 -0.4029 -1.4510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768318403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:45 Heat of formation + Delta-G solvation = 12.301744 kcal Electronic energy + Delta-G solvation = -26968.913872 eV Core-core repulsion = 23546.079352 eV Total energy + Delta-G solvation = -3422.834520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82275 -39.98333 -37.38692 -35.56341 -34.79159 -33.40366 -31.88586 -30.54646 -29.58851 -28.63012 -27.91077 -27.17667 -25.80256 -23.91745 -23.24740 -23.06472 -21.70191 -20.93662 -19.68830 -18.63961 -18.10377 -17.08792 -16.81989 -16.67339 -16.28267 -15.91352 -15.37232 -15.29736 -15.23810 -14.94302 -14.62168 -14.31461 -14.19119 -13.98491 -13.89902 -13.55036 -13.46610 -13.18286 -13.07137 -12.90677 -12.82178 -12.67849 -12.58252 -12.54725 -12.26218 -12.18727 -12.05327 -11.89555 -11.78315 -11.75006 -11.55434 -11.37949 -11.19576 -11.06873 -10.64559 -10.38735 -9.65353 -9.24710 -8.36255 -7.79019 -6.37860 0.72142 0.85869 1.35649 1.37279 1.48392 2.33963 2.63906 2.96539 3.05656 3.36908 3.74701 3.80922 4.03563 4.12874 4.16945 4.22291 4.23788 4.36321 4.38389 4.44447 4.47556 4.55064 4.64225 4.66838 4.72057 4.73837 4.81129 4.85993 4.89500 4.90403 4.95642 5.00868 5.05393 5.10445 5.12913 5.13852 5.20046 5.20907 5.31011 5.32057 5.36184 5.36714 5.56936 5.59676 5.64026 5.68094 5.70188 5.93112 6.07020 6.14185 6.19086 6.27765 6.50456 6.82720 6.94584 7.34027 8.82859 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.003245 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.288278 B = 8625.277816 C = 9578.757251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.138 4.138 4 C 0.067 3.933 5 H 0.054 0.946 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.035 3.965 9 N -0.514 5.514 10 C 0.105 3.895 11 C -0.149 4.149 12 C -0.060 4.060 13 C -0.216 4.216 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.099 3.901 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.048 0.952 20 C 0.013 3.987 21 N -0.926 5.926 22 Si 0.961 3.039 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.274 1.274 26 C -0.216 4.216 27 C -0.057 4.057 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.093 0.907 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.714 -7.551 11.347 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.195 4.195 4 C -0.041 4.041 5 H 0.072 0.928 6 C -0.156 4.156 7 C -0.160 4.160 8 C -0.093 4.093 9 N -0.238 5.238 10 C -0.022 4.022 11 C -0.151 4.151 12 C -0.079 4.079 13 C -0.239 4.239 14 C 0.108 3.892 15 N -0.341 5.341 16 C -0.044 4.044 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.066 0.934 20 C -0.186 4.186 21 N -0.566 5.566 22 Si 0.786 3.214 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.198 1.198 26 C -0.239 4.239 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.177 -6.978 10.945 23.992 hybrid contribution 0.622 0.414 -0.163 0.765 sum -19.555 -6.564 10.782 23.275 Atomic orbital electron populations 1.21801 0.93825 1.02040 1.02246 1.20970 0.95950 0.96269 0.96684 1.21745 1.01316 0.95764 1.00720 1.22708 0.87424 0.98073 0.95899 0.92778 1.22419 0.97852 1.01404 0.93966 1.22278 0.95270 1.00180 0.98313 1.23081 0.99495 0.98658 0.88080 1.65303 1.08320 1.43268 1.06871 1.20927 0.90468 0.92511 0.98302 1.19439 0.95288 1.02935 0.97472 1.20849 0.91761 0.97665 0.97629 1.20763 0.96473 1.06578 1.00102 1.18187 0.83735 0.93307 0.93995 1.46956 1.02640 1.54259 1.30255 1.21591 0.93490 0.96870 0.92477 1.18753 0.92645 0.89166 0.84859 1.21772 1.42850 0.94432 0.98969 0.93409 1.25774 0.94760 1.03352 0.94755 1.70034 1.44169 1.36006 1.06399 0.85514 0.78707 0.79290 0.77937 1.19433 1.20308 1.19836 1.20760 0.94208 1.06783 1.02154 1.20732 0.93075 0.96182 0.97590 0.91903 0.92477 0.92279 0.92342 0.93369 0.93593 0.92340 0.90689 0.90083 0.92031 0.90061 0.93157 0.91900 0.90503 0.93150 0.84524 0.85005 0.92930 0.92550 0.90399 0.97276 0.97218 0.92369 0.88889 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.01 71.98 0.65 -1.25 16 2 C -0.08 -1.42 2.84 -10.79 -0.03 -1.45 16 3 C -0.14 -2.84 8.66 71.98 0.62 -2.22 16 4 C 0.07 1.19 2.06 45.07 0.09 1.28 16 5 H 0.05 0.90 7.99 -2.39 -0.02 0.88 16 6 C -0.12 -1.82 5.39 31.49 0.17 -1.65 16 7 C -0.12 -2.05 7.00 31.49 0.22 -1.83 16 8 C 0.03 0.71 5.70 86.45 0.49 1.21 16 9 N -0.51 -11.58 4.15 -861.30 -3.58 -15.16 16 10 C 0.11 2.47 4.92 85.56 0.42 2.89 16 11 C -0.15 -4.46 5.20 -19.84 -0.10 -4.56 16 12 C -0.06 -1.74 8.92 22.25 0.20 -1.54 16 13 C -0.22 -7.33 9.21 22.40 0.21 -7.12 16 14 C 0.21 8.93 6.55 38.21 0.25 9.19 16 15 N -0.63 -28.49 2.99 -726.58 -2.17 -30.67 16 16 C 0.10 3.51 10.19 127.77 1.30 4.81 16 17 C 0.27 14.41 4.91 85.63 0.42 14.83 16 18 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 19 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.01 0.73 5.46 84.65 0.46 1.20 16 21 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 22 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 26 C -0.22 -9.43 9.21 22.40 0.21 -9.22 16 27 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 28 H 0.06 0.76 7.37 -2.39 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 1.15 7.29 -2.39 -0.02 1.13 16 32 H 0.05 1.26 7.42 -2.39 -0.02 1.24 16 33 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 1.08 6.25 -2.39 -0.01 1.07 16 35 H 0.07 1.21 5.61 -2.39 -0.01 1.20 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 0.91 7.75 -2.39 -0.02 0.89 16 40 H 0.06 1.55 7.89 -2.39 -0.02 1.53 16 41 H 0.08 1.76 7.11 -2.39 -0.02 1.74 16 42 H 0.05 1.03 7.71 -2.39 -0.02 1.01 16 43 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 44 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 47 H 0.08 2.35 6.20 -2.39 -0.01 2.34 16 48 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 49 H 0.01 0.57 6.20 -2.39 -0.01 0.56 16 50 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 51 H 0.09 4.67 6.14 -2.91 -0.02 4.65 16 52 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -64.35 398.03 3.47 -60.89 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.87 Total: 21.10 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 6.04 Total: -28.20 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -5.47 Total: -100.80 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.35 3.47 -60.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768318403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.188 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds