Wall clock time and date at job start Tue Mar 31 2020 11:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 N 1.46898 * 109.47138 * 120.00268 * 2 1 3 5 5 C 1.46899 * 111.00089 * 166.13792 * 4 2 1 6 6 C 1.50698 * 109.47055 * 293.95174 * 5 4 2 7 7 H 1.07998 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99706 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00265 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99787 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46959 * 90.00139 * 10 8 6 12 12 H 1.48501 * 109.46846 * 209.99701 * 10 8 6 13 13 H 1.48497 * 109.47193 * 329.99727 * 10 8 6 14 14 C 1.46908 * 110.99535 * 290.09309 * 4 2 1 15 15 C 1.50701 * 109.46956 * 163.94002 * 14 4 2 16 16 C 1.38288 * 119.92209 * 274.95866 * 15 14 4 17 17 C 1.38106 * 120.07017 * 179.72707 * 16 15 14 18 18 C 1.38911 * 119.92547 * 0.54300 * 17 16 15 19 19 N 1.39677 * 120.07617 * 179.71039 * 18 17 16 20 20 C 1.46839 * 111.00347 * 124.22798 * 19 18 17 21 21 C 1.53040 * 109.52599 * 174.16165 * 20 19 18 22 22 C 1.53117 * 109.27898 * 59.17728 * 21 20 19 23 23 C 1.53121 * 109.16084 * 302.34822 * 22 21 20 24 24 C 1.46851 * 110.99617 * 0.02562 * 19 18 17 25 25 C 1.38911 * 119.85329 * 359.72474 * 18 17 16 26 26 C 1.38111 * 119.92322 * 0.02562 * 25 18 17 27 27 H 1.08996 * 109.47000 * 297.91997 * 1 2 3 28 28 H 1.09007 * 109.47040 * 57.91757 * 1 2 3 29 29 H 1.09000 * 109.46943 * 177.91486 * 1 2 3 30 30 H 1.09000 * 109.46879 * 240.00216 * 2 1 3 31 31 H 1.08997 * 109.46930 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47148 * 299.99872 * 3 2 1 33 33 H 1.08993 * 109.47356 * 60.00120 * 3 2 1 34 34 H 1.09003 * 109.46956 * 53.95421 * 5 4 2 35 35 H 1.09003 * 109.46774 * 173.94634 * 5 4 2 36 36 H 0.96992 * 120.00157 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46878 * 283.93392 * 14 4 2 38 38 H 1.08999 * 109.47415 * 43.93891 * 14 4 2 39 39 H 1.08000 * 119.96399 * 359.97438 * 16 15 14 40 40 H 1.08005 * 120.03783 * 180.26872 * 17 16 15 41 41 H 1.09004 * 109.46503 * 294.17450 * 20 19 18 42 42 H 1.09001 * 109.46340 * 54.14208 * 20 19 18 43 43 H 1.09004 * 109.50047 * 299.23794 * 21 20 19 44 44 H 1.08998 * 109.50598 * 179.12298 * 21 20 19 45 45 H 1.09000 * 109.52469 * 182.44594 * 22 21 20 46 46 H 1.09001 * 109.52217 * 62.24929 * 22 21 20 47 47 H 1.08993 * 109.50908 * 297.71433 * 23 22 21 48 48 H 1.08998 * 109.50308 * 177.59061 * 23 22 21 49 49 H 1.09002 * 109.46400 * 305.85655 * 24 19 18 50 50 H 1.08993 * 109.46286 * 65.82775 * 24 19 18 51 51 H 1.08001 * 120.04026 * 180.02562 * 25 18 17 52 52 H 1.07993 * 119.96349 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4505 -1.0033 1.0806 6 6 3.6562 -2.0088 -0.0230 7 1 2.8089 -2.3795 -0.5806 8 6 4.9262 -2.4554 -0.3207 9 7 5.9582 -2.0036 0.3580 10 14 5.1812 -3.7011 -1.6891 11 1 5.3997 -2.9880 -2.9732 12 1 6.3675 -4.5394 -1.3805 13 1 3.9795 -4.5661 -1.8014 14 6 1.7509 0.0962 2.4093 15 6 1.8944 -0.7834 3.6245 16 6 0.8265 -1.5525 4.0493 17 6 0.9563 -2.3639 5.1592 18 6 2.1577 -2.3984 5.8558 19 7 2.2905 -3.2134 6.9823 20 6 3.4257 -4.1331 6.8356 21 6 3.6300 -4.9058 8.1408 22 6 2.3552 -5.6872 8.4705 23 6 1.1793 -4.7115 8.5702 24 6 1.0461 -3.9448 7.2523 25 6 3.2266 -1.6203 5.4296 26 6 3.0916 -0.8150 4.3158 27 1 -0.3633 0.4812 0.9080 28 1 -0.3633 0.5459 -0.8708 29 1 -0.3633 -1.0270 -0.0374 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 4.0023 -0.0921 0.8495 35 1 3.8116 -1.4178 2.0218 36 1 6.8516 -2.3175 0.1483 37 1 2.4619 0.9201 2.4712 38 1 0.7369 0.4937 2.3661 39 1 -0.1088 -1.5216 3.5101 40 1 0.1233 -2.9677 5.4880 41 1 3.2226 -4.8346 6.0264 42 1 4.3266 -3.5644 6.6054 43 1 3.8469 -4.2059 8.9478 44 1 4.4629 -5.5996 8.0265 45 1 2.4808 -6.2045 9.4217 46 1 2.1595 -6.4142 7.6823 47 1 1.3575 -4.0086 9.3838 48 1 0.2612 -5.2667 8.7625 49 1 0.2185 -3.2391 7.3249 50 1 0.8543 -4.6470 6.4412 51 1 4.1622 -1.6451 5.9686 52 1 3.9221 -0.2095 3.9841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768766008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:08 Heat of formation + Delta-G solvation = 24.471261 kcal Electronic energy + Delta-G solvation = -27226.077720 eV Core-core repulsion = 23803.770910 eV Total energy + Delta-G solvation = -3422.306810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18535 -38.39596 -37.02229 -33.87231 -32.75353 -31.50410 -31.15160 -30.17943 -29.26414 -26.84373 -26.59066 -24.93045 -23.88217 -23.41651 -22.07971 -21.36580 -20.71324 -19.67186 -18.64576 -17.30641 -16.18963 -15.69660 -15.36933 -14.99447 -14.81995 -14.51089 -14.34558 -14.10827 -13.98424 -13.81628 -13.46339 -13.17376 -13.06695 -12.92815 -12.75872 -12.36585 -12.20770 -12.02952 -11.88216 -11.46360 -11.36980 -11.30873 -11.05274 -10.92039 -10.82987 -10.72645 -10.67574 -10.57549 -10.55415 -10.39762 -10.28966 -9.98028 -9.73608 -9.26765 -9.08881 -8.47913 -8.36166 -7.44843 -7.11247 -5.98446 -3.98187 1.78855 1.88062 3.32834 3.39255 3.43726 3.75897 4.22027 4.46954 4.63440 4.68877 4.79243 5.04998 5.09296 5.22096 5.25645 5.29499 5.37325 5.41128 5.47865 5.51531 5.55194 5.59045 5.67183 5.72011 5.74800 5.80955 5.83443 5.89721 5.93877 5.96622 6.01791 6.06056 6.09125 6.12903 6.18982 6.24297 6.30274 6.37372 6.47640 6.55045 6.60416 6.76871 6.82765 6.91960 7.10846 7.19548 7.23840 7.42150 7.46760 7.62633 7.85934 8.18361 8.30719 8.62584 9.09164 9.65058 11.12356 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003765 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.125927 B = 7434.636930 C = 8953.274529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 C -0.181 4.181 4 N -0.524 5.524 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.892 3.108 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.091 3.909 15 C -0.080 4.080 16 C -0.075 4.075 17 C -0.175 4.175 18 C 0.098 3.902 19 N -0.488 5.488 20 C 0.056 3.944 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.117 4.117 24 C 0.051 3.949 25 C -0.138 4.138 26 C -0.078 4.078 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.047 0.953 34 H -0.008 1.008 35 H 0.037 0.963 36 H 0.259 0.741 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.043 0.957 51 H 0.118 0.882 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 -1.094 13.800 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.240 4.240 4 N -0.248 5.248 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.037 4.037 15 C -0.082 4.082 16 C -0.094 4.094 17 C -0.195 4.195 18 C 0.001 3.999 19 N -0.204 5.204 20 C -0.070 4.070 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.076 4.076 25 C -0.158 4.158 26 C -0.097 4.097 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.009 0.991 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.062 0.938 51 H 0.136 0.864 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.327 -1.321 14.307 17.130 hybrid contribution 0.678 -0.396 -1.471 1.667 sum -8.649 -1.717 12.836 15.573 Atomic orbital electron populations 1.21855 0.96231 1.01513 1.00147 1.21606 0.93734 0.91918 0.95660 1.22446 1.02247 0.98679 1.00580 1.62348 1.21631 1.41584 0.99236 1.19793 0.80748 0.95103 0.97898 1.21167 0.92441 1.23805 1.16746 0.92082 1.24944 0.96059 0.96776 0.96695 1.69953 0.98768 1.44265 1.40824 0.86583 0.77669 0.81473 0.82220 1.20810 1.21344 1.19857 1.20994 1.00032 0.93285 0.89364 1.19758 0.93471 0.98828 0.96113 1.20753 0.98551 0.95133 0.95008 1.21138 0.97849 1.03159 0.97372 1.18789 0.94794 0.96523 0.89759 1.59111 1.05338 1.21405 1.34558 1.22239 0.93466 0.94163 0.97108 1.21623 0.97598 0.98749 0.97605 1.21604 0.95151 0.97805 1.01516 1.21615 0.98324 0.98023 0.97561 1.22236 0.91795 0.96468 0.97110 1.20651 0.97989 0.98786 0.98414 1.20957 0.96837 0.97981 0.93970 0.93518 0.93440 0.92412 0.88945 0.92142 0.93346 0.93441 0.99075 0.94538 0.93089 0.94962 0.91329 0.86462 0.86343 0.93870 0.89911 0.91081 0.91259 0.91813 0.92122 0.91111 0.91428 0.90143 0.93834 0.86388 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.26 37.16 0.34 -1.82 16 2 C 0.08 1.51 2.76 -67.71 -0.19 1.32 16 3 C -0.18 -3.12 8.44 37.16 0.31 -2.80 16 4 N -0.52 -11.08 4.36 -229.51 -1.00 -12.08 16 5 C 0.19 4.85 4.46 -4.98 -0.02 4.83 16 6 C -0.50 -14.08 8.31 -34.44 -0.29 -14.37 16 7 H 0.06 1.71 7.23 -52.49 -0.38 1.33 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.09 1.65 3.70 -4.97 -0.02 1.63 16 15 C -0.08 -1.45 4.94 -104.59 -0.52 -1.96 16 16 C -0.08 -1.24 9.71 -39.61 -0.38 -1.62 16 17 C -0.17 -2.66 8.82 -39.38 -0.35 -3.01 16 18 C 0.10 1.53 5.64 -83.79 -0.47 1.05 16 19 N -0.49 -6.50 4.70 -171.14 -0.80 -7.30 16 20 C 0.06 0.70 5.26 -3.84 -0.02 0.68 16 21 C -0.12 -1.16 6.09 -26.65 -0.16 -1.32 16 22 C -0.12 -1.09 6.00 -26.61 -0.16 -1.25 16 23 C -0.12 -1.06 6.09 -26.64 -0.16 -1.22 16 24 C 0.05 0.57 4.15 -3.83 -0.02 0.55 16 25 C -0.14 -2.29 9.16 -39.38 -0.36 -2.66 16 26 C -0.08 -1.41 8.25 -39.61 -0.33 -1.74 16 27 H 0.05 0.67 6.38 -51.93 -0.33 0.34 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.98 6.60 -51.93 -0.34 1.64 16 31 H 0.06 1.18 6.74 -51.93 -0.35 0.83 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.75 6.64 -51.93 -0.34 0.40 16 34 H -0.01 -0.23 6.61 -51.93 -0.34 -0.57 16 35 H 0.04 1.01 6.12 -51.93 -0.32 0.69 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 38 H 0.07 1.11 6.07 -51.93 -0.32 0.79 16 39 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.12 1.54 5.81 -52.48 -0.30 1.24 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.07 6.70 -51.93 -0.35 0.72 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.86 6.98 -51.93 -0.36 0.50 16 50 H 0.04 0.51 7.74 -51.93 -0.40 0.10 16 51 H 0.12 1.80 7.15 -52.49 -0.38 1.42 16 52 H 0.12 2.21 8.01 -52.49 -0.42 1.79 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -29.87 389.35 -12.20 -42.07 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -9.09 Total: 2.74 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.88 Total: -22.21 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -1.07 Total: -45.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.87 -12.20 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768766008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.541 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds