Wall clock time and date at job start Tue Mar 31 2020 11:22:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47035 * 2 1
4 4 N 1.46898 * 109.47138 * 120.00268 * 2 1 3
5 5 C 1.46899 * 111.00089 * 166.13792 * 4 2 1
6 6 C 1.50698 * 109.47055 * 293.95174 * 5 4 2
7 7 H 1.07998 * 120.00140 * 0.02562 * 6 5 4
8 8 C 1.37875 * 119.99706 * 180.02562 * 6 5 4
9 9 N 1.31519 * 120.00265 * 359.97438 * 8 6 5
10 10 Si 1.86802 * 119.99787 * 180.02562 * 8 6 5
11 11 H 1.48497 * 109.46959 * 90.00139 * 10 8 6
12 12 H 1.48501 * 109.46846 * 209.99701 * 10 8 6
13 13 H 1.48497 * 109.47193 * 329.99727 * 10 8 6
14 14 C 1.46908 * 110.99535 * 290.09309 * 4 2 1
15 15 C 1.50701 * 109.46956 * 163.94002 * 14 4 2
16 16 C 1.38288 * 119.92209 * 274.95866 * 15 14 4
17 17 C 1.38106 * 120.07017 * 179.72707 * 16 15 14
18 18 C 1.38911 * 119.92547 * 0.54300 * 17 16 15
19 19 N 1.39677 * 120.07617 * 179.71039 * 18 17 16
20 20 C 1.46839 * 111.00347 * 124.22798 * 19 18 17
21 21 C 1.53040 * 109.52599 * 174.16165 * 20 19 18
22 22 C 1.53117 * 109.27898 * 59.17728 * 21 20 19
23 23 C 1.53121 * 109.16084 * 302.34822 * 22 21 20
24 24 C 1.46851 * 110.99617 * 0.02562 * 19 18 17
25 25 C 1.38911 * 119.85329 * 359.72474 * 18 17 16
26 26 C 1.38111 * 119.92322 * 0.02562 * 25 18 17
27 27 H 1.08996 * 109.47000 * 297.91997 * 1 2 3
28 28 H 1.09007 * 109.47040 * 57.91757 * 1 2 3
29 29 H 1.09000 * 109.46943 * 177.91486 * 1 2 3
30 30 H 1.09000 * 109.46879 * 240.00216 * 2 1 3
31 31 H 1.08997 * 109.46930 * 180.02562 * 3 2 1
32 32 H 1.09002 * 109.47148 * 299.99872 * 3 2 1
33 33 H 1.08993 * 109.47356 * 60.00120 * 3 2 1
34 34 H 1.09003 * 109.46956 * 53.95421 * 5 4 2
35 35 H 1.09003 * 109.46774 * 173.94634 * 5 4 2
36 36 H 0.96992 * 120.00157 * 180.02562 * 9 8 6
37 37 H 1.08996 * 109.46878 * 283.93392 * 14 4 2
38 38 H 1.08999 * 109.47415 * 43.93891 * 14 4 2
39 39 H 1.08000 * 119.96399 * 359.97438 * 16 15 14
40 40 H 1.08005 * 120.03783 * 180.26872 * 17 16 15
41 41 H 1.09004 * 109.46503 * 294.17450 * 20 19 18
42 42 H 1.09001 * 109.46340 * 54.14208 * 20 19 18
43 43 H 1.09004 * 109.50047 * 299.23794 * 21 20 19
44 44 H 1.08998 * 109.50598 * 179.12298 * 21 20 19
45 45 H 1.09000 * 109.52469 * 182.44594 * 22 21 20
46 46 H 1.09001 * 109.52217 * 62.24929 * 22 21 20
47 47 H 1.08993 * 109.50908 * 297.71433 * 23 22 21
48 48 H 1.08998 * 109.50308 * 177.59061 * 23 22 21
49 49 H 1.09002 * 109.46400 * 305.85655 * 24 19 18
50 50 H 1.08993 * 109.46286 * 65.82775 * 24 19 18
51 51 H 1.08001 * 120.04026 * 180.02562 * 25 18 17
52 52 H 1.07993 * 119.96349 * 179.97438 * 26 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 3.4505 -1.0033 1.0806
6 6 3.6562 -2.0088 -0.0230
7 1 2.8089 -2.3795 -0.5806
8 6 4.9262 -2.4554 -0.3207
9 7 5.9582 -2.0036 0.3580
10 14 5.1812 -3.7011 -1.6891
11 1 5.3997 -2.9880 -2.9732
12 1 6.3675 -4.5394 -1.3805
13 1 3.9795 -4.5661 -1.8014
14 6 1.7509 0.0962 2.4093
15 6 1.8944 -0.7834 3.6245
16 6 0.8265 -1.5525 4.0493
17 6 0.9563 -2.3639 5.1592
18 6 2.1577 -2.3984 5.8558
19 7 2.2905 -3.2134 6.9823
20 6 3.4257 -4.1331 6.8356
21 6 3.6300 -4.9058 8.1408
22 6 2.3552 -5.6872 8.4705
23 6 1.1793 -4.7115 8.5702
24 6 1.0461 -3.9448 7.2523
25 6 3.2266 -1.6203 5.4296
26 6 3.0916 -0.8150 4.3158
27 1 -0.3633 0.4812 0.9080
28 1 -0.3633 0.5459 -0.8708
29 1 -0.3633 -1.0270 -0.0374
30 1 1.8933 -0.5138 -0.8900
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9563 -0.8900
33 1 1.6767 1.9563 0.8899
34 1 4.0023 -0.0921 0.8495
35 1 3.8116 -1.4178 2.0218
36 1 6.8516 -2.3175 0.1483
37 1 2.4619 0.9201 2.4712
38 1 0.7369 0.4937 2.3661
39 1 -0.1088 -1.5216 3.5101
40 1 0.1233 -2.9677 5.4880
41 1 3.2226 -4.8346 6.0264
42 1 4.3266 -3.5644 6.6054
43 1 3.8469 -4.2059 8.9478
44 1 4.4629 -5.5996 8.0265
45 1 2.4808 -6.2045 9.4217
46 1 2.1595 -6.4142 7.6823
47 1 1.3575 -4.0086 9.3838
48 1 0.2612 -5.2667 8.7625
49 1 0.2185 -3.2391 7.3249
50 1 0.8543 -4.6470 6.4412
51 1 4.1622 -1.6451 5.9686
52 1 3.9221 -0.2095 3.9841
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000768766008.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:22:07
Heat of formation + Delta-G solvation = 8.416985 kcal
Electronic energy + Delta-G solvation = -27226.773885 eV
Core-core repulsion = 23803.770910 eV
Total energy + Delta-G solvation = -3423.002976 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.32194 -39.76913 -38.33969 -34.95212 -34.83318 -32.60945 -32.52187 -31.32583
-30.81377 -28.52720 -27.96917 -26.32817 -24.90178 -24.74831 -23.83228 -22.56337
-21.91310 -20.62473 -20.19515 -18.45890 -18.29228 -17.19856 -16.61132 -16.47733
-16.10626 -15.85720 -15.76850 -15.23953 -15.00310 -14.99074 -14.79421 -14.57207
-14.41152 -14.14920 -14.02717 -13.88919 -13.59262 -13.39568 -13.19082 -12.95732
-12.74458 -12.70099 -12.56320 -12.36646 -12.27280 -12.11958 -12.07106 -11.87407
-11.70716 -11.68023 -11.38308 -11.37801 -11.27352 -11.13197 -10.58141 -10.44183
-9.77213 -8.88939 -8.63357 -8.17224 -6.25439 0.47765 0.56348 1.37982
1.39130 1.50393 2.40007 2.63637 2.97749 3.15307 3.53435 3.78657
3.84934 3.98421 4.04501 4.06651 4.11462 4.16267 4.21607 4.35406
4.38454 4.42963 4.51260 4.53762 4.59701 4.61490 4.65081 4.71217
4.78957 4.83434 4.85482 4.88415 4.92540 4.95773 5.03548 5.10349
5.11898 5.17621 5.21748 5.24624 5.29466 5.32465 5.38875 5.43972
5.46284 5.51657 5.58389 5.70011 5.85557 5.88172 6.11352 6.13758
6.40523 6.49382 6.74374 6.91948 7.43020 8.93268
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.011727 B = 0.003765 C = 0.003127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2387.125927 B = 7434.636930 C = 8953.274529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.073 3.927
3 C -0.172 4.172
4 N -0.529 5.529
5 C 0.210 3.790
6 C -0.517 4.517
7 H 0.058 0.942
8 C 0.004 3.996
9 N -0.933 5.933
10 Si 0.960 3.040
11 H -0.272 1.272
12 H -0.283 1.283
13 H -0.267 1.267
14 C 0.097 3.903
15 C -0.103 4.103
16 C -0.077 4.077
17 C -0.174 4.174
18 C 0.099 3.901
19 N -0.490 5.490
20 C 0.054 3.946
21 C -0.113 4.113
22 C -0.122 4.122
23 C -0.112 4.112
24 C 0.046 3.954
25 C -0.151 4.151
26 C -0.097 4.097
27 H 0.063 0.937
28 H 0.071 0.929
29 H 0.052 0.948
30 H 0.061 0.939
31 H 0.025 0.975
32 H 0.073 0.927
33 H 0.063 0.937
34 H -0.039 1.039
35 H 0.010 0.990
36 H 0.262 0.738
37 H 0.021 0.979
38 H 0.097 0.903
39 H 0.136 0.864
40 H 0.146 0.854
41 H 0.029 0.971
42 H 0.070 0.930
43 H 0.072 0.928
44 H 0.079 0.921
45 H 0.083 0.917
46 H 0.058 0.942
47 H 0.070 0.930
48 H 0.088 0.912
49 H 0.087 0.913
50 H 0.040 0.960
51 H 0.122 0.878
52 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.817 -2.253 14.426 18.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.036 4.036
3 C -0.231 4.231
4 N -0.253 5.253
5 C 0.084 3.916
6 C -0.556 4.556
7 H 0.076 0.924
8 C -0.194 4.194
9 N -0.574 5.574
10 Si 0.785 3.215
11 H -0.198 1.198
12 H -0.209 1.209
13 H -0.191 1.191
14 C -0.030 4.030
15 C -0.104 4.104
16 C -0.096 4.096
17 C -0.194 4.194
18 C 0.002 3.998
19 N -0.206 5.206
20 C -0.072 4.072
21 C -0.151 4.151
22 C -0.160 4.160
23 C -0.150 4.150
24 C -0.081 4.081
25 C -0.171 4.171
26 C -0.117 4.117
27 H 0.081 0.919
28 H 0.090 0.910
29 H 0.071 0.929
30 H 0.079 0.921
31 H 0.044 0.956
32 H 0.092 0.908
33 H 0.082 0.918
34 H -0.022 1.022
35 H 0.028 0.972
36 H 0.070 0.930
37 H 0.040 0.960
38 H 0.115 0.885
39 H 0.154 0.846
40 H 0.163 0.837
41 H 0.047 0.953
42 H 0.088 0.912
43 H 0.091 0.909
44 H 0.098 0.902
45 H 0.101 0.899
46 H 0.077 0.923
47 H 0.089 0.911
48 H 0.107 0.893
49 H 0.106 0.894
50 H 0.058 0.942
51 H 0.140 0.860
52 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -11.782 -2.477 14.939 19.187
hybrid contribution 1.431 -0.020 -1.598 2.145
sum -10.351 -2.497 13.341 17.070
Atomic orbital electron populations
1.21753 0.92754 1.01893 1.02164 1.21690 0.96355 0.92093 0.93418
1.22344 0.99942 0.98148 1.02622 1.62277 1.18301 1.43409 1.01311
1.19348 0.83392 0.93114 0.95760 1.21478 0.92567 1.24235 1.17313
0.92392 1.25814 0.95751 0.98729 0.99124 1.70088 0.99211 1.45617
1.42460 0.85517 0.77712 0.78969 0.79261 1.19802 1.20899 1.19115
1.21011 1.01101 0.92728 0.88189 1.19835 0.94066 1.00099 0.96397
1.20983 0.98635 0.94572 0.95379 1.21448 0.98469 1.02800 0.96716
1.18985 0.94476 0.96227 0.90118 1.59135 1.06669 1.21757 1.33044
1.22273 0.92727 0.93766 0.98395 1.21613 0.98834 0.98763 0.95865
1.21620 0.94302 0.97617 1.02421 1.21615 0.99410 0.97937 0.96053
1.22392 0.90785 0.96588 0.98292 1.20751 0.98906 0.99104 0.98334
1.20940 0.96778 0.98836 0.95105 0.91852 0.90973 0.92911 0.92077
0.95605 0.90841 0.91765 1.02155 0.97205 0.92966 0.96030 0.88523
0.84594 0.83657 0.95285 0.91193 0.90881 0.90231 0.89888 0.92345
0.91084 0.89312 0.89445 0.94166 0.85993 0.88026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.66 9.26 71.98 0.67 -2.99 16
2 C 0.07 2.75 2.76 44.92 0.12 2.88 16
3 C -0.17 -5.90 8.44 71.98 0.61 -5.29 16
4 N -0.53 -22.85 4.36 -880.04 -3.84 -26.68 16
5 C 0.21 11.35 4.46 85.56 0.38 11.73 16
6 C -0.52 -29.96 8.31 25.60 0.21 -29.75 16
7 H 0.06 3.32 7.23 -2.91 -0.02 3.30 16
8 C 0.00 0.20 5.46 84.65 0.46 0.67 16
9 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16
10 Si 0.96 45.37 29.54 68.60 2.03 47.40 16
11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16
12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
14 C 0.10 3.55 3.70 85.56 0.32 3.87 16
15 C -0.10 -3.77 4.94 -19.84 -0.10 -3.86 16
16 C -0.08 -2.44 9.71 22.25 0.22 -2.23 16
17 C -0.17 -5.09 8.82 22.40 0.20 -4.89 16
18 C 0.10 3.08 5.64 38.21 0.22 3.30 16
19 N -0.49 -12.65 4.70 -695.38 -3.27 -15.92 16
20 C 0.05 1.34 5.26 86.33 0.45 1.80 16
21 C -0.11 -2.06 6.09 30.65 0.19 -1.87 16
22 C -0.12 -1.85 6.00 30.67 0.18 -1.67 16
23 C -0.11 -1.71 6.09 30.65 0.19 -1.53 16
24 C 0.05 0.93 4.15 86.33 0.36 1.29 16
25 C -0.15 -5.23 9.16 22.40 0.21 -5.02 16
26 C -0.10 -3.74 8.25 22.25 0.18 -3.55 16
27 H 0.06 1.60 6.38 -2.39 -0.02 1.58 16
28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16
29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
30 H 0.06 2.68 6.60 -2.39 -0.02 2.66 16
31 H 0.02 1.04 6.74 -2.39 -0.02 1.02 16
32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.06 1.96 6.64 -2.39 -0.02 1.95 16
34 H -0.04 -2.31 6.61 -2.39 -0.02 -2.32 16
35 H 0.01 0.58 6.12 -2.39 -0.01 0.57 16
36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16
37 H 0.02 0.83 7.07 -2.39 -0.02 0.81 16
38 H 0.10 2.95 6.07 -2.39 -0.01 2.93 16
39 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16
40 H 0.15 3.41 5.81 -2.91 -0.02 3.40 16
41 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16
42 H 0.07 1.88 6.70 -2.39 -0.02 1.87 16
43 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16
44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
49 H 0.09 1.64 6.98 -2.39 -0.02 1.63 16
50 H 0.04 0.85 7.74 -2.39 -0.02 0.83 16
51 H 0.12 3.97 7.15 -2.91 -0.02 3.95 16
52 H 0.10 4.14 8.01 -2.91 -0.02 4.12 16
Total: -1.00 -67.00 389.35 1.14 -65.86
By element:
Atomic # 1 Polarization: 22.56 SS G_CDS: 0.87 Total: 23.44 kcal
Atomic # 6 Polarization: -42.20 SS G_CDS: 5.06 Total: -37.13 kcal
Atomic # 7 Polarization: -92.75 SS G_CDS: -6.82 Total: -99.57 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -67.00 1.14 -65.86 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000768766008.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.279 kcal
(2) G-P(sol) polarization free energy of solvation -67.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds