Wall clock time and date at job start Tue Mar 31 2020 11:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 N 1.46898 * 109.47138 * 120.00268 * 2 1 3 5 5 C 1.46899 * 111.00089 * 166.13792 * 4 2 1 6 6 C 1.50698 * 109.47055 * 293.95174 * 5 4 2 7 7 H 1.07998 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99706 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00265 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99787 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46959 * 90.00139 * 10 8 6 12 12 H 1.48501 * 109.46846 * 209.99701 * 10 8 6 13 13 H 1.48497 * 109.47193 * 329.99727 * 10 8 6 14 14 C 1.46908 * 110.99535 * 290.09309 * 4 2 1 15 15 C 1.50701 * 109.46956 * 163.94002 * 14 4 2 16 16 C 1.38288 * 119.92209 * 274.95866 * 15 14 4 17 17 C 1.38106 * 120.07017 * 179.72707 * 16 15 14 18 18 C 1.38911 * 119.92547 * 0.54300 * 17 16 15 19 19 N 1.39677 * 120.07617 * 179.71039 * 18 17 16 20 20 C 1.46839 * 111.00347 * 124.22798 * 19 18 17 21 21 C 1.53040 * 109.52599 * 174.16165 * 20 19 18 22 22 C 1.53117 * 109.27898 * 59.17728 * 21 20 19 23 23 C 1.53121 * 109.16084 * 302.34822 * 22 21 20 24 24 C 1.46851 * 110.99617 * 0.02562 * 19 18 17 25 25 C 1.38911 * 119.85329 * 359.72474 * 18 17 16 26 26 C 1.38111 * 119.92322 * 0.02562 * 25 18 17 27 27 H 1.08996 * 109.47000 * 297.91997 * 1 2 3 28 28 H 1.09007 * 109.47040 * 57.91757 * 1 2 3 29 29 H 1.09000 * 109.46943 * 177.91486 * 1 2 3 30 30 H 1.09000 * 109.46879 * 240.00216 * 2 1 3 31 31 H 1.08997 * 109.46930 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47148 * 299.99872 * 3 2 1 33 33 H 1.08993 * 109.47356 * 60.00120 * 3 2 1 34 34 H 1.09003 * 109.46956 * 53.95421 * 5 4 2 35 35 H 1.09003 * 109.46774 * 173.94634 * 5 4 2 36 36 H 0.96992 * 120.00157 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46878 * 283.93392 * 14 4 2 38 38 H 1.08999 * 109.47415 * 43.93891 * 14 4 2 39 39 H 1.08000 * 119.96399 * 359.97438 * 16 15 14 40 40 H 1.08005 * 120.03783 * 180.26872 * 17 16 15 41 41 H 1.09004 * 109.46503 * 294.17450 * 20 19 18 42 42 H 1.09001 * 109.46340 * 54.14208 * 20 19 18 43 43 H 1.09004 * 109.50047 * 299.23794 * 21 20 19 44 44 H 1.08998 * 109.50598 * 179.12298 * 21 20 19 45 45 H 1.09000 * 109.52469 * 182.44594 * 22 21 20 46 46 H 1.09001 * 109.52217 * 62.24929 * 22 21 20 47 47 H 1.08993 * 109.50908 * 297.71433 * 23 22 21 48 48 H 1.08998 * 109.50308 * 177.59061 * 23 22 21 49 49 H 1.09002 * 109.46400 * 305.85655 * 24 19 18 50 50 H 1.08993 * 109.46286 * 65.82775 * 24 19 18 51 51 H 1.08001 * 120.04026 * 180.02562 * 25 18 17 52 52 H 1.07993 * 119.96349 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4505 -1.0033 1.0806 6 6 3.6562 -2.0088 -0.0230 7 1 2.8089 -2.3795 -0.5806 8 6 4.9262 -2.4554 -0.3207 9 7 5.9582 -2.0036 0.3580 10 14 5.1812 -3.7011 -1.6891 11 1 5.3997 -2.9880 -2.9732 12 1 6.3675 -4.5394 -1.3805 13 1 3.9795 -4.5661 -1.8014 14 6 1.7509 0.0962 2.4093 15 6 1.8944 -0.7834 3.6245 16 6 0.8265 -1.5525 4.0493 17 6 0.9563 -2.3639 5.1592 18 6 2.1577 -2.3984 5.8558 19 7 2.2905 -3.2134 6.9823 20 6 3.4257 -4.1331 6.8356 21 6 3.6300 -4.9058 8.1408 22 6 2.3552 -5.6872 8.4705 23 6 1.1793 -4.7115 8.5702 24 6 1.0461 -3.9448 7.2523 25 6 3.2266 -1.6203 5.4296 26 6 3.0916 -0.8150 4.3158 27 1 -0.3633 0.4812 0.9080 28 1 -0.3633 0.5459 -0.8708 29 1 -0.3633 -1.0270 -0.0374 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 4.0023 -0.0921 0.8495 35 1 3.8116 -1.4178 2.0218 36 1 6.8516 -2.3175 0.1483 37 1 2.4619 0.9201 2.4712 38 1 0.7369 0.4937 2.3661 39 1 -0.1088 -1.5216 3.5101 40 1 0.1233 -2.9677 5.4880 41 1 3.2226 -4.8346 6.0264 42 1 4.3266 -3.5644 6.6054 43 1 3.8469 -4.2059 8.9478 44 1 4.4629 -5.5996 8.0265 45 1 2.4808 -6.2045 9.4217 46 1 2.1595 -6.4142 7.6823 47 1 1.3575 -4.0086 9.3838 48 1 0.2612 -5.2667 8.7625 49 1 0.2185 -3.2391 7.3249 50 1 0.8543 -4.6470 6.4412 51 1 4.1622 -1.6451 5.9686 52 1 3.9221 -0.2095 3.9841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768766008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:07 Heat of formation + Delta-G solvation = 8.416985 kcal Electronic energy + Delta-G solvation = -27226.773885 eV Core-core repulsion = 23803.770910 eV Total energy + Delta-G solvation = -3423.002976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32194 -39.76913 -38.33969 -34.95212 -34.83318 -32.60945 -32.52187 -31.32583 -30.81377 -28.52720 -27.96917 -26.32817 -24.90178 -24.74831 -23.83228 -22.56337 -21.91310 -20.62473 -20.19515 -18.45890 -18.29228 -17.19856 -16.61132 -16.47733 -16.10626 -15.85720 -15.76850 -15.23953 -15.00310 -14.99074 -14.79421 -14.57207 -14.41152 -14.14920 -14.02717 -13.88919 -13.59262 -13.39568 -13.19082 -12.95732 -12.74458 -12.70099 -12.56320 -12.36646 -12.27280 -12.11958 -12.07106 -11.87407 -11.70716 -11.68023 -11.38308 -11.37801 -11.27352 -11.13197 -10.58141 -10.44183 -9.77213 -8.88939 -8.63357 -8.17224 -6.25439 0.47765 0.56348 1.37982 1.39130 1.50393 2.40007 2.63637 2.97749 3.15307 3.53435 3.78657 3.84934 3.98421 4.04501 4.06651 4.11462 4.16267 4.21607 4.35406 4.38454 4.42963 4.51260 4.53762 4.59701 4.61490 4.65081 4.71217 4.78957 4.83434 4.85482 4.88415 4.92540 4.95773 5.03548 5.10349 5.11898 5.17621 5.21748 5.24624 5.29466 5.32465 5.38875 5.43972 5.46284 5.51657 5.58389 5.70011 5.85557 5.88172 6.11352 6.13758 6.40523 6.49382 6.74374 6.91948 7.43020 8.93268 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003765 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.125927 B = 7434.636930 C = 8953.274529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.073 3.927 3 C -0.172 4.172 4 N -0.529 5.529 5 C 0.210 3.790 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.097 3.903 15 C -0.103 4.103 16 C -0.077 4.077 17 C -0.174 4.174 18 C 0.099 3.901 19 N -0.490 5.490 20 C 0.054 3.946 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.112 4.112 24 C 0.046 3.954 25 C -0.151 4.151 26 C -0.097 4.097 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.063 0.937 34 H -0.039 1.039 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.021 0.979 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.029 0.971 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.040 0.960 51 H 0.122 0.878 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 -2.253 14.426 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.036 4.036 3 C -0.231 4.231 4 N -0.253 5.253 5 C 0.084 3.916 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.191 1.191 14 C -0.030 4.030 15 C -0.104 4.104 16 C -0.096 4.096 17 C -0.194 4.194 18 C 0.002 3.998 19 N -0.206 5.206 20 C -0.072 4.072 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.081 4.081 25 C -0.171 4.171 26 C -0.117 4.117 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.082 0.918 34 H -0.022 1.022 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.058 0.942 51 H 0.140 0.860 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.782 -2.477 14.939 19.187 hybrid contribution 1.431 -0.020 -1.598 2.145 sum -10.351 -2.497 13.341 17.070 Atomic orbital electron populations 1.21753 0.92754 1.01893 1.02164 1.21690 0.96355 0.92093 0.93418 1.22344 0.99942 0.98148 1.02622 1.62277 1.18301 1.43409 1.01311 1.19348 0.83392 0.93114 0.95760 1.21478 0.92567 1.24235 1.17313 0.92392 1.25814 0.95751 0.98729 0.99124 1.70088 0.99211 1.45617 1.42460 0.85517 0.77712 0.78969 0.79261 1.19802 1.20899 1.19115 1.21011 1.01101 0.92728 0.88189 1.19835 0.94066 1.00099 0.96397 1.20983 0.98635 0.94572 0.95379 1.21448 0.98469 1.02800 0.96716 1.18985 0.94476 0.96227 0.90118 1.59135 1.06669 1.21757 1.33044 1.22273 0.92727 0.93766 0.98395 1.21613 0.98834 0.98763 0.95865 1.21620 0.94302 0.97617 1.02421 1.21615 0.99410 0.97937 0.96053 1.22392 0.90785 0.96588 0.98292 1.20751 0.98906 0.99104 0.98334 1.20940 0.96778 0.98836 0.95105 0.91852 0.90973 0.92911 0.92077 0.95605 0.90841 0.91765 1.02155 0.97205 0.92966 0.96030 0.88523 0.84594 0.83657 0.95285 0.91193 0.90881 0.90231 0.89888 0.92345 0.91084 0.89312 0.89445 0.94166 0.85993 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.26 71.98 0.67 -2.99 16 2 C 0.07 2.75 2.76 44.92 0.12 2.88 16 3 C -0.17 -5.90 8.44 71.98 0.61 -5.29 16 4 N -0.53 -22.85 4.36 -880.04 -3.84 -26.68 16 5 C 0.21 11.35 4.46 85.56 0.38 11.73 16 6 C -0.52 -29.96 8.31 25.60 0.21 -29.75 16 7 H 0.06 3.32 7.23 -2.91 -0.02 3.30 16 8 C 0.00 0.20 5.46 84.65 0.46 0.67 16 9 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 10 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 C 0.10 3.55 3.70 85.56 0.32 3.87 16 15 C -0.10 -3.77 4.94 -19.84 -0.10 -3.86 16 16 C -0.08 -2.44 9.71 22.25 0.22 -2.23 16 17 C -0.17 -5.09 8.82 22.40 0.20 -4.89 16 18 C 0.10 3.08 5.64 38.21 0.22 3.30 16 19 N -0.49 -12.65 4.70 -695.38 -3.27 -15.92 16 20 C 0.05 1.34 5.26 86.33 0.45 1.80 16 21 C -0.11 -2.06 6.09 30.65 0.19 -1.87 16 22 C -0.12 -1.85 6.00 30.67 0.18 -1.67 16 23 C -0.11 -1.71 6.09 30.65 0.19 -1.53 16 24 C 0.05 0.93 4.15 86.33 0.36 1.29 16 25 C -0.15 -5.23 9.16 22.40 0.21 -5.02 16 26 C -0.10 -3.74 8.25 22.25 0.18 -3.55 16 27 H 0.06 1.60 6.38 -2.39 -0.02 1.58 16 28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 2.68 6.60 -2.39 -0.02 2.66 16 31 H 0.02 1.04 6.74 -2.39 -0.02 1.02 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.96 6.64 -2.39 -0.02 1.95 16 34 H -0.04 -2.31 6.61 -2.39 -0.02 -2.32 16 35 H 0.01 0.58 6.12 -2.39 -0.01 0.57 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.02 0.83 7.07 -2.39 -0.02 0.81 16 38 H 0.10 2.95 6.07 -2.39 -0.01 2.93 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.15 3.41 5.81 -2.91 -0.02 3.40 16 41 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.07 1.88 6.70 -2.39 -0.02 1.87 16 43 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.09 1.64 6.98 -2.39 -0.02 1.63 16 50 H 0.04 0.85 7.74 -2.39 -0.02 0.83 16 51 H 0.12 3.97 7.15 -2.91 -0.02 3.95 16 52 H 0.10 4.14 8.01 -2.91 -0.02 4.12 16 Total: -1.00 -67.00 389.35 1.14 -65.86 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.87 Total: 23.44 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 5.06 Total: -37.13 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -6.82 Total: -99.57 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.00 1.14 -65.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768766008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.279 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds