Wall clock time and date at job start Tue Mar 31 2020 11:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52995 * 117.50322 * 243.62346 * 6 5 4 8 8 C 1.52999 * 60.00223 * 252.50829 * 7 6 5 9 9 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 10 10 C 1.46900 * 110.99981 * 274.99476 * 9 2 1 11 11 C 1.50705 * 109.47101 * 180.02562 * 10 9 2 12 12 C 1.38278 * 119.92673 * 269.73241 * 11 10 9 13 13 C 1.38110 * 120.07541 * 179.72866 * 12 11 10 14 14 C 1.38911 * 119.91749 * 0.53871 * 13 12 11 15 15 N 1.39680 * 120.06801 * 179.75276 * 14 13 12 16 16 C 1.46497 * 119.99711 * 179.97438 * 15 14 13 17 17 C 1.46500 * 120.00282 * 359.97438 * 15 14 13 18 18 C 1.50699 * 109.47010 * 90.00026 * 17 15 14 19 19 H 1.07991 * 120.00167 * 0.02562 * 18 17 15 20 20 C 1.37874 * 119.99604 * 180.02562 * 18 17 15 21 21 N 1.31517 * 120.00325 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99761 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47058 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47010 * 119.99925 * 22 20 18 25 25 H 1.48502 * 109.47196 * 239.99902 * 22 20 18 26 26 C 1.38905 * 119.85758 * 359.73445 * 14 13 12 27 27 C 1.38105 * 119.92243 * 359.97438 * 26 14 13 28 28 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 29 29 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 35 35 H 1.09005 * 115.54879 * 29.32806 * 6 5 4 36 36 H 1.09004 * 117.49787 * 359.97438 * 7 6 5 37 37 H 1.09002 * 117.50423 * 145.01738 * 7 6 5 38 38 H 1.09000 * 117.49408 * 252.50795 * 8 7 6 39 39 H 1.09001 * 117.50131 * 107.48609 * 8 7 6 40 40 H 1.00900 * 111.00332 * 38.95526 * 9 2 1 41 41 H 1.08996 * 109.47628 * 300.00315 * 10 9 2 42 42 H 1.09001 * 109.46729 * 60.00435 * 10 9 2 43 43 H 1.08003 * 119.96388 * 359.97438 * 12 11 10 44 44 H 1.07993 * 120.03917 * 180.27292 * 13 12 11 45 45 H 1.09004 * 109.47492 * 90.00198 * 16 15 14 46 46 H 1.08996 * 109.47204 * 209.99739 * 16 15 14 47 47 H 1.09001 * 109.47527 * 329.99958 * 16 15 14 48 48 H 1.09004 * 109.47083 * 209.99996 * 17 15 14 49 49 H 1.09002 * 109.47086 * 330.00072 * 17 15 14 50 50 H 0.97001 * 119.99780 * 180.02562 * 21 20 18 51 51 H 1.07995 * 120.03935 * 179.97438 * 26 14 13 52 52 H 1.07997 * 119.96188 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 6 4.9763 -2.5528 -2.3575 8 6 5.5702 -1.2401 -2.8722 9 7 2.0196 -0.6926 1.1994 10 6 2.0825 0.2225 2.3469 11 6 2.5886 -0.5217 3.5557 12 6 1.6944 -1.1474 4.4049 13 6 2.1551 -1.8350 5.5105 14 6 3.5178 -1.8880 5.7751 15 7 3.9868 -2.5782 6.8952 16 6 5.4242 -2.6336 7.1725 17 6 3.0414 -3.2466 7.7928 18 6 2.8209 -4.6625 7.3260 19 1 3.3340 -5.0279 6.4488 20 6 1.9641 -5.4911 8.0188 21 7 1.3388 -5.0459 9.0868 22 14 1.6913 -7.2464 7.4407 23 1 2.5061 -7.4995 6.2252 24 1 2.0972 -8.1897 8.5134 25 1 0.2541 -7.4456 7.1241 26 6 4.4129 -1.2536 4.9232 27 6 3.9457 -0.5729 3.8161 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8531 0.4369 -1.3574 34 1 3.9994 -1.0728 -0.4261 35 1 3.3865 -1.3537 -3.4084 36 1 5.2066 -2.8410 -1.3318 37 1 4.8814 -3.3747 -3.0671 38 1 5.8660 -1.1984 -3.9205 39 1 6.1909 -0.6648 -2.1852 40 1 1.4496 -1.4980 1.4100 41 1 2.7589 1.0461 2.1183 42 1 1.0871 0.6162 2.5525 43 1 0.6347 -1.1018 4.2011 44 1 1.4566 -2.3272 6.1708 45 1 5.7058 -1.7891 7.8015 46 1 5.6592 -3.5648 7.6880 47 1 5.9773 -2.5882 6.2344 48 1 3.4462 -3.2566 8.8048 49 1 2.0927 -2.7100 7.7861 50 1 0.7363 -5.6291 9.5744 51 1 5.4728 -1.2926 5.1263 52 1 4.6411 -0.0790 3.1535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768953862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:23 Heat of formation + Delta-G solvation = 37.066560 kcal Electronic energy + Delta-G solvation = -25896.030275 eV Core-core repulsion = 22474.269638 eV Total energy + Delta-G solvation = -3421.760637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.09949 -38.21501 -37.04508 -35.60175 -32.92055 -32.30682 -30.42505 -30.11889 -28.57382 -27.78193 -25.63827 -24.46971 -23.68003 -22.50067 -22.12603 -21.45106 -20.71260 -20.41147 -19.53177 -16.69269 -16.47565 -15.98648 -15.52760 -15.39801 -15.11591 -14.71301 -14.45197 -14.14873 -13.77576 -13.65168 -13.62016 -13.30149 -12.96957 -12.91772 -12.83687 -12.31656 -12.18236 -11.88580 -11.79794 -11.67290 -11.65815 -11.39030 -11.34241 -11.25142 -11.10892 -10.92743 -10.87794 -10.69342 -10.55862 -10.27494 -10.23190 -9.92987 -9.86989 -9.73746 -8.83155 -8.51505 -8.30013 -8.22377 -6.45718 -6.01685 -4.17838 2.13168 2.24932 3.24874 3.33051 3.38421 3.67226 4.14740 4.24285 4.41220 4.43679 4.68944 4.77611 4.82244 4.90908 4.97054 5.17898 5.21077 5.23912 5.30534 5.34994 5.40393 5.48892 5.55901 5.62288 5.64206 5.67373 5.72180 5.82781 5.83816 5.84439 5.90543 5.94988 5.99837 6.03033 6.06755 6.09170 6.21180 6.29786 6.40652 6.43420 6.45281 6.66672 6.94606 7.03410 7.15256 7.22756 7.27156 7.34869 7.50770 7.62562 7.81014 8.15472 8.27542 8.50012 8.91902 9.49151 10.95067 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.002661 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.382328 B =10520.449974 C =10706.299456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.074 0.926 4 C -0.102 4.102 5 C -0.082 4.082 6 C -0.152 4.152 7 C -0.180 4.180 8 C -0.186 4.186 9 N -0.678 5.678 10 C 0.116 3.884 11 C -0.172 4.172 12 C -0.068 4.068 13 C -0.188 4.188 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.098 3.902 17 C 0.249 3.751 18 C -0.530 4.530 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.223 4.223 27 C -0.051 4.051 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.343 0.657 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.263 0.737 51 H 0.112 0.888 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 11.043 -19.017 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.030 4.030 3 H 0.092 0.908 4 C -0.140 4.140 5 C -0.119 4.119 6 C -0.170 4.170 7 C -0.217 4.217 8 C -0.223 4.223 9 N -0.309 5.309 10 C -0.012 4.012 11 C -0.175 4.175 12 C -0.087 4.087 13 C -0.210 4.210 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.569 4.569 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.246 4.246 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.161 0.839 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.125 0.875 44 H 0.148 0.852 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.130 0.870 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.796 10.948 -18.819 22.100 hybrid contribution -1.172 -1.098 0.005 1.606 sum 2.624 9.850 -18.814 21.397 Atomic orbital electron populations 1.22516 0.97628 1.02172 1.01926 1.21607 0.92141 0.98007 0.91211 0.90796 1.21528 0.95606 1.00787 0.96039 1.21091 0.95412 0.99439 0.95978 1.22411 0.92654 1.01590 1.00326 1.23030 1.04579 0.91586 1.02549 1.22943 0.96417 1.01427 1.01529 1.60680 1.57268 1.09643 1.03278 1.20659 0.98416 0.93993 0.88148 1.19182 0.93619 1.06537 0.98166 1.20650 0.98113 0.95954 0.93990 1.20842 0.94397 1.05238 1.00547 1.17952 0.92667 0.89298 0.86648 1.47096 1.05912 1.53973 1.25191 1.21468 0.82214 1.00908 0.99979 1.19285 0.87989 0.91643 0.88199 1.21622 1.26154 0.96852 1.12229 0.92187 1.24967 0.95523 0.98795 0.94835 1.69942 1.29093 1.36456 1.17970 0.86476 0.78085 0.84367 0.78761 1.19684 1.20953 1.20851 1.20570 0.98435 1.06951 0.98631 1.20475 0.94370 0.96942 0.95275 0.92376 0.92390 0.92710 0.91870 0.92366 0.92475 0.90095 0.88431 0.88511 0.89314 0.89320 0.88902 0.83865 0.91349 0.95413 0.87550 0.85183 0.94649 0.91486 0.92666 0.95230 0.94660 0.92716 0.86967 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.16 37.16 0.34 -1.23 16 2 C 0.08 0.75 2.59 -67.71 -0.18 0.57 16 3 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 4 C -0.10 -0.89 4.85 -26.73 -0.13 -1.02 16 5 C -0.08 -0.77 5.38 -26.74 -0.14 -0.91 16 6 C -0.15 -1.34 5.74 -90.63 -0.52 -1.86 16 7 C -0.18 -1.65 10.18 -26.73 -0.27 -1.92 16 8 C -0.19 -1.58 10.25 -26.73 -0.27 -1.85 16 9 N -0.68 -7.67 5.69 -107.99 -0.61 -8.29 16 10 C 0.12 1.41 5.61 -4.97 -0.03 1.39 16 11 C -0.17 -2.62 5.40 -104.59 -0.56 -3.19 16 12 C -0.07 -1.14 9.69 -39.61 -0.38 -1.53 16 13 C -0.19 -3.79 9.21 -39.38 -0.36 -4.16 16 14 C 0.24 4.91 6.55 -83.79 -0.55 4.36 16 15 N -0.62 -13.27 2.99 -181.00 -0.54 -13.82 16 16 C 0.10 1.74 10.19 59.85 0.61 2.35 16 17 C 0.25 6.25 4.91 -5.19 -0.03 6.23 16 18 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 22 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 C -0.22 -3.91 9.21 -39.38 -0.36 -4.27 16 27 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.91 7.49 -51.93 -0.39 0.52 16 35 H 0.10 0.80 8.08 -51.93 -0.42 0.39 16 36 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.34 4.12 8.46 -39.29 -0.33 3.78 16 41 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 42 H 0.03 0.33 7.38 -51.93 -0.38 -0.06 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.13 2.91 6.14 -52.49 -0.32 2.58 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 52 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 415.28 15.07 6.26 6.26 Total: -1.00 -28.17 415.28 -12.30 -40.47 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -9.47 Total: 5.47 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -3.64 Total: -21.47 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.42 Total: -47.05 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -28.17 -12.30 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768953862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.536 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds