Wall clock time and date at job start Tue Mar 31 2020 11:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52995 * 117.50322 * 243.62346 * 6 5 4 8 8 C 1.52999 * 60.00223 * 252.50829 * 7 6 5 9 9 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 10 10 C 1.46900 * 110.99981 * 274.99476 * 9 2 1 11 11 C 1.50705 * 109.47101 * 180.02562 * 10 9 2 12 12 C 1.38278 * 119.92673 * 269.73241 * 11 10 9 13 13 C 1.38110 * 120.07541 * 179.72866 * 12 11 10 14 14 C 1.38911 * 119.91749 * 0.53871 * 13 12 11 15 15 N 1.39680 * 120.06801 * 179.75276 * 14 13 12 16 16 C 1.46497 * 119.99711 * 179.97438 * 15 14 13 17 17 C 1.46500 * 120.00282 * 359.97438 * 15 14 13 18 18 C 1.50699 * 109.47010 * 90.00026 * 17 15 14 19 19 H 1.07991 * 120.00167 * 0.02562 * 18 17 15 20 20 C 1.37874 * 119.99604 * 180.02562 * 18 17 15 21 21 N 1.31517 * 120.00325 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99761 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47058 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47010 * 119.99925 * 22 20 18 25 25 H 1.48502 * 109.47196 * 239.99902 * 22 20 18 26 26 C 1.38905 * 119.85758 * 359.73445 * 14 13 12 27 27 C 1.38105 * 119.92243 * 359.97438 * 26 14 13 28 28 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 29 29 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 35 35 H 1.09005 * 115.54879 * 29.32806 * 6 5 4 36 36 H 1.09004 * 117.49787 * 359.97438 * 7 6 5 37 37 H 1.09002 * 117.50423 * 145.01738 * 7 6 5 38 38 H 1.09000 * 117.49408 * 252.50795 * 8 7 6 39 39 H 1.09001 * 117.50131 * 107.48609 * 8 7 6 40 40 H 1.00900 * 111.00332 * 38.95526 * 9 2 1 41 41 H 1.08996 * 109.47628 * 300.00315 * 10 9 2 42 42 H 1.09001 * 109.46729 * 60.00435 * 10 9 2 43 43 H 1.08003 * 119.96388 * 359.97438 * 12 11 10 44 44 H 1.07993 * 120.03917 * 180.27292 * 13 12 11 45 45 H 1.09004 * 109.47492 * 90.00198 * 16 15 14 46 46 H 1.08996 * 109.47204 * 209.99739 * 16 15 14 47 47 H 1.09001 * 109.47527 * 329.99958 * 16 15 14 48 48 H 1.09004 * 109.47083 * 209.99996 * 17 15 14 49 49 H 1.09002 * 109.47086 * 330.00072 * 17 15 14 50 50 H 0.97001 * 119.99780 * 180.02562 * 21 20 18 51 51 H 1.07995 * 120.03935 * 179.97438 * 26 14 13 52 52 H 1.07997 * 119.96188 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 6 4.9763 -2.5528 -2.3575 8 6 5.5702 -1.2401 -2.8722 9 7 2.0196 -0.6926 1.1994 10 6 2.0825 0.2225 2.3469 11 6 2.5886 -0.5217 3.5557 12 6 1.6944 -1.1474 4.4049 13 6 2.1551 -1.8350 5.5105 14 6 3.5178 -1.8880 5.7751 15 7 3.9868 -2.5782 6.8952 16 6 5.4242 -2.6336 7.1725 17 6 3.0414 -3.2466 7.7928 18 6 2.8209 -4.6625 7.3260 19 1 3.3340 -5.0279 6.4488 20 6 1.9641 -5.4911 8.0188 21 7 1.3388 -5.0459 9.0868 22 14 1.6913 -7.2464 7.4407 23 1 2.5061 -7.4995 6.2252 24 1 2.0972 -8.1897 8.5134 25 1 0.2541 -7.4456 7.1241 26 6 4.4129 -1.2536 4.9232 27 6 3.9457 -0.5729 3.8161 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8531 0.4369 -1.3574 34 1 3.9994 -1.0728 -0.4261 35 1 3.3865 -1.3537 -3.4084 36 1 5.2066 -2.8410 -1.3318 37 1 4.8814 -3.3747 -3.0671 38 1 5.8660 -1.1984 -3.9205 39 1 6.1909 -0.6648 -2.1852 40 1 1.4496 -1.4980 1.4100 41 1 2.7589 1.0461 2.1183 42 1 1.0871 0.6162 2.5525 43 1 0.6347 -1.1018 4.2011 44 1 1.4566 -2.3272 6.1708 45 1 5.7058 -1.7891 7.8015 46 1 5.6592 -3.5648 7.6880 47 1 5.9773 -2.5882 6.2344 48 1 3.4462 -3.2566 8.8048 49 1 2.0927 -2.7100 7.7861 50 1 0.7363 -5.6291 9.5744 51 1 5.4728 -1.2926 5.1263 52 1 4.6411 -0.0790 3.1535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768953862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:22 Heat of formation + Delta-G solvation = 24.723319 kcal Electronic energy + Delta-G solvation = -25896.565518 eV Core-core repulsion = 22474.269638 eV Total energy + Delta-G solvation = -3422.295880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46802 -39.03353 -37.98120 -36.96712 -34.82333 -33.44493 -31.87197 -31.10722 -29.78873 -29.43137 -27.02778 -25.70027 -24.85794 -23.55666 -23.17268 -22.93614 -21.49336 -21.10934 -20.94841 -18.64228 -18.12510 -16.97927 -16.72729 -16.36953 -16.26695 -16.14498 -15.55848 -15.38431 -15.29268 -14.85303 -14.54170 -14.33457 -14.21578 -14.20038 -14.03719 -13.79644 -13.30717 -13.16658 -13.04736 -12.92063 -12.78070 -12.62966 -12.55365 -12.51162 -12.34919 -12.20252 -12.05835 -11.96434 -11.74853 -11.68288 -11.48631 -11.37555 -10.93712 -10.65320 -10.62258 -10.39514 -9.65135 -9.15661 -8.36594 -7.79280 -6.38113 0.72438 0.86560 1.35361 1.36981 1.49491 2.33883 2.64099 2.99187 3.04793 3.05897 3.57833 3.75016 4.05710 4.08897 4.12462 4.16481 4.21896 4.26080 4.32644 4.41601 4.46589 4.55778 4.56862 4.65738 4.68946 4.72045 4.77761 4.83361 4.86593 4.90171 4.92497 5.00338 5.01293 5.03850 5.14268 5.14832 5.18572 5.22017 5.28703 5.30906 5.34785 5.36704 5.48769 5.59870 5.68422 5.69299 5.70729 5.95241 6.06885 6.20896 6.31098 6.50551 6.56325 6.82875 6.94610 7.33940 8.82717 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.002661 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.382328 B =10520.449974 C =10706.299456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.080 0.920 4 C -0.097 4.097 5 C -0.077 4.077 6 C -0.153 4.153 7 C -0.191 4.191 8 C -0.182 4.182 9 N -0.684 5.684 10 C 0.122 3.878 11 C -0.157 4.157 12 C -0.068 4.068 13 C -0.216 4.216 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.539 4.539 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.277 1.277 26 C -0.219 4.219 27 C -0.049 4.049 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.338 0.662 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.131 0.869 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 11.987 -21.895 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.135 4.135 5 C -0.114 4.114 6 C -0.171 4.171 7 C -0.228 4.228 8 C -0.219 4.219 9 N -0.314 5.314 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.087 4.087 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.341 5.341 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.578 4.578 19 H 0.066 0.934 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.786 3.214 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.202 1.202 26 C -0.241 4.241 27 C -0.068 4.068 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.140 0.860 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.148 0.852 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.370 11.919 -21.727 25.164 hybrid contribution -1.354 -1.286 0.793 2.029 sum 3.016 10.633 -20.934 23.673 Atomic orbital electron populations 1.22468 0.96971 1.02037 1.02381 1.21632 0.92612 0.98045 0.90307 0.90178 1.21492 0.95255 1.00290 0.96423 1.21013 0.95645 0.99455 0.95312 1.22459 0.93070 1.01186 1.00409 1.23045 1.05451 0.92220 1.02131 1.23010 0.96140 1.00587 1.02184 1.60666 1.57669 1.09541 1.03546 1.20625 0.99050 0.93893 0.87075 1.19545 0.93342 1.04714 0.98333 1.20822 0.99404 0.95390 0.93130 1.20753 0.94273 1.07129 1.01747 1.18219 0.93209 0.90648 0.87208 1.46963 1.06646 1.54943 1.25545 1.21592 0.80412 1.01110 1.01362 1.18768 0.87825 0.90924 0.87988 1.21795 1.26181 0.98053 1.11799 0.93369 1.25781 0.95156 1.02877 0.94878 1.70045 1.29658 1.37997 1.18981 0.85455 0.78077 0.79455 0.78383 1.19546 1.19933 1.20209 1.20805 0.98922 1.06101 0.98298 1.20855 0.95110 0.96040 0.94784 0.91046 0.92837 0.93131 0.92836 0.90825 0.92050 0.92128 0.87531 0.89755 0.88678 0.88122 0.89011 0.84440 0.89898 0.94656 0.86042 0.88779 0.92930 0.92554 0.90428 0.97312 0.97132 0.92384 0.85160 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.16 71.98 0.66 -1.97 16 2 C 0.08 1.33 2.59 44.92 0.12 1.44 16 3 H 0.08 1.21 7.80 -2.39 -0.02 1.19 16 4 C -0.10 -1.47 4.85 30.59 0.15 -1.32 16 5 C -0.08 -1.27 5.38 30.59 0.16 -1.11 16 6 C -0.15 -2.41 5.74 -10.80 -0.06 -2.47 16 7 C -0.19 -3.26 10.18 30.59 0.31 -2.95 16 8 C -0.18 -2.74 10.25 30.59 0.31 -2.43 16 9 N -0.68 -13.90 5.69 -495.58 -2.82 -16.72 16 10 C 0.12 2.62 5.61 85.56 0.48 3.10 16 11 C -0.16 -4.47 5.40 -19.84 -0.11 -4.58 16 12 C -0.07 -2.30 9.69 22.25 0.22 -2.09 16 13 C -0.22 -9.12 9.21 22.40 0.21 -8.91 16 14 C 0.21 8.78 6.55 38.21 0.25 9.03 16 15 N -0.63 -28.23 2.99 -726.56 -2.17 -30.40 16 16 C 0.10 3.49 10.19 127.77 1.30 4.79 16 17 C 0.27 14.21 4.91 85.63 0.42 14.63 16 18 C -0.54 -30.70 9.39 25.60 0.24 -30.46 16 19 H 0.05 2.80 7.81 -2.92 -0.02 2.77 16 20 C 0.01 0.69 5.46 84.65 0.46 1.15 16 21 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 22 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C -0.22 -7.37 9.21 22.40 0.21 -7.16 16 27 C -0.05 -1.41 9.69 22.25 0.22 -1.20 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.05 0.79 7.45 -2.38 -0.02 0.77 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.26 7.49 -2.39 -0.02 1.25 16 35 H 0.11 1.49 8.08 -2.38 -0.02 1.47 16 36 H 0.08 1.63 8.03 -2.38 -0.02 1.61 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.34 7.54 8.46 -89.69 -0.76 6.78 16 41 H 0.08 1.60 8.00 -2.39 -0.02 1.58 16 42 H 0.04 0.73 7.38 -2.39 -0.02 0.71 16 43 H 0.12 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.09 4.58 6.14 -2.91 -0.02 4.56 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 2.07 8.07 -2.39 -0.02 2.06 16 47 H 0.08 2.36 6.20 -2.39 -0.01 2.34 16 48 H 0.01 0.50 8.07 -2.38 -0.02 0.48 16 49 H 0.01 0.61 6.20 -2.39 -0.01 0.60 16 50 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 51 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 52 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -62.59 415.28 2.97 -59.62 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.11 Total: 28.00 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 5.54 Total: -32.49 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -4.71 Total: -101.64 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.59 2.97 -59.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768953862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.339 kcal (2) G-P(sol) polarization free energy of solvation -62.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds