Wall clock time and date at job start Tue Mar 31 2020 11:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.77678 * 2 1 4 4 C 1.50809 * 109.74399 * 120.70635 * 2 1 3 5 5 C 1.53827 * 111.62280 * 214.69737 * 4 2 1 6 6 C 1.54173 * 111.96442 * 319.04373 * 5 4 2 7 7 C 1.50753 * 112.60978 * 318.48400 * 6 5 4 8 8 C 1.54434 * 109.02583 * 93.02010 * 7 6 5 9 9 N 1.39773 * 111.77030 * 282.58929 * 8 7 6 10 10 C 1.46900 * 111.00186 * 189.12626 * 9 8 7 11 11 C 1.50700 * 109.47082 * 66.04701 * 10 9 8 12 12 C 1.38286 * 119.92429 * 90.00294 * 11 10 9 13 13 C 1.38102 * 120.07464 * 180.02562 * 12 11 10 14 14 C 1.38910 * 119.92337 * 359.97438 * 13 12 11 15 15 N 1.39677 * 120.07235 * 179.97438 * 14 13 12 16 16 C 1.46504 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.46507 * 120.00026 * 179.97438 * 15 14 13 18 18 C 1.50697 * 109.47006 * 270.00182 * 17 15 14 19 19 H 1.07991 * 120.00449 * 359.72165 * 18 17 15 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 17 23 23 H 1.48493 * 109.47326 * 90.00142 * 22 20 18 24 24 H 1.48506 * 109.46545 * 209.99892 * 22 20 18 25 25 H 1.48498 * 109.47210 * 329.99603 * 22 20 18 26 26 C 1.38910 * 119.85500 * 0.25110 * 14 13 12 27 27 C 1.38104 * 119.92044 * 359.49924 * 26 14 13 28 28 H 1.09003 * 109.47231 * 180.69799 * 1 2 3 29 29 H 1.09000 * 109.47214 * 300.69620 * 1 2 3 30 30 H 1.09003 * 109.47519 * 60.70019 * 1 2 3 31 31 H 1.09000 * 109.05723 * 94.14197 * 4 2 1 32 32 H 1.08999 * 108.99647 * 335.20294 * 4 2 1 33 33 H 1.08990 * 108.98571 * 198.40008 * 5 4 2 34 34 H 1.08996 * 108.91636 * 79.63079 * 5 4 2 35 35 H 1.08998 * 108.85417 * 197.68535 * 6 5 4 36 36 H 1.08991 * 108.77921 * 79.23606 * 6 5 4 37 37 H 1.09006 * 109.54842 * 333.15832 * 7 6 5 38 38 H 1.08995 * 109.54880 * 212.88681 * 7 6 5 39 39 H 1.09004 * 109.01804 * 162.00079 * 8 7 6 40 40 H 1.08999 * 108.95858 * 43.13989 * 8 7 6 41 41 H 1.09001 * 109.46919 * 306.04824 * 10 9 8 42 42 H 1.08997 * 109.47363 * 186.05182 * 10 9 8 43 43 H 1.07998 * 119.95933 * 0.03781 * 12 11 10 44 44 H 1.08001 * 120.04168 * 179.97438 * 13 12 11 45 45 H 1.09002 * 109.46279 * 269.99761 * 16 15 14 46 46 H 1.08997 * 109.47129 * 29.99822 * 16 15 14 47 47 H 1.08996 * 109.46796 * 150.00126 * 16 15 14 48 48 H 1.08998 * 109.47049 * 149.99610 * 17 15 14 49 49 H 1.09001 * 109.46896 * 29.99881 * 17 15 14 50 50 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 51 51 H 1.07999 * 120.04005 * 179.72250 * 26 14 13 52 52 H 1.08000 * 119.96291 * 180.24718 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0256 0.0000 4 6 2.0395 -0.7248 1.2204 5 6 3.3376 -0.0945 1.7533 6 6 4.2951 0.3049 0.6129 7 6 4.3587 -0.7313 -0.4802 8 6 3.3307 -0.3717 -1.5751 9 7 2.0287 -0.7094 -1.1949 10 6 1.0968 -0.5636 -2.3210 11 6 1.4332 -1.5756 -3.3857 12 6 0.8435 -2.8262 -3.3598 13 6 1.1499 -3.7561 -4.3337 14 6 2.0512 -3.4339 -5.3404 15 7 2.3638 -4.3723 -6.3267 16 6 1.7405 -5.6979 -6.3004 17 6 3.3141 -4.0306 -7.3881 18 6 2.5712 -3.4279 -8.5525 19 1 1.4981 -3.3152 -8.5085 20 6 3.2611 -3.0252 -9.6763 21 7 4.5681 -3.1619 -9.7298 22 14 2.3394 -2.2852 -11.1228 23 1 2.2515 -0.8127 -10.9528 24 1 3.0631 -2.5958 -12.3819 25 1 0.9712 -2.8591 -11.1838 26 6 2.6453 -2.1784 -5.3609 27 6 2.3304 -1.2514 -4.3868 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3633 0.5246 0.8837 30 1 -0.3634 0.5029 -0.8962 31 1 2.2297 -1.7665 0.9621 32 1 1.2787 -0.6851 2.0000 33 1 3.8393 -0.8117 2.4028 34 1 3.0870 0.7937 2.3332 35 1 5.2947 0.4440 1.0248 36 1 3.9566 1.2483 0.1847 37 1 4.1233 -1.7122 -0.0671 38 1 5.3598 -0.7463 -0.9108 39 1 3.5839 -0.9076 -2.4899 40 1 3.3780 0.7002 -1.7670 41 1 1.1816 0.4412 -2.7349 42 1 0.0772 -0.7280 -1.9725 43 1 0.1425 -3.0757 -2.5771 44 1 0.6894 -4.7328 -4.3126 45 1 2.3585 -6.3782 -5.7145 46 1 0.7512 -5.6253 -5.8488 47 1 1.6484 -6.0762 -7.3185 48 1 3.8330 -4.9316 -7.7151 49 1 4.0395 -3.3111 -7.0083 50 1 5.0534 -2.8782 -10.5203 51 1 3.3498 -1.9263 -6.1396 52 1 2.7889 -0.2737 -4.4044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769416843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:08 Heat of formation + Delta-G solvation = 33.497891 kcal Electronic energy + Delta-G solvation = -27069.851782 eV Core-core repulsion = 23647.936396 eV Total energy + Delta-G solvation = -3421.915386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07929 -38.67942 -35.98778 -34.48063 -33.37560 -32.65924 -30.43311 -30.13261 -28.29826 -27.77699 -27.00936 -25.09187 -23.92402 -23.32942 -22.24311 -21.42530 -20.33488 -19.45662 -19.31285 -16.65425 -16.46631 -16.17848 -15.80802 -15.28378 -15.07780 -14.71515 -14.34556 -14.23683 -13.96083 -13.67653 -13.42624 -13.29346 -12.93603 -12.85353 -12.72449 -12.37393 -12.23631 -12.07599 -11.80895 -11.70891 -11.46167 -11.38961 -11.23809 -11.20417 -10.95208 -10.71393 -10.66833 -10.60909 -10.55404 -10.37352 -10.27638 -10.23120 -9.85973 -9.72098 -8.79292 -8.50372 -8.22830 -8.01120 -6.43707 -6.00508 -4.17226 2.14309 2.26886 3.26358 3.32813 3.36510 3.98003 4.17716 4.41658 4.59979 4.67227 4.71616 4.85874 4.96445 5.04415 5.14589 5.21577 5.25112 5.31185 5.39680 5.44453 5.57117 5.61418 5.64171 5.67876 5.69019 5.76005 5.80954 5.86827 5.91182 5.93053 6.00918 6.03853 6.07106 6.10435 6.11059 6.22065 6.30460 6.33184 6.38935 6.43770 6.46877 6.68364 6.97480 7.06753 7.22784 7.27516 7.30325 7.37090 7.60776 7.64341 7.81387 8.16343 8.29021 8.51806 8.92114 9.49550 10.95703 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002837 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.778183 B = 9866.448103 C =10138.068676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 H 0.044 0.956 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.118 4.118 8 C 0.069 3.931 9 N -0.542 5.542 10 C 0.105 3.895 11 C -0.166 4.166 12 C -0.052 4.052 13 C -0.222 4.222 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.187 4.187 27 C -0.069 4.069 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.012 0.988 41 H 0.030 0.970 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.130 0.870 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 4.909 20.721 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.016 4.016 3 H 0.062 0.938 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.060 4.060 9 N -0.267 5.267 10 C -0.021 4.021 11 C -0.169 4.169 12 C -0.071 4.071 13 C -0.245 4.245 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.045 4.045 17 C 0.130 3.870 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.210 4.210 27 C -0.088 4.088 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.148 0.852 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.669 4.323 20.543 21.506 hybrid contribution -0.335 1.232 -1.214 1.762 sum -5.005 5.555 19.329 20.725 Atomic orbital electron populations 1.22135 0.94912 1.02565 1.01669 1.21273 0.94343 0.95444 0.90519 0.93794 1.21474 0.96202 1.01263 0.96177 1.21904 0.95876 1.00140 0.97486 1.21428 0.98898 0.99096 0.96350 1.21471 0.98493 0.99822 0.95775 1.21046 0.88435 0.97524 0.98996 1.58903 1.02343 1.60139 1.05286 1.21024 0.96472 0.95668 0.88907 1.19190 1.03454 0.96049 0.98209 1.20447 0.97870 0.92370 0.96453 1.20558 1.04692 1.00787 0.98511 1.17938 0.91659 0.89329 0.87674 1.47087 1.46761 1.11310 1.27066 1.21463 0.96656 0.84719 1.01691 1.19270 0.87456 0.96438 0.83875 1.21587 0.94367 1.40850 1.00157 0.92278 1.24966 0.94860 0.95737 0.98532 1.69933 1.06412 1.47504 1.29574 0.86525 0.79824 0.79600 0.81685 1.20508 1.21148 1.19900 1.20838 1.05181 0.93161 1.01810 1.20662 0.96359 0.98013 0.93775 0.91573 0.92436 0.92082 0.90478 0.92208 0.92377 0.92782 0.92624 0.92682 0.90761 0.91720 0.89696 0.97018 0.95144 0.89745 0.87448 0.86998 0.94658 0.92697 0.91525 0.95267 0.94650 0.92659 0.85224 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 7.67 37.16 0.28 -1.06 16 2 C 0.09 0.91 2.47 -68.41 -0.17 0.74 16 3 H 0.04 0.46 6.66 -51.93 -0.35 0.11 16 4 C -0.11 -1.03 4.98 -27.40 -0.14 -1.17 16 5 C -0.12 -0.99 5.91 -25.69 -0.15 -1.14 16 6 C -0.12 -1.12 5.32 -27.24 -0.14 -1.27 16 7 C -0.12 -1.28 5.65 -27.11 -0.15 -1.43 16 8 C 0.07 0.86 4.74 -6.75 -0.03 0.83 16 9 N -0.54 -6.49 3.92 -233.43 -0.91 -7.41 16 10 C 0.11 1.34 4.31 -4.98 -0.02 1.32 16 11 C -0.17 -2.58 4.86 -104.59 -0.51 -3.09 16 12 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 13 C -0.22 -3.91 9.21 -39.38 -0.36 -4.27 16 14 C 0.24 4.91 6.55 -83.79 -0.55 4.36 16 15 N -0.62 -13.32 2.99 -180.99 -0.54 -13.86 16 16 C 0.10 1.76 10.19 59.85 0.61 2.37 16 17 C 0.25 6.29 4.92 -5.19 -0.03 6.27 16 18 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 22 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.19 -3.81 9.21 -39.38 -0.36 -4.17 16 27 C -0.07 -1.18 7.86 -39.61 -0.31 -1.50 16 28 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.53 6.38 -51.93 -0.33 0.20 16 31 H 0.08 0.82 7.26 -51.93 -0.38 0.44 16 32 H 0.06 0.48 7.70 -51.93 -0.40 0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 37 H 0.07 0.86 7.11 -51.93 -0.37 0.49 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.22 5.31 -51.93 -0.28 0.94 16 40 H 0.01 0.15 7.54 -51.93 -0.39 -0.24 16 41 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 42 H 0.08 0.97 5.26 -51.93 -0.27 0.70 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 47 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 48 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 50 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16 52 H 0.11 1.67 7.90 -52.49 -0.41 1.25 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -28.35 386.94 -11.73 -40.07 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.98 Total: 1.70 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.84 Total: -17.70 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.72 Total: -46.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.35 -11.73 -40.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769416843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.571 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds