Wall clock time and date at job start Tue Mar 31 2020 11:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.77678 * 2 1 4 4 C 1.50809 * 109.74399 * 120.70635 * 2 1 3 5 5 C 1.53827 * 111.62280 * 214.69737 * 4 2 1 6 6 C 1.54173 * 111.96442 * 319.04373 * 5 4 2 7 7 C 1.50753 * 112.60978 * 318.48400 * 6 5 4 8 8 C 1.54434 * 109.02583 * 93.02010 * 7 6 5 9 9 N 1.39773 * 111.77030 * 282.58929 * 8 7 6 10 10 C 1.46900 * 111.00186 * 189.12626 * 9 8 7 11 11 C 1.50700 * 109.47082 * 66.04701 * 10 9 8 12 12 C 1.38286 * 119.92429 * 90.00294 * 11 10 9 13 13 C 1.38102 * 120.07464 * 180.02562 * 12 11 10 14 14 C 1.38910 * 119.92337 * 359.97438 * 13 12 11 15 15 N 1.39677 * 120.07235 * 179.97438 * 14 13 12 16 16 C 1.46504 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.46507 * 120.00026 * 179.97438 * 15 14 13 18 18 C 1.50697 * 109.47006 * 270.00182 * 17 15 14 19 19 H 1.07991 * 120.00449 * 359.72165 * 18 17 15 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 17 23 23 H 1.48493 * 109.47326 * 90.00142 * 22 20 18 24 24 H 1.48506 * 109.46545 * 209.99892 * 22 20 18 25 25 H 1.48498 * 109.47210 * 329.99603 * 22 20 18 26 26 C 1.38910 * 119.85500 * 0.25110 * 14 13 12 27 27 C 1.38104 * 119.92044 * 359.49924 * 26 14 13 28 28 H 1.09003 * 109.47231 * 180.69799 * 1 2 3 29 29 H 1.09000 * 109.47214 * 300.69620 * 1 2 3 30 30 H 1.09003 * 109.47519 * 60.70019 * 1 2 3 31 31 H 1.09000 * 109.05723 * 94.14197 * 4 2 1 32 32 H 1.08999 * 108.99647 * 335.20294 * 4 2 1 33 33 H 1.08990 * 108.98571 * 198.40008 * 5 4 2 34 34 H 1.08996 * 108.91636 * 79.63079 * 5 4 2 35 35 H 1.08998 * 108.85417 * 197.68535 * 6 5 4 36 36 H 1.08991 * 108.77921 * 79.23606 * 6 5 4 37 37 H 1.09006 * 109.54842 * 333.15832 * 7 6 5 38 38 H 1.08995 * 109.54880 * 212.88681 * 7 6 5 39 39 H 1.09004 * 109.01804 * 162.00079 * 8 7 6 40 40 H 1.08999 * 108.95858 * 43.13989 * 8 7 6 41 41 H 1.09001 * 109.46919 * 306.04824 * 10 9 8 42 42 H 1.08997 * 109.47363 * 186.05182 * 10 9 8 43 43 H 1.07998 * 119.95933 * 0.03781 * 12 11 10 44 44 H 1.08001 * 120.04168 * 179.97438 * 13 12 11 45 45 H 1.09002 * 109.46279 * 269.99761 * 16 15 14 46 46 H 1.08997 * 109.47129 * 29.99822 * 16 15 14 47 47 H 1.08996 * 109.46796 * 150.00126 * 16 15 14 48 48 H 1.08998 * 109.47049 * 149.99610 * 17 15 14 49 49 H 1.09001 * 109.46896 * 29.99881 * 17 15 14 50 50 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 51 51 H 1.07999 * 120.04005 * 179.72250 * 26 14 13 52 52 H 1.08000 * 119.96291 * 180.24718 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8988 1.0256 0.0000 4 6 2.0395 -0.7248 1.2204 5 6 3.3376 -0.0945 1.7533 6 6 4.2951 0.3049 0.6129 7 6 4.3587 -0.7313 -0.4802 8 6 3.3307 -0.3717 -1.5751 9 7 2.0287 -0.7094 -1.1949 10 6 1.0968 -0.5636 -2.3210 11 6 1.4332 -1.5756 -3.3857 12 6 0.8435 -2.8262 -3.3598 13 6 1.1499 -3.7561 -4.3337 14 6 2.0512 -3.4339 -5.3404 15 7 2.3638 -4.3723 -6.3267 16 6 1.7405 -5.6979 -6.3004 17 6 3.3141 -4.0306 -7.3881 18 6 2.5712 -3.4279 -8.5525 19 1 1.4981 -3.3152 -8.5085 20 6 3.2611 -3.0252 -9.6763 21 7 4.5681 -3.1619 -9.7298 22 14 2.3394 -2.2852 -11.1228 23 1 2.2515 -0.8127 -10.9528 24 1 3.0631 -2.5958 -12.3819 25 1 0.9712 -2.8591 -11.1838 26 6 2.6453 -2.1784 -5.3609 27 6 2.3304 -1.2514 -4.3868 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3633 0.5246 0.8837 30 1 -0.3634 0.5029 -0.8962 31 1 2.2297 -1.7665 0.9621 32 1 1.2787 -0.6851 2.0000 33 1 3.8393 -0.8117 2.4028 34 1 3.0870 0.7937 2.3332 35 1 5.2947 0.4440 1.0248 36 1 3.9566 1.2483 0.1847 37 1 4.1233 -1.7122 -0.0671 38 1 5.3598 -0.7463 -0.9108 39 1 3.5839 -0.9076 -2.4899 40 1 3.3780 0.7002 -1.7670 41 1 1.1816 0.4412 -2.7349 42 1 0.0772 -0.7280 -1.9725 43 1 0.1425 -3.0757 -2.5771 44 1 0.6894 -4.7328 -4.3126 45 1 2.3585 -6.3782 -5.7145 46 1 0.7512 -5.6253 -5.8488 47 1 1.6484 -6.0762 -7.3185 48 1 3.8330 -4.9316 -7.7151 49 1 4.0395 -3.3111 -7.0083 50 1 5.0534 -2.8782 -10.5203 51 1 3.3498 -1.9263 -6.1396 52 1 2.7889 -0.2737 -4.4044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769416843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:07 Heat of formation + Delta-G solvation = 20.363621 kcal Electronic energy + Delta-G solvation = -27070.421326 eV Core-core repulsion = 23647.936396 eV Total energy + Delta-G solvation = -3422.484931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10042 -40.00537 -37.41387 -35.53954 -34.71147 -34.16037 -31.88140 -31.45304 -29.63291 -29.04678 -28.13041 -26.53679 -25.31010 -24.24222 -23.64747 -22.90287 -21.40657 -20.79097 -20.06579 -18.64077 -18.09894 -17.11070 -16.92753 -16.68011 -16.39667 -15.92512 -15.58623 -15.42288 -15.31969 -14.88239 -14.65783 -14.49622 -14.29033 -14.07920 -14.01871 -13.57056 -13.20534 -13.17490 -13.14480 -13.09462 -12.99087 -12.67310 -12.54863 -12.50858 -12.37424 -12.16114 -12.08833 -11.77652 -11.62365 -11.51611 -11.43817 -11.30760 -11.21073 -11.04891 -10.65113 -10.35723 -9.63281 -8.98665 -8.36238 -7.78293 -6.38235 0.71893 0.86739 1.36179 1.36986 1.47883 2.33680 2.64524 2.92171 3.05399 3.36999 3.86067 3.91927 4.03477 4.08969 4.15140 4.22938 4.26943 4.27697 4.40851 4.43634 4.46578 4.57013 4.62929 4.65428 4.72092 4.72405 4.78910 4.87451 4.89592 4.93742 4.98851 5.00487 5.02837 5.08982 5.14671 5.19135 5.20732 5.24743 5.28409 5.34445 5.35611 5.42972 5.52970 5.59750 5.61895 5.69880 5.70894 5.95347 6.06824 6.21356 6.35732 6.50633 6.64444 6.82739 6.95204 7.33697 8.82665 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002837 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.778183 B = 9866.448103 C =10138.068676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 H 0.042 0.958 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.114 4.114 8 C 0.072 3.928 9 N -0.546 5.546 10 C 0.108 3.892 11 C -0.153 4.153 12 C -0.048 4.048 13 C -0.217 4.217 14 C 0.213 3.787 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.962 3.038 23 H -0.275 1.275 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.216 4.216 27 C -0.069 4.069 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.009 0.991 41 H 0.030 0.970 42 H 0.106 0.894 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.008 0.992 49 H 0.009 0.991 50 H 0.267 0.733 51 H 0.092 0.908 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 5.580 23.061 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 H 0.060 0.940 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.058 4.058 9 N -0.271 5.271 10 C -0.018 4.018 11 C -0.155 4.155 12 C -0.067 4.067 13 C -0.239 4.239 14 C 0.108 3.892 15 N -0.341 5.341 16 C -0.044 4.044 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.068 0.932 20 C -0.188 4.188 21 N -0.567 5.567 22 Si 0.787 3.213 23 H -0.201 1.201 24 H -0.202 1.202 25 H -0.193 1.193 26 C -0.239 4.239 27 C -0.088 4.088 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.048 0.952 42 H 0.124 0.876 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.026 0.974 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.004 4.995 22.924 24.485 hybrid contribution 0.395 1.080 -1.800 2.136 sum -6.610 6.075 21.124 22.953 Atomic orbital electron populations 1.22125 0.93543 1.02879 1.02538 1.21371 0.95447 0.95112 0.89629 0.94029 1.21442 0.96936 1.00184 0.96224 1.21901 0.95407 1.00776 0.97140 1.21393 0.99809 0.98189 0.96130 1.21426 0.97875 1.00015 0.95848 1.20978 0.89315 0.96941 0.98566 1.58894 1.01862 1.60788 1.05559 1.21040 0.97695 0.94581 0.88442 1.19545 1.01482 0.96759 0.97760 1.20841 0.97698 0.91708 0.96410 1.20808 1.03471 1.02069 0.97593 1.18195 0.93220 0.89170 0.88623 1.46955 1.47185 1.13026 1.26918 1.21594 0.97949 0.83215 1.01679 1.18751 0.87678 0.94477 0.84524 1.21780 0.93935 1.41083 1.01173 0.93249 1.25799 0.95666 0.96043 1.01247 1.70043 1.07829 1.48354 1.30474 0.85494 0.78708 0.78727 0.78396 1.20068 1.20222 1.19282 1.20717 1.06008 0.94686 1.02443 1.20770 0.96699 0.97776 0.93541 0.91473 0.90704 0.92165 0.91934 0.90548 0.91867 0.91578 0.91771 0.93065 0.91435 0.91911 0.92228 0.97280 0.95200 0.87630 0.84028 0.84961 0.93046 0.90264 0.92557 0.97375 0.97288 0.92390 0.88944 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 7.67 71.98 0.55 -1.55 16 2 C 0.09 1.56 2.47 44.06 0.11 1.67 16 3 H 0.04 0.76 6.66 -2.39 -0.02 0.74 16 4 C -0.11 -1.70 4.98 30.16 0.15 -1.55 16 5 C -0.11 -1.66 5.91 31.27 0.18 -1.47 16 6 C -0.12 -2.00 5.32 30.26 0.16 -1.84 16 7 C -0.11 -2.39 5.65 30.35 0.17 -2.21 16 8 C 0.07 1.73 4.74 88.07 0.42 2.15 16 9 N -0.55 -12.03 3.92 -892.44 -3.50 -15.53 16 10 C 0.11 2.51 4.31 85.56 0.37 2.88 16 11 C -0.15 -4.53 4.86 -19.84 -0.10 -4.62 16 12 C -0.05 -1.38 9.69 22.25 0.22 -1.16 16 13 C -0.22 -7.30 9.21 22.40 0.21 -7.09 16 14 C 0.21 8.87 6.55 38.21 0.25 9.12 16 15 N -0.63 -28.32 2.99 -726.54 -2.17 -30.50 16 16 C 0.10 3.50 10.19 127.77 1.30 4.80 16 17 C 0.27 14.35 4.92 85.63 0.42 14.77 16 18 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 19 H 0.05 2.85 7.81 -2.92 -0.02 2.83 16 20 C 0.01 0.66 5.46 84.66 0.46 1.12 16 21 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 22 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 C -0.22 -9.28 9.21 22.40 0.21 -9.08 16 27 C -0.07 -2.42 7.86 22.25 0.17 -2.24 16 28 H 0.07 0.93 7.95 -2.39 -0.02 0.91 16 29 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.06 0.84 6.38 -2.39 -0.02 0.83 16 31 H 0.06 1.18 7.26 -2.39 -0.02 1.16 16 32 H 0.08 0.95 7.70 -2.39 -0.02 0.93 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.91 6.57 -2.39 -0.02 0.90 16 37 H 0.07 1.51 7.11 -2.38 -0.02 1.49 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.74 5.31 -2.38 -0.01 1.72 16 40 H 0.01 0.23 7.54 -2.39 -0.02 0.21 16 41 H 0.03 0.71 8.05 -2.39 -0.02 0.69 16 42 H 0.11 2.05 5.26 -2.39 -0.01 2.03 16 43 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 2.38 6.20 -2.39 -0.01 2.36 16 47 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 48 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 49 H 0.01 0.53 6.18 -2.39 -0.01 0.52 16 50 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 51 H 0.09 4.60 6.14 -2.91 -0.02 4.58 16 52 H 0.11 3.71 7.90 -2.91 -0.02 3.69 16 Total: -1.00 -63.55 386.94 3.02 -60.53 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.88 Total: 20.72 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 5.50 Total: -26.94 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -5.39 Total: -100.88 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.55 3.02 -60.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769416843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.894 kcal (2) G-P(sol) polarization free energy of solvation -63.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds