Wall clock time and date at job start Tue Mar 31 2020 11:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 108.93892 * 2 1 4 4 C 1.54425 * 109.02493 * 241.13722 * 2 1 3 5 5 C 1.50751 * 109.02449 * 162.00223 * 4 2 1 6 6 C 1.54173 * 112.60923 * 93.01453 * 5 4 2 7 7 C 1.53866 * 112.00527 * 318.45355 * 6 5 4 8 8 C 1.50817 * 111.59280 * 319.11758 * 7 6 5 9 9 N 1.39782 * 109.01914 * 118.86319 * 2 1 3 10 10 C 1.46894 * 111.00477 * 309.72404 * 9 2 1 11 11 C 1.50701 * 109.47295 * 162.96254 * 10 9 2 12 12 C 1.38279 * 119.92625 * 269.73502 * 11 10 9 13 13 C 1.38105 * 120.07422 * 179.72661 * 12 11 10 14 14 C 1.38915 * 119.92214 * 0.53903 * 13 12 11 15 15 N 1.39680 * 120.07118 * 179.75294 * 14 13 12 16 16 C 1.46497 * 119.99616 * 179.97438 * 15 14 13 17 17 C 1.46491 * 120.00194 * 359.97438 * 15 14 13 18 18 C 1.50704 * 109.47074 * 89.99959 * 17 15 14 19 19 H 1.07993 * 119.99943 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99694 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00231 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99576 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46715 * 90.00580 * 22 20 18 24 24 H 1.48499 * 109.47422 * 210.00076 * 22 20 18 25 25 H 1.48498 * 109.47297 * 330.00687 * 22 20 18 26 26 C 1.38904 * 119.85153 * 359.73101 * 14 13 12 27 27 C 1.38109 * 119.92455 * 359.97438 * 26 14 13 28 28 H 1.08998 * 109.47896 * 310.36420 * 1 2 3 29 29 H 1.09004 * 109.46952 * 70.36981 * 1 2 3 30 30 H 1.09007 * 109.46807 * 190.36350 * 1 2 3 31 31 H 1.09006 * 109.54036 * 281.86325 * 4 2 1 32 32 H 1.08995 * 109.54923 * 42.04262 * 4 2 1 33 33 H 1.09004 * 108.85364 * 213.81869 * 5 4 2 34 34 H 1.08995 * 108.85662 * 332.20767 * 5 4 2 35 35 H 1.09004 * 108.98014 * 79.12789 * 6 5 4 36 36 H 1.09003 * 108.98024 * 197.84181 * 6 5 4 37 37 H 1.08997 * 109.12975 * 198.52856 * 7 6 5 38 38 H 1.08999 * 108.99719 * 79.61264 * 7 6 5 39 39 H 1.08996 * 109.75072 * 335.33163 * 8 7 6 40 40 H 1.09000 * 109.74107 * 214.66307 * 8 7 6 41 41 H 1.08998 * 109.47281 * 282.97016 * 10 9 2 42 42 H 1.09000 * 109.46830 * 42.96603 * 10 9 2 43 43 H 1.07998 * 119.96292 * 359.97215 * 12 11 10 44 44 H 1.08005 * 120.04018 * 180.27169 * 13 12 11 45 45 H 1.09001 * 109.47294 * 89.99768 * 16 15 14 46 46 H 1.09001 * 109.47111 * 209.99954 * 16 15 14 47 47 H 1.09006 * 109.47082 * 329.99519 * 16 15 14 48 48 H 1.09003 * 109.47546 * 210.00084 * 17 15 14 49 49 H 1.09004 * 109.47340 * 329.99970 * 17 15 14 50 50 H 0.97007 * 120.00000 * 179.97438 * 21 20 18 51 51 H 1.08003 * 120.03727 * 179.97438 * 26 14 13 52 52 H 1.07999 * 119.96185 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0311 0.0000 4 6 2.0334 -0.7047 -1.2785 5 6 3.4749 -0.3300 -1.5110 6 6 4.4580 -1.3400 -0.8861 7 6 4.0035 -1.7983 0.5106 8 6 3.4529 -0.6507 1.3195 9 7 1.9855 -0.6379 1.1573 10 6 1.3285 -0.0924 2.3526 11 6 1.5086 -1.0470 3.5047 12 6 0.5722 -2.0387 3.7317 13 6 0.7371 -2.9187 4.7832 14 6 1.8395 -2.7996 5.6201 15 7 2.0067 -3.6847 6.6876 16 6 3.1702 -3.5580 7.5687 17 6 1.0186 -4.7397 6.9261 18 6 1.4136 -5.9791 6.1653 19 1 2.3110 -5.9810 5.5646 20 6 0.6296 -7.1111 6.2370 21 7 -0.4630 -7.1090 6.9690 22 14 1.1188 -8.6473 5.2933 23 1 1.9880 -9.4967 6.1468 24 1 -0.1006 -9.4070 4.9179 25 1 1.8580 -8.2594 4.0652 26 6 2.7753 -1.7987 5.3925 27 6 2.6074 -0.9259 4.3354 28 1 -0.3635 0.6655 0.7830 29 1 -0.3633 0.3453 -0.9680 30 1 -0.3633 -1.0110 0.1849 31 1 1.9526 -1.7848 -1.1554 32 1 1.4311 -0.3888 -2.1303 33 1 3.6570 -0.2793 -2.5845 34 1 3.6576 0.6534 -1.0779 35 1 4.5340 -2.2104 -1.5378 36 1 5.4400 -0.8741 -0.8034 37 1 4.8533 -2.2305 1.0388 38 1 3.2305 -2.5589 0.4003 39 1 3.8715 0.2887 0.9584 40 1 3.7060 -0.7865 2.3709 41 1 1.7741 0.8699 2.6048 42 1 0.2651 0.0406 2.1538 43 1 -0.2871 -2.1278 3.0836 44 1 0.0076 -3.6959 4.9574 45 1 2.9281 -2.8917 8.3967 46 1 3.4390 -4.5396 7.9590 47 1 4.0091 -3.1485 7.0061 48 1 0.9778 -4.9651 7.9918 49 1 0.0386 -4.4028 6.5882 50 1 -1.0147 -7.9054 7.0191 51 1 3.6333 -1.7032 6.0415 52 1 3.3349 -0.1477 4.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769416846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:11 Heat of formation + Delta-G solvation = 34.488352 kcal Electronic energy + Delta-G solvation = -27249.757382 eV Core-core repulsion = 23827.884945 eV Total energy + Delta-G solvation = -3421.872436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05973 -38.68059 -35.94799 -34.65227 -33.06949 -32.60903 -30.40895 -30.11179 -28.25381 -27.80928 -26.98317 -25.26818 -23.85396 -23.32298 -22.07624 -21.49325 -20.14479 -19.57377 -19.37005 -16.63215 -16.43923 -16.25829 -15.74638 -15.20188 -14.99390 -14.76530 -14.34448 -14.10371 -13.98102 -13.68163 -13.38142 -13.26140 -12.95015 -12.82354 -12.80134 -12.38024 -12.13069 -12.07153 -11.78809 -11.75972 -11.39022 -11.31221 -11.24496 -11.15120 -10.93604 -10.72321 -10.65219 -10.54568 -10.46729 -10.38047 -10.28756 -10.18211 -9.85067 -9.70815 -8.77488 -8.48920 -8.20849 -8.02812 -6.42864 -5.99190 -4.15460 2.15275 2.27378 3.27538 3.34449 3.39570 4.00720 4.18881 4.43342 4.60250 4.64630 4.79495 4.80275 5.04572 5.10663 5.23212 5.23452 5.28795 5.31875 5.39388 5.51013 5.58223 5.60131 5.63984 5.65640 5.75666 5.76464 5.82410 5.84720 5.95154 5.96078 6.05409 6.07577 6.09992 6.12461 6.14128 6.23529 6.30422 6.36528 6.43726 6.48262 6.49996 6.67869 6.98473 7.06259 7.20409 7.27733 7.31800 7.42950 7.60215 7.66844 7.83086 8.17779 8.30010 8.52600 8.93806 9.51392 10.97364 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003345 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.617873 B = 8367.658917 C = 9000.225039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.118 4.118 8 C 0.064 3.936 9 N -0.544 5.544 10 C 0.106 3.894 11 C -0.161 4.161 12 C -0.052 4.052 13 C -0.187 4.187 14 C 0.240 3.760 15 N -0.617 5.617 16 C 0.099 3.901 17 C 0.250 3.750 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.221 4.221 27 C -0.070 4.070 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.030 0.970 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.130 0.870 45 H 0.034 0.966 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.111 0.889 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 15.596 -12.352 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.006 4.006 3 H 0.037 0.963 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.063 4.063 9 N -0.269 5.269 10 C -0.020 4.020 11 C -0.164 4.164 12 C -0.072 4.072 13 C -0.209 4.209 14 C 0.133 3.867 15 N -0.322 5.322 16 C -0.045 4.045 17 C 0.130 3.870 18 C -0.569 4.569 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.245 4.245 27 C -0.090 4.090 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.148 0.852 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.129 0.871 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.719 14.877 -12.171 20.053 hybrid contribution 0.576 -0.265 -0.405 0.753 sum 6.295 14.611 -12.575 20.279 Atomic orbital electron populations 1.22135 0.94912 1.02886 1.01234 1.20404 0.95040 0.94496 0.90654 0.96348 1.21538 0.95320 1.02059 0.96203 1.21390 0.95224 0.99103 0.99928 1.21934 0.98080 0.98676 0.96776 1.21394 1.00860 0.98894 0.94411 1.21851 0.86188 0.97123 1.01090 1.58827 1.07171 1.59124 1.01760 1.20979 0.99417 0.93795 0.87801 1.19158 0.97875 1.00805 0.98590 1.20595 0.97683 0.93259 0.95649 1.20885 0.99725 1.02665 0.97673 1.17932 0.92870 0.88400 0.87459 1.47077 1.25355 1.31992 1.27823 1.21457 0.88505 1.01346 0.93204 1.19269 0.87075 0.83967 0.96711 1.21587 1.09536 0.96648 1.29150 0.92268 1.24955 0.94827 0.98825 0.95430 1.69931 1.14291 1.29437 1.39798 0.86536 0.78040 0.82802 0.80351 1.20655 1.21079 1.19764 1.20505 1.01361 0.99928 1.02661 1.20494 0.96254 0.97808 0.94404 0.92447 0.92610 0.91315 0.90541 0.91822 0.92662 0.92716 0.92435 0.92782 0.92186 0.90405 0.94877 0.89844 0.95219 0.89888 0.87227 0.85187 0.94708 0.91526 0.92754 0.95294 0.94638 0.92674 0.87083 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.25 37.16 0.31 -1.19 16 2 C 0.10 1.11 2.06 -70.64 -0.15 0.96 16 3 H 0.02 0.20 7.54 -51.92 -0.39 -0.19 16 4 C -0.11 -1.11 5.00 -27.11 -0.14 -1.25 16 5 C -0.12 -1.09 5.31 -27.25 -0.14 -1.24 16 6 C -0.12 -1.14 5.91 -25.67 -0.15 -1.29 16 7 C -0.12 -1.37 5.41 -27.37 -0.15 -1.52 16 8 C 0.06 0.76 5.15 -4.51 -0.02 0.74 16 9 N -0.54 -6.70 3.76 -233.11 -0.88 -7.57 16 10 C 0.11 1.35 4.82 -4.98 -0.02 1.32 16 11 C -0.16 -2.49 5.06 -104.59 -0.53 -3.02 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.19 -3.81 9.21 -39.38 -0.36 -4.18 16 14 C 0.24 4.89 6.55 -83.79 -0.55 4.34 16 15 N -0.62 -13.30 2.99 -181.00 -0.54 -13.84 16 16 C 0.10 1.75 10.19 59.85 0.61 2.36 16 17 C 0.25 6.30 4.91 -5.20 -0.03 6.27 16 18 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 22 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.22 -3.86 9.21 -39.38 -0.36 -4.22 16 27 C -0.07 -1.09 8.03 -39.61 -0.32 -1.41 16 28 H 0.06 0.54 6.35 -51.93 -0.33 0.21 16 29 H 0.05 0.46 7.89 -51.93 -0.41 0.05 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.86 7.11 -51.93 -0.37 0.49 16 32 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.51 6.58 -51.93 -0.34 0.17 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.05 7.27 -51.93 -0.38 0.67 16 39 H 0.03 0.37 6.66 -51.93 -0.35 0.03 16 40 H 0.08 1.08 4.79 -51.93 -0.25 0.83 16 41 H 0.03 0.36 8.04 -51.93 -0.42 -0.06 16 42 H 0.08 0.99 5.16 -51.93 -0.27 0.73 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.13 2.94 6.14 -52.48 -0.32 2.61 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 47 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 48 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.04 0.95 6.20 -51.93 -0.32 0.62 16 50 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 51 H 0.11 1.75 6.14 -52.48 -0.32 1.43 16 52 H 0.10 1.37 7.30 -52.49 -0.38 0.98 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -28.43 386.90 -11.60 -40.03 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.92 Total: 2.03 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.81 Total: -17.89 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.68 Total: -46.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.43 -11.60 -40.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769416846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.520 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds