Wall clock time and date at job start Tue Mar 31 2020 11:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 108.93892 * 2 1 4 4 C 1.54425 * 109.02493 * 241.13722 * 2 1 3 5 5 C 1.50751 * 109.02449 * 162.00223 * 4 2 1 6 6 C 1.54173 * 112.60923 * 93.01453 * 5 4 2 7 7 C 1.53866 * 112.00527 * 318.45355 * 6 5 4 8 8 C 1.50817 * 111.59280 * 319.11758 * 7 6 5 9 9 N 1.39782 * 109.01914 * 118.86319 * 2 1 3 10 10 C 1.46894 * 111.00477 * 309.72404 * 9 2 1 11 11 C 1.50701 * 109.47295 * 162.96254 * 10 9 2 12 12 C 1.38279 * 119.92625 * 269.73502 * 11 10 9 13 13 C 1.38105 * 120.07422 * 179.72661 * 12 11 10 14 14 C 1.38915 * 119.92214 * 0.53903 * 13 12 11 15 15 N 1.39680 * 120.07118 * 179.75294 * 14 13 12 16 16 C 1.46497 * 119.99616 * 179.97438 * 15 14 13 17 17 C 1.46491 * 120.00194 * 359.97438 * 15 14 13 18 18 C 1.50704 * 109.47074 * 89.99959 * 17 15 14 19 19 H 1.07993 * 119.99943 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99694 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00231 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99576 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46715 * 90.00580 * 22 20 18 24 24 H 1.48499 * 109.47422 * 210.00076 * 22 20 18 25 25 H 1.48498 * 109.47297 * 330.00687 * 22 20 18 26 26 C 1.38904 * 119.85153 * 359.73101 * 14 13 12 27 27 C 1.38109 * 119.92455 * 359.97438 * 26 14 13 28 28 H 1.08998 * 109.47896 * 310.36420 * 1 2 3 29 29 H 1.09004 * 109.46952 * 70.36981 * 1 2 3 30 30 H 1.09007 * 109.46807 * 190.36350 * 1 2 3 31 31 H 1.09006 * 109.54036 * 281.86325 * 4 2 1 32 32 H 1.08995 * 109.54923 * 42.04262 * 4 2 1 33 33 H 1.09004 * 108.85364 * 213.81869 * 5 4 2 34 34 H 1.08995 * 108.85662 * 332.20767 * 5 4 2 35 35 H 1.09004 * 108.98014 * 79.12789 * 6 5 4 36 36 H 1.09003 * 108.98024 * 197.84181 * 6 5 4 37 37 H 1.08997 * 109.12975 * 198.52856 * 7 6 5 38 38 H 1.08999 * 108.99719 * 79.61264 * 7 6 5 39 39 H 1.08996 * 109.75072 * 335.33163 * 8 7 6 40 40 H 1.09000 * 109.74107 * 214.66307 * 8 7 6 41 41 H 1.08998 * 109.47281 * 282.97016 * 10 9 2 42 42 H 1.09000 * 109.46830 * 42.96603 * 10 9 2 43 43 H 1.07998 * 119.96292 * 359.97215 * 12 11 10 44 44 H 1.08005 * 120.04018 * 180.27169 * 13 12 11 45 45 H 1.09001 * 109.47294 * 89.99768 * 16 15 14 46 46 H 1.09001 * 109.47111 * 209.99954 * 16 15 14 47 47 H 1.09006 * 109.47082 * 329.99519 * 16 15 14 48 48 H 1.09003 * 109.47546 * 210.00084 * 17 15 14 49 49 H 1.09004 * 109.47340 * 329.99970 * 17 15 14 50 50 H 0.97007 * 120.00000 * 179.97438 * 21 20 18 51 51 H 1.08003 * 120.03727 * 179.97438 * 26 14 13 52 52 H 1.07999 * 119.96185 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0311 0.0000 4 6 2.0334 -0.7047 -1.2785 5 6 3.4749 -0.3300 -1.5110 6 6 4.4580 -1.3400 -0.8861 7 6 4.0035 -1.7983 0.5106 8 6 3.4529 -0.6507 1.3195 9 7 1.9855 -0.6379 1.1573 10 6 1.3285 -0.0924 2.3526 11 6 1.5086 -1.0470 3.5047 12 6 0.5722 -2.0387 3.7317 13 6 0.7371 -2.9187 4.7832 14 6 1.8395 -2.7996 5.6201 15 7 2.0067 -3.6847 6.6876 16 6 3.1702 -3.5580 7.5687 17 6 1.0186 -4.7397 6.9261 18 6 1.4136 -5.9791 6.1653 19 1 2.3110 -5.9810 5.5646 20 6 0.6296 -7.1111 6.2370 21 7 -0.4630 -7.1090 6.9690 22 14 1.1188 -8.6473 5.2933 23 1 1.9880 -9.4967 6.1468 24 1 -0.1006 -9.4070 4.9179 25 1 1.8580 -8.2594 4.0652 26 6 2.7753 -1.7987 5.3925 27 6 2.6074 -0.9259 4.3354 28 1 -0.3635 0.6655 0.7830 29 1 -0.3633 0.3453 -0.9680 30 1 -0.3633 -1.0110 0.1849 31 1 1.9526 -1.7848 -1.1554 32 1 1.4311 -0.3888 -2.1303 33 1 3.6570 -0.2793 -2.5845 34 1 3.6576 0.6534 -1.0779 35 1 4.5340 -2.2104 -1.5378 36 1 5.4400 -0.8741 -0.8034 37 1 4.8533 -2.2305 1.0388 38 1 3.2305 -2.5589 0.4003 39 1 3.8715 0.2887 0.9584 40 1 3.7060 -0.7865 2.3709 41 1 1.7741 0.8699 2.6048 42 1 0.2651 0.0406 2.1538 43 1 -0.2871 -2.1278 3.0836 44 1 0.0076 -3.6959 4.9574 45 1 2.9281 -2.8917 8.3967 46 1 3.4390 -4.5396 7.9590 47 1 4.0091 -3.1485 7.0061 48 1 0.9778 -4.9651 7.9918 49 1 0.0386 -4.4028 6.5882 50 1 -1.0147 -7.9054 7.0191 51 1 3.6333 -1.7032 6.0415 52 1 3.3349 -0.1477 4.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769416846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:10 Heat of formation + Delta-G solvation = 21.400592 kcal Electronic energy + Delta-G solvation = -27250.324909 eV Core-core repulsion = 23827.884945 eV Total energy + Delta-G solvation = -3422.439964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07180 -40.01328 -37.38590 -35.66311 -34.74670 -33.87534 -31.87422 -31.38404 -29.64403 -29.09756 -28.06465 -26.69887 -25.33085 -24.24886 -23.51339 -22.94341 -21.15704 -20.85583 -20.24708 -18.63204 -18.07970 -17.19146 -16.84822 -16.73148 -16.11361 -16.08024 -15.58618 -15.38132 -15.32238 -14.83912 -14.63403 -14.48562 -14.30728 -14.04691 -13.86536 -13.78931 -13.31078 -13.16949 -13.15805 -13.00234 -12.90642 -12.68263 -12.61552 -12.52711 -12.30252 -12.16862 -12.10736 -11.75062 -11.62792 -11.51298 -11.39032 -11.26228 -11.19936 -11.06933 -10.63862 -10.33629 -9.61618 -8.95236 -8.35444 -7.77311 -6.37099 0.73669 0.88111 1.35983 1.37542 1.48605 2.34445 2.65395 2.95294 3.06328 3.37453 3.83296 3.96368 4.01003 4.08897 4.14819 4.23728 4.27708 4.31436 4.40829 4.45143 4.49187 4.54678 4.65411 4.69212 4.72145 4.74114 4.78596 4.86371 4.89683 4.93071 4.97599 5.01206 5.02876 5.08637 5.15373 5.17987 5.22205 5.26487 5.31037 5.35064 5.37566 5.40219 5.55214 5.61010 5.61437 5.70239 5.71697 5.97744 6.07917 6.23114 6.35797 6.51715 6.72494 6.83848 6.96442 7.34815 8.83448 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003345 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.617873 B = 8367.658917 C = 9000.225039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 H 0.026 0.974 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.116 4.116 8 C 0.066 3.934 9 N -0.556 5.556 10 C 0.109 3.891 11 C -0.147 4.147 12 C -0.056 4.056 13 C -0.216 4.216 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.099 3.901 17 C 0.268 3.732 18 C -0.541 4.541 19 H 0.048 0.952 20 C 0.013 3.987 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.274 1.274 26 C -0.216 4.216 27 C -0.063 4.063 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.132 0.868 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.684 17.593 -14.319 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 H 0.043 0.957 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.061 4.061 9 N -0.281 5.281 10 C -0.017 4.017 11 C -0.150 4.150 12 C -0.075 4.075 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.341 5.341 16 C -0.044 4.044 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.066 0.934 20 C -0.186 4.186 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.199 1.199 26 C -0.239 4.239 27 C -0.082 4.082 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.149 0.851 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.439 16.906 -14.151 23.268 hybrid contribution 0.039 -0.780 0.127 0.791 sum 7.479 16.126 -14.024 22.642 Atomic orbital electron populations 1.22116 0.94409 1.02068 1.02357 1.20477 0.95463 0.94659 0.90147 0.95672 1.21526 0.96165 1.00799 0.96390 1.21373 0.94459 0.98812 1.00740 1.21906 0.98757 0.99011 0.95487 1.21357 0.99953 0.98320 0.95762 1.21834 0.86051 0.97679 1.00518 1.58766 1.07429 1.59835 1.02102 1.20962 1.00339 0.93412 0.86959 1.19500 0.96706 0.99842 0.98982 1.20733 0.98711 0.93266 0.94835 1.20768 0.99953 1.03322 0.99809 1.18192 0.93957 0.89546 0.87605 1.46943 1.25896 1.31889 1.29386 1.21587 0.87958 1.01368 0.93503 1.18745 0.87246 0.84600 0.94799 1.21777 1.09144 0.97865 1.29196 0.93405 1.25764 0.94722 1.01860 0.96242 1.70035 1.15204 1.30412 1.40967 0.85525 0.77954 0.79101 0.78927 1.19470 1.20325 1.19853 1.20756 1.00961 0.98886 1.03261 1.20878 0.96522 0.97707 0.93072 0.92008 0.91023 0.92904 0.92393 0.90364 0.91352 0.92415 0.92456 0.91686 0.92471 0.92869 0.93543 0.90779 0.93575 0.89083 0.86308 0.88926 0.92962 0.92615 0.90395 0.97341 0.97195 0.92383 0.85068 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.25 71.98 0.59 -2.03 16 2 C 0.10 1.91 2.06 46.68 0.10 2.01 16 3 H 0.03 0.46 7.54 -2.38 -0.02 0.44 16 4 C -0.11 -1.92 5.00 30.35 0.15 -1.77 16 5 C -0.12 -1.81 5.31 30.26 0.16 -1.65 16 6 C -0.11 -1.97 5.91 31.28 0.18 -1.79 16 7 C -0.12 -2.54 5.41 30.18 0.16 -2.37 16 8 C 0.07 1.40 5.15 85.45 0.44 1.84 16 9 N -0.56 -12.46 3.76 -891.44 -3.35 -15.81 16 10 C 0.11 2.49 4.82 85.56 0.41 2.90 16 11 C -0.15 -4.31 5.06 -19.84 -0.10 -4.41 16 12 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 13 C -0.22 -9.27 9.21 22.40 0.21 -9.06 16 14 C 0.21 8.79 6.55 38.21 0.25 9.04 16 15 N -0.63 -28.25 2.99 -726.56 -2.17 -30.43 16 16 C 0.10 3.49 10.19 127.77 1.30 4.79 16 17 C 0.27 14.34 4.91 85.64 0.42 14.77 16 18 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.01 0.76 5.46 84.66 0.46 1.22 16 21 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 22 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 26 C -0.22 -7.19 9.21 22.40 0.21 -6.98 16 27 C -0.06 -1.78 8.03 22.25 0.18 -1.60 16 28 H 0.06 1.00 6.35 -2.39 -0.02 0.99 16 29 H 0.07 1.00 7.89 -2.38 -0.02 0.98 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.06 1.23 7.11 -2.38 -0.02 1.22 16 32 H 0.08 1.13 7.85 -2.39 -0.02 1.11 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.88 6.58 -2.39 -0.02 0.87 16 35 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.42 7.27 -2.39 -0.02 1.40 16 39 H 0.05 0.88 6.66 -2.39 -0.02 0.86 16 40 H 0.07 1.70 4.79 -2.39 -0.01 1.69 16 41 H 0.05 0.93 8.04 -2.39 -0.02 0.91 16 42 H 0.09 1.96 5.16 -2.39 -0.01 1.94 16 43 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 44 H 0.09 4.60 6.14 -2.91 -0.02 4.58 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 47 H 0.08 2.34 6.20 -2.38 -0.01 2.32 16 48 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 49 H 0.01 0.58 6.20 -2.38 -0.01 0.57 16 50 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 51 H 0.13 3.79 6.14 -2.91 -0.02 3.77 16 52 H 0.14 3.03 7.30 -2.91 -0.02 3.01 16 Total: -1.00 -63.65 386.90 3.26 -60.39 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.88 Total: 21.39 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 5.59 Total: -27.62 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -5.24 Total: -101.03 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.65 3.26 -60.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769416846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.794 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds