Wall clock time and date at job start Tue Mar 31 2020 11:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 H 1.09002 * 110.06502 * 301.21511 * 3 2 1 5 5 C 1.53994 * 109.91410 * 180.02562 * 3 2 1 6 6 C 1.54601 * 105.14016 * 239.41823 * 5 3 2 7 7 H 1.09001 * 110.72046 * 96.40131 * 6 5 3 8 8 C 1.52994 * 110.72327 * 219.68574 * 6 5 3 9 9 C 1.54937 * 102.91984 * 338.04471 * 6 5 3 10 10 N 1.47899 * 109.92059 * 62.42559 * 3 2 1 11 11 C 1.46904 * 110.99712 * 265.19778 * 10 3 2 12 12 C 1.50700 * 109.47108 * 306.13049 * 11 10 3 13 13 C 1.38287 * 119.92524 * 89.99981 * 12 11 10 14 14 C 1.38112 * 120.07087 * 180.02562 * 13 12 11 15 15 C 1.38902 * 119.92568 * 359.97438 * 14 13 12 16 16 N 1.39681 * 120.07196 * 179.97438 * 15 14 13 17 17 C 1.46494 * 119.99983 * 359.97438 * 16 15 14 18 18 C 1.46501 * 120.00030 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.46592 * 269.99742 * 18 16 15 20 20 H 1.08003 * 120.00449 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99632 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99606 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00379 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47080 * 269.99811 * 23 21 19 25 25 H 1.48503 * 109.47017 * 29.99590 * 23 21 19 26 26 H 1.48497 * 109.47115 * 149.99582 * 23 21 19 27 27 C 1.38910 * 119.85170 * 0.25755 * 15 14 13 28 28 C 1.38102 * 119.92630 * 359.48701 * 27 15 14 29 29 H 1.09000 * 109.47176 * 53.40783 * 1 2 3 30 30 H 1.08998 * 109.47433 * 173.40737 * 1 2 3 31 31 H 1.08998 * 109.47032 * 293.40983 * 1 2 3 32 32 H 1.08998 * 109.47182 * 239.99834 * 2 1 3 33 33 H 1.09004 * 109.46951 * 119.99546 * 2 1 3 34 34 H 1.09006 * 110.30475 * 120.50773 * 5 3 2 35 35 H 1.08999 * 110.39927 * 358.38043 * 5 3 2 36 36 H 1.09001 * 109.47075 * 174.95610 * 8 6 5 37 37 H 1.08999 * 109.47374 * 294.95489 * 8 6 5 38 38 H 1.09004 * 109.47342 * 54.95614 * 8 6 5 39 39 H 1.09003 * 110.66637 * 278.97826 * 9 6 5 40 40 H 1.08997 * 110.80817 * 155.90984 * 9 6 5 41 41 H 1.08994 * 109.46993 * 186.13306 * 11 10 3 42 42 H 1.09002 * 109.47247 * 66.12826 * 11 10 3 43 43 H 1.07993 * 119.96419 * 0.04415 * 13 12 11 44 44 H 1.08002 * 120.03394 * 179.97438 * 14 13 12 45 45 H 1.08993 * 109.47801 * 270.00390 * 17 16 15 46 46 H 1.09003 * 109.47148 * 30.00723 * 17 16 15 47 47 H 1.09005 * 109.47096 * 149.99926 * 17 16 15 48 48 H 1.08989 * 109.47295 * 149.99775 * 18 16 15 49 49 H 1.09001 * 109.46797 * 29.99201 * 18 16 15 50 50 H 0.97000 * 119.99764 * 180.02562 * 22 21 19 51 51 H 1.08011 * 120.03585 * 179.72600 * 27 15 14 52 52 H 1.07997 * 119.96252 * 180.24947 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6643 1.9720 -0.8756 5 6 3.5799 1.4545 -0.0006 6 6 3.9783 2.2166 1.2841 7 1 4.1945 1.5202 2.0943 8 6 5.1755 3.1322 1.0211 9 6 2.7104 3.0491 1.6003 10 7 1.6011 2.1322 1.2325 11 6 0.3558 2.8772 1.0039 12 6 0.5323 3.8017 -0.1730 13 6 0.2311 3.3601 -1.4484 14 6 0.3923 4.2047 -2.5292 15 6 0.8571 5.4990 -2.3340 16 7 1.0217 6.3556 -3.4250 17 6 0.7047 5.8890 -4.7770 18 6 1.5126 7.7202 -3.2173 19 6 0.3446 8.6448 -2.9893 20 1 -0.6626 8.2548 -2.9977 21 6 0.5618 9.9884 -2.7688 22 7 -0.4576 10.7953 -2.5703 23 14 2.3037 10.6628 -2.7534 24 1 2.8457 10.6026 -1.3722 25 1 3.1574 9.8493 -3.6560 26 1 2.2928 12.0726 -3.2199 27 6 1.1633 5.9377 -1.0521 28 6 0.9948 5.0898 0.0249 29 1 -0.3633 0.6126 -0.8251 30 1 -0.3634 -1.0208 -0.1180 31 1 -0.3633 0.4083 0.9431 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9537 1.9765 -0.8815 35 1 3.9677 0.4362 0.0279 36 1 5.3826 3.7245 1.9124 37 1 6.0485 2.5274 0.7759 38 1 4.9484 3.7970 0.1877 39 1 2.6811 3.9521 0.9905 40 1 2.6665 3.3004 2.6600 41 1 0.1137 3.4614 1.8917 42 1 -0.4538 2.1771 0.7977 43 1 -0.1309 2.3539 -1.5994 44 1 0.1572 3.8591 -3.5251 45 1 1.5927 5.4435 -5.2252 46 1 -0.0898 5.1444 -4.7274 47 1 0.3750 6.7320 -5.3843 48 1 2.0665 8.0450 -4.0979 49 1 2.1684 7.7419 -2.3470 50 1 -0.3048 11.7406 -2.4155 51 1 1.5291 6.9421 -0.8973 52 1 1.2289 5.4316 1.0223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769446921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:33 Heat of formation + Delta-G solvation = 33.224289 kcal Electronic energy + Delta-G solvation = -27704.360847 eV Core-core repulsion = 24282.433597 eV Total energy + Delta-G solvation = -3421.927250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24187 -38.55124 -35.92308 -34.04195 -33.08445 -32.48534 -30.65186 -29.81861 -28.79674 -28.25849 -26.59057 -25.09846 -24.20026 -23.03856 -21.80386 -21.68949 -20.27158 -19.77867 -19.50543 -16.98450 -16.72446 -15.92790 -15.72423 -15.36898 -15.04870 -14.59827 -14.30989 -13.95113 -13.82261 -13.61501 -13.32196 -13.18350 -13.07044 -12.91654 -12.63144 -12.47740 -12.39337 -12.21301 -12.03719 -11.74657 -11.68846 -11.49287 -11.43299 -11.22502 -11.08086 -10.89730 -10.69989 -10.64968 -10.51439 -10.43295 -10.37194 -10.26861 -10.06937 -9.62459 -8.92908 -8.69769 -8.36107 -8.24097 -6.47711 -6.18403 -4.18740 1.95923 2.10351 3.18124 3.26039 3.26778 3.97931 4.11238 4.28451 4.41405 4.57894 4.68339 4.93307 5.00079 5.11698 5.17128 5.23403 5.31288 5.33820 5.41546 5.44667 5.50816 5.60698 5.61298 5.66122 5.71368 5.76346 5.82307 5.88018 5.90931 5.92770 5.95433 5.98721 6.01691 6.10601 6.11668 6.17633 6.20570 6.24084 6.30848 6.35119 6.39035 6.49655 6.67797 6.69151 6.90995 6.95515 7.01231 7.19556 7.21098 7.44349 7.49163 7.98398 8.27449 8.46623 8.88912 9.41232 10.94629 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003603 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.611614 B = 7769.025714 C = 8425.169801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C 0.049 3.951 4 H 0.078 0.922 5 C -0.122 4.122 6 C -0.094 4.094 7 H 0.076 0.924 8 C -0.144 4.144 9 C 0.029 3.971 10 N -0.502 5.502 11 C 0.088 3.912 12 C -0.203 4.203 13 C -0.064 4.064 14 C -0.218 4.218 15 C 0.243 3.757 16 N -0.610 5.610 17 C 0.098 3.902 18 C 0.221 3.779 19 C -0.536 4.536 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.872 3.128 24 H -0.273 1.273 25 H -0.266 1.266 26 H -0.283 1.283 27 C -0.187 4.187 28 C -0.062 4.062 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.036 0.964 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.265 0.735 51 H 0.128 0.872 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -19.523 5.099 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.060 4.060 4 H 0.095 0.905 5 C -0.160 4.160 6 C -0.113 4.113 7 H 0.094 0.906 8 C -0.202 4.202 9 C -0.099 4.099 10 N -0.224 5.224 11 C -0.039 4.039 12 C -0.206 4.206 13 C -0.083 4.083 14 C -0.241 4.241 15 C 0.136 3.864 16 N -0.316 5.316 17 C -0.046 4.046 18 C 0.100 3.900 19 C -0.574 4.574 20 H 0.094 0.906 21 C -0.130 4.130 22 N -0.532 5.532 23 Si 0.699 3.301 24 H -0.199 1.199 25 H -0.190 1.190 26 H -0.209 1.209 27 C -0.210 4.210 28 C -0.081 4.081 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.044 0.956 50 H 0.075 0.925 51 H 0.145 0.855 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.780 -19.549 5.365 21.376 hybrid contribution 0.839 1.323 -0.717 1.723 sum 7.619 -18.227 4.648 20.294 Atomic orbital electron populations 1.21906 0.96161 1.00834 1.02185 1.21481 0.95937 0.95590 1.01189 1.22675 0.94141 0.95269 0.93882 0.90469 1.22513 0.95206 1.00416 0.97849 1.22003 0.94590 0.97041 0.97623 0.90564 1.21779 0.97302 0.99298 1.01782 1.23425 0.89840 0.95750 1.00883 1.65064 1.02894 1.24728 1.29743 1.21284 0.92988 0.94482 0.95188 1.19970 1.09319 0.95995 0.95363 1.20594 0.97855 0.97921 0.91935 1.20568 1.10730 0.93857 0.98986 1.17906 0.91372 0.89182 0.87947 1.46723 1.68728 1.12725 1.03401 1.21496 0.98937 0.99959 0.84167 1.19655 0.95332 0.78468 0.96570 1.21470 0.94209 0.92074 1.49669 0.90574 1.24899 0.96799 0.96786 0.94490 1.69902 1.30319 1.04648 1.48306 0.86918 0.85342 0.78832 0.79052 1.19892 1.19043 1.20889 1.20823 1.08028 1.01013 0.91098 1.20685 0.97085 0.92682 0.97690 0.93004 0.93477 0.91678 0.92461 0.91834 0.91682 0.91567 0.92631 0.92801 0.92435 0.91928 0.90760 0.90830 0.89927 0.87136 0.86786 0.94536 0.92387 0.91218 0.95442 0.95566 0.92467 0.85466 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.54 37.16 0.32 -1.15 16 2 C -0.10 -1.02 5.42 -26.73 -0.14 -1.17 16 3 C 0.05 0.55 2.41 -66.64 -0.16 0.39 16 4 H 0.08 0.99 4.13 -51.93 -0.21 0.78 16 5 C -0.12 -1.29 6.14 -25.37 -0.16 -1.45 16 6 C -0.09 -0.97 3.66 -88.76 -0.32 -1.30 16 7 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 8 C -0.14 -1.41 9.16 37.15 0.34 -1.07 16 9 C 0.03 0.34 5.82 -1.89 -0.01 0.32 16 10 N -0.50 -5.92 4.94 -223.99 -1.11 -7.02 16 11 C 0.09 1.09 5.26 -4.97 -0.03 1.07 16 12 C -0.20 -2.97 4.13 -104.59 -0.43 -3.41 16 13 C -0.06 -0.95 7.49 -39.61 -0.30 -1.24 16 14 C -0.22 -3.65 9.21 -39.38 -0.36 -4.01 16 15 C 0.24 4.72 6.55 -83.79 -0.55 4.17 16 16 N -0.61 -12.53 2.99 -181.01 -0.54 -13.07 16 17 C 0.10 1.66 10.19 59.84 0.61 2.27 16 18 C 0.22 5.14 3.99 -5.19 -0.02 5.12 16 19 C -0.54 -14.76 9.94 -34.44 -0.34 -15.10 16 20 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 22 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 23 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.19 -3.63 9.21 -39.38 -0.36 -3.99 16 28 C -0.06 -1.02 7.75 -39.61 -0.31 -1.32 16 29 H 0.05 0.51 6.28 -51.93 -0.33 0.18 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.65 6.31 -51.93 -0.33 0.33 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 35 H 0.07 0.63 7.69 -51.93 -0.40 0.23 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.06 0.83 4.96 -51.93 -0.26 0.57 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.08 0.97 5.30 -51.93 -0.28 0.69 16 43 H 0.11 1.41 5.91 -52.49 -0.31 1.10 16 44 H 0.11 1.73 6.14 -52.49 -0.32 1.40 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 47 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 48 H 0.03 0.63 7.13 -51.94 -0.37 0.26 16 49 H 0.03 0.61 5.61 -51.93 -0.29 0.32 16 50 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.13 2.68 6.14 -52.48 -0.32 2.35 16 52 H 0.11 1.64 7.73 -52.49 -0.41 1.24 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -29.15 383.53 -10.87 -40.02 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.78 Total: 4.36 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.33 Total: -19.92 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.87 Total: -46.11 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.15 -10.87 -40.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769446921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.241 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds