Wall clock time and date at job start Tue Mar 31 2020 11:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 H 1.09002 * 110.06502 * 301.21511 * 3 2 1 5 5 C 1.53994 * 109.91410 * 180.02562 * 3 2 1 6 6 C 1.54601 * 105.14016 * 239.41823 * 5 3 2 7 7 H 1.09001 * 110.72046 * 96.40131 * 6 5 3 8 8 C 1.52994 * 110.72327 * 219.68574 * 6 5 3 9 9 C 1.54937 * 102.91984 * 338.04471 * 6 5 3 10 10 N 1.47899 * 109.92059 * 62.42559 * 3 2 1 11 11 C 1.46904 * 110.99712 * 265.19778 * 10 3 2 12 12 C 1.50700 * 109.47108 * 306.13049 * 11 10 3 13 13 C 1.38287 * 119.92524 * 89.99981 * 12 11 10 14 14 C 1.38112 * 120.07087 * 180.02562 * 13 12 11 15 15 C 1.38902 * 119.92568 * 359.97438 * 14 13 12 16 16 N 1.39681 * 120.07196 * 179.97438 * 15 14 13 17 17 C 1.46494 * 119.99983 * 359.97438 * 16 15 14 18 18 C 1.46501 * 120.00030 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.46592 * 269.99742 * 18 16 15 20 20 H 1.08003 * 120.00449 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99632 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99606 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00379 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47080 * 269.99811 * 23 21 19 25 25 H 1.48503 * 109.47017 * 29.99590 * 23 21 19 26 26 H 1.48497 * 109.47115 * 149.99582 * 23 21 19 27 27 C 1.38910 * 119.85170 * 0.25755 * 15 14 13 28 28 C 1.38102 * 119.92630 * 359.48701 * 27 15 14 29 29 H 1.09000 * 109.47176 * 53.40783 * 1 2 3 30 30 H 1.08998 * 109.47433 * 173.40737 * 1 2 3 31 31 H 1.08998 * 109.47032 * 293.40983 * 1 2 3 32 32 H 1.08998 * 109.47182 * 239.99834 * 2 1 3 33 33 H 1.09004 * 109.46951 * 119.99546 * 2 1 3 34 34 H 1.09006 * 110.30475 * 120.50773 * 5 3 2 35 35 H 1.08999 * 110.39927 * 358.38043 * 5 3 2 36 36 H 1.09001 * 109.47075 * 174.95610 * 8 6 5 37 37 H 1.08999 * 109.47374 * 294.95489 * 8 6 5 38 38 H 1.09004 * 109.47342 * 54.95614 * 8 6 5 39 39 H 1.09003 * 110.66637 * 278.97826 * 9 6 5 40 40 H 1.08997 * 110.80817 * 155.90984 * 9 6 5 41 41 H 1.08994 * 109.46993 * 186.13306 * 11 10 3 42 42 H 1.09002 * 109.47247 * 66.12826 * 11 10 3 43 43 H 1.07993 * 119.96419 * 0.04415 * 13 12 11 44 44 H 1.08002 * 120.03394 * 179.97438 * 14 13 12 45 45 H 1.08993 * 109.47801 * 270.00390 * 17 16 15 46 46 H 1.09003 * 109.47148 * 30.00723 * 17 16 15 47 47 H 1.09005 * 109.47096 * 149.99926 * 17 16 15 48 48 H 1.08989 * 109.47295 * 149.99775 * 18 16 15 49 49 H 1.09001 * 109.46797 * 29.99201 * 18 16 15 50 50 H 0.97000 * 119.99764 * 180.02562 * 22 21 19 51 51 H 1.08011 * 120.03585 * 179.72600 * 27 15 14 52 52 H 1.07997 * 119.96252 * 180.24947 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6643 1.9720 -0.8756 5 6 3.5799 1.4545 -0.0006 6 6 3.9783 2.2166 1.2841 7 1 4.1945 1.5202 2.0943 8 6 5.1755 3.1322 1.0211 9 6 2.7104 3.0491 1.6003 10 7 1.6011 2.1322 1.2325 11 6 0.3558 2.8772 1.0039 12 6 0.5323 3.8017 -0.1730 13 6 0.2311 3.3601 -1.4484 14 6 0.3923 4.2047 -2.5292 15 6 0.8571 5.4990 -2.3340 16 7 1.0217 6.3556 -3.4250 17 6 0.7047 5.8890 -4.7770 18 6 1.5126 7.7202 -3.2173 19 6 0.3446 8.6448 -2.9893 20 1 -0.6626 8.2548 -2.9977 21 6 0.5618 9.9884 -2.7688 22 7 -0.4576 10.7953 -2.5703 23 14 2.3037 10.6628 -2.7534 24 1 2.8457 10.6026 -1.3722 25 1 3.1574 9.8493 -3.6560 26 1 2.2928 12.0726 -3.2199 27 6 1.1633 5.9377 -1.0521 28 6 0.9948 5.0898 0.0249 29 1 -0.3633 0.6126 -0.8251 30 1 -0.3634 -1.0208 -0.1180 31 1 -0.3633 0.4083 0.9431 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9537 1.9765 -0.8815 35 1 3.9677 0.4362 0.0279 36 1 5.3826 3.7245 1.9124 37 1 6.0485 2.5274 0.7759 38 1 4.9484 3.7970 0.1877 39 1 2.6811 3.9521 0.9905 40 1 2.6665 3.3004 2.6600 41 1 0.1137 3.4614 1.8917 42 1 -0.4538 2.1771 0.7977 43 1 -0.1309 2.3539 -1.5994 44 1 0.1572 3.8591 -3.5251 45 1 1.5927 5.4435 -5.2252 46 1 -0.0898 5.1444 -4.7274 47 1 0.3750 6.7320 -5.3843 48 1 2.0665 8.0450 -4.0979 49 1 2.1684 7.7419 -2.3470 50 1 -0.3048 11.7406 -2.4155 51 1 1.5291 6.9421 -0.8973 52 1 1.2289 5.4316 1.0223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769446921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:32 Heat of formation + Delta-G solvation = 17.803306 kcal Electronic energy + Delta-G solvation = -27705.029551 eV Core-core repulsion = 24282.433597 eV Total energy + Delta-G solvation = -3422.595954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32724 -39.79136 -37.32153 -35.02099 -34.70058 -33.84043 -32.04409 -31.06542 -30.15412 -29.49410 -27.72214 -26.36210 -25.40687 -24.24183 -23.19160 -22.92286 -21.19078 -21.09776 -20.50258 -19.11059 -18.15455 -16.94356 -16.83206 -16.66586 -16.20296 -16.11524 -15.63584 -15.25447 -15.12939 -14.80691 -14.56004 -14.37377 -14.32031 -14.09235 -13.92838 -13.51674 -13.42722 -13.30404 -13.21912 -13.10108 -12.95253 -12.84413 -12.68410 -12.46979 -12.38800 -12.21605 -12.04927 -11.85851 -11.76652 -11.58175 -11.50885 -11.29238 -11.25114 -11.15094 -10.85068 -10.40718 -9.68026 -9.23570 -8.36208 -7.95578 -6.41736 0.61439 0.76910 1.31849 1.32394 1.43057 2.27689 2.49397 2.97462 2.99410 3.26118 3.72212 3.81714 3.97661 4.02509 4.12293 4.19838 4.23149 4.35002 4.39473 4.49015 4.52516 4.55415 4.62793 4.65762 4.72150 4.73240 4.77303 4.81540 4.82913 4.86303 4.90653 4.94139 4.97025 4.99682 5.06991 5.08161 5.17953 5.19792 5.26827 5.31364 5.32865 5.42253 5.42714 5.48834 5.53901 5.59035 5.63471 5.80741 6.05018 6.12907 6.16204 6.23506 6.56169 6.66207 6.82121 7.23794 8.81266 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003603 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.611614 B = 7769.025714 C = 8425.169801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C 0.046 3.954 4 H 0.063 0.937 5 C -0.122 4.122 6 C -0.089 4.089 7 H 0.086 0.914 8 C -0.141 4.141 9 C 0.025 3.975 10 N -0.497 5.497 11 C 0.091 3.909 12 C -0.189 4.189 13 C -0.057 4.057 14 C -0.217 4.217 15 C 0.214 3.786 16 N -0.627 5.627 17 C 0.097 3.903 18 C 0.233 3.767 19 C -0.537 4.537 20 H 0.024 0.976 21 C 0.013 3.987 22 N -0.945 5.945 23 Si 0.945 3.055 24 H -0.266 1.266 25 H -0.244 1.244 26 H -0.279 1.279 27 C -0.216 4.216 28 C -0.063 4.063 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.035 0.965 49 H 0.028 0.972 50 H 0.268 0.732 51 H 0.099 0.901 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.512 -22.241 5.489 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 C -0.062 4.062 4 H 0.080 0.920 5 C -0.160 4.160 6 C -0.108 4.108 7 H 0.104 0.896 8 C -0.198 4.198 9 C -0.103 4.103 10 N -0.219 5.219 11 C -0.037 4.037 12 C -0.192 4.192 13 C -0.076 4.076 14 C -0.239 4.239 15 C 0.110 3.890 16 N -0.335 5.335 17 C -0.046 4.046 18 C 0.110 3.890 19 C -0.576 4.576 20 H 0.043 0.957 21 C -0.185 4.185 22 N -0.585 5.585 23 Si 0.768 3.232 24 H -0.191 1.191 25 H -0.167 1.167 26 H -0.204 1.204 27 C -0.238 4.238 28 C -0.082 4.082 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.053 0.947 49 H 0.045 0.955 50 H 0.077 0.923 51 H 0.118 0.882 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.370 -22.320 5.756 24.523 hybrid contribution 0.242 2.030 -0.755 2.180 sum 8.612 -20.290 5.000 22.602 Atomic orbital electron populations 1.21886 0.95862 1.01528 1.01689 1.21457 0.96152 0.94410 1.01758 1.22721 0.94623 0.95992 0.92835 0.91952 1.22522 0.94794 1.01170 0.97488 1.21994 0.94045 0.96954 0.97809 0.89605 1.21747 0.97597 0.99163 1.01338 1.23463 0.90664 0.95281 1.00888 1.65117 1.02589 1.24271 1.29936 1.21338 0.93867 0.94314 0.94148 1.20275 1.07112 0.95397 0.96463 1.20923 0.96603 0.98764 0.91335 1.20808 1.09791 0.92816 1.00511 1.18176 0.92905 0.90312 0.87625 1.46693 1.69984 1.11848 1.04983 1.21634 1.00588 0.99880 0.82498 1.19320 0.93513 0.79504 0.96645 1.21654 0.93485 0.93182 1.49264 0.95731 1.25858 1.01728 0.97015 0.93885 1.70065 1.33205 1.05167 1.50063 0.85751 0.79482 0.78184 0.79803 1.19069 1.16712 1.20441 1.20785 1.10091 1.00510 0.92450 1.20828 0.96835 0.93185 0.97392 0.93270 0.92307 0.92258 0.91448 0.91690 0.92680 0.90088 0.92132 0.91565 0.94142 0.93771 0.90191 0.90574 0.88624 0.84362 0.85028 0.92035 0.90807 0.92534 0.94689 0.95451 0.92277 0.88246 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.54 71.98 0.61 -1.81 16 2 C -0.10 -1.65 5.42 30.59 0.17 -1.49 16 3 C 0.05 0.93 2.41 45.06 0.11 1.04 16 4 H 0.06 1.45 4.13 -2.39 -0.01 1.44 16 5 C -0.12 -2.31 6.14 31.48 0.19 -2.12 16 6 C -0.09 -1.67 3.66 -9.59 -0.04 -1.70 16 7 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 8 C -0.14 -2.55 9.16 71.98 0.66 -1.89 16 9 C 0.02 0.54 5.82 86.65 0.50 1.05 16 10 N -0.50 -10.60 4.94 -862.56 -4.26 -14.86 16 11 C 0.09 2.07 5.26 85.56 0.45 2.52 16 12 C -0.19 -5.29 4.13 -19.84 -0.08 -5.37 16 13 C -0.06 -1.59 7.49 22.25 0.17 -1.42 16 14 C -0.22 -6.98 9.21 22.40 0.21 -6.78 16 15 C 0.21 8.44 6.55 38.21 0.25 8.69 16 16 N -0.63 -26.15 2.99 -726.59 -2.17 -28.33 16 17 C 0.10 3.22 10.19 127.77 1.30 4.52 16 18 C 0.23 11.04 3.99 85.63 0.34 11.38 16 19 C -0.54 -30.95 9.94 25.60 0.25 -30.70 16 20 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 21 C 0.01 0.77 5.47 84.65 0.46 1.23 16 22 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 23 Si 0.95 42.96 27.47 68.60 1.88 44.84 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 C -0.22 -8.65 9.21 22.40 0.21 -8.44 16 28 C -0.06 -2.08 7.75 22.25 0.17 -1.91 16 29 H 0.05 0.80 6.28 -2.39 -0.01 0.78 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.01 6.31 -2.39 -0.02 1.00 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.05 1.16 7.82 -2.38 -0.02 1.14 16 35 H 0.08 1.30 7.69 -2.39 -0.02 1.28 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.04 0.86 8.10 -2.38 -0.02 0.84 16 39 H 0.04 1.14 4.96 -2.39 -0.01 1.13 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 42 H 0.10 1.97 5.30 -2.39 -0.01 1.96 16 43 H 0.14 3.08 5.91 -2.91 -0.02 3.07 16 44 H 0.13 3.71 6.14 -2.91 -0.02 3.69 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.17 6.20 -2.39 -0.01 2.15 16 47 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 48 H 0.04 1.60 7.13 -2.39 -0.02 1.58 16 49 H 0.03 1.30 5.61 -2.39 -0.01 1.28 16 50 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 51 H 0.10 4.45 6.14 -2.91 -0.02 4.43 16 52 H 0.12 3.62 7.73 -2.91 -0.02 3.60 16 Total: -1.00 -65.83 383.53 2.52 -63.31 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.84 Total: 26.85 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 5.94 Total: -33.18 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -6.14 Total: -101.82 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -65.83 2.52 -63.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769446921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.109 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds