Wall clock time and date at job start Tue Mar 31 2020 11:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47021 * 2 1 4 4 H 1.09004 * 110.01347 * 303.48918 * 3 2 1 5 5 C 1.54314 * 109.89148 * 64.60323 * 3 2 1 6 6 C 1.55144 * 103.01977 * 141.69146 * 5 3 2 7 7 H 1.08997 * 110.99048 * 82.47643 * 6 5 3 8 8 C 1.53007 * 110.98994 * 206.25930 * 6 5 3 9 9 C 1.54908 * 101.65421 * 324.34771 * 6 5 3 10 10 N 1.47451 * 109.88994 * 182.37496 * 3 2 1 11 11 C 1.46900 * 110.99739 * 3.84784 * 10 3 2 12 12 C 1.50702 * 109.46857 * 174.46180 * 11 10 3 13 13 C 1.38289 * 119.92128 * 90.00483 * 12 11 10 14 14 C 1.38102 * 120.07363 * 180.02562 * 13 12 11 15 15 C 1.38916 * 119.92256 * 359.97438 * 14 13 12 16 16 N 1.39677 * 120.06980 * 179.97438 * 15 14 13 17 17 C 1.46500 * 120.00413 * 0.02562 * 16 15 14 18 18 C 1.46496 * 119.99658 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47123 * 90.00266 * 18 16 15 20 20 H 1.07998 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00028 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00032 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47082 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47163 * 300.00254 * 23 21 19 26 26 H 1.48504 * 109.47083 * 60.00424 * 23 21 19 27 27 C 1.38905 * 119.85329 * 0.26041 * 15 14 13 28 28 C 1.38107 * 119.92444 * 359.48856 * 27 15 14 29 29 H 1.08999 * 109.47321 * 174.55515 * 1 2 3 30 30 H 1.08998 * 109.47489 * 294.55464 * 1 2 3 31 31 H 1.08998 * 109.47122 * 54.55986 * 1 2 3 32 32 H 1.09000 * 109.47455 * 240.00085 * 2 1 3 33 33 H 1.09002 * 109.47363 * 119.99338 * 2 1 3 34 34 H 1.08997 * 110.70887 * 260.06855 * 5 3 2 35 35 H 1.09007 * 110.70659 * 23.31246 * 5 3 2 36 36 H 1.08993 * 109.47447 * 59.99780 * 8 6 5 37 37 H 1.08998 * 109.46998 * 179.97438 * 8 6 5 38 38 H 1.09003 * 109.46569 * 299.99454 * 8 6 5 39 39 H 1.09003 * 110.37005 * 278.24157 * 9 6 5 40 40 H 1.08993 * 110.37808 * 155.90119 * 9 6 5 41 41 H 1.09003 * 109.47002 * 54.46651 * 11 10 3 42 42 H 1.08998 * 109.47159 * 294.46504 * 11 10 3 43 43 H 1.08001 * 119.96104 * 359.97438 * 13 12 11 44 44 H 1.07995 * 120.03702 * 179.97438 * 14 13 12 45 45 H 1.09008 * 109.46601 * 269.99994 * 17 16 15 46 46 H 1.09001 * 109.46704 * 29.99128 * 17 16 15 47 47 H 1.08994 * 109.47605 * 149.99403 * 17 16 15 48 48 H 1.09000 * 109.47337 * 330.00550 * 18 16 15 49 49 H 1.09003 * 109.47190 * 210.00184 * 18 16 15 50 50 H 0.96995 * 120.00010 * 359.97438 * 22 21 19 51 51 H 1.08003 * 120.03794 * 179.72240 * 27 15 14 52 52 H 1.07994 * 119.96358 * 180.25355 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6314 1.9826 -0.8542 5 6 1.6281 2.1449 1.3108 6 6 2.8679 3.0158 1.6451 7 1 2.8488 3.9524 1.0879 8 6 2.9640 3.2781 3.1494 9 6 4.0271 2.1072 1.1651 10 7 3.5132 1.4537 -0.0575 11 6 4.0453 0.0908 -0.1892 12 6 5.5388 0.1509 -0.3812 13 6 6.3772 0.1240 0.7182 14 6 7.7463 0.1796 0.5460 15 6 8.2810 0.2620 -0.7335 16 7 9.6652 0.3188 -0.9113 17 6 10.5550 0.2910 0.2523 18 6 10.2273 0.4063 -2.2613 19 6 10.3711 1.8545 -2.6527 20 1 10.0738 2.6319 -1.9645 21 6 10.8830 2.1869 -3.8890 22 7 11.2454 1.2402 -4.7269 23 14 11.0618 3.9820 -4.3739 24 1 11.6314 4.0707 -5.7424 25 1 9.7290 4.6364 -4.3497 26 1 11.9666 4.6659 -3.4153 27 6 7.4358 0.2937 -1.8354 28 6 6.0677 0.2326 -1.6563 29 1 -0.3634 -1.0230 -0.0975 30 1 -0.3634 0.4270 0.9347 31 1 -0.3633 0.5959 -0.8372 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.7493 2.7701 1.1535 35 1 1.4467 1.4142 2.0991 36 1 3.0502 2.3293 3.6789 37 1 3.8418 3.8902 3.3561 38 1 2.0685 3.8013 3.4848 39 1 4.2632 1.3608 1.9237 40 1 4.9079 2.7060 0.9337 41 1 3.5876 -0.3962 -1.0504 42 1 3.8174 -0.4770 0.7129 43 1 5.9608 0.0604 1.7127 44 1 8.4005 0.1589 1.4050 45 1 10.7401 1.3100 0.5925 46 1 10.0869 -0.2802 1.0539 47 1 11.4997 -0.1772 -0.0238 48 1 9.5632 -0.0959 -2.9646 49 1 11.2058 -0.0738 -2.2793 50 1 11.1529 0.3081 -4.4749 51 1 7.8481 0.3623 -2.8312 52 1 5.4102 0.2531 -2.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769446927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:38 Heat of formation + Delta-G solvation = 24.707486 kcal Electronic energy + Delta-G solvation = -26887.396730 eV Core-core repulsion = 23465.100163 eV Total energy + Delta-G solvation = -3422.296566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07591 -38.76272 -35.94124 -34.22169 -33.27932 -32.64519 -30.45959 -29.94390 -28.19706 -27.53297 -26.83543 -25.28348 -23.83314 -23.15086 -22.36157 -21.66263 -20.36944 -20.00312 -19.14361 -17.08096 -16.60704 -16.34161 -15.50238 -15.31685 -15.01908 -14.63729 -14.20676 -13.91638 -13.76903 -13.70581 -13.43727 -13.20572 -13.09402 -12.98981 -12.86222 -12.50591 -12.31647 -12.22320 -12.01146 -11.81979 -11.59480 -11.48107 -11.35930 -11.29474 -11.10721 -10.96940 -10.74286 -10.72684 -10.63334 -10.60674 -10.40399 -10.13053 -9.95696 -9.49230 -8.58456 -8.43909 -8.28623 -8.15276 -6.58840 -6.23967 -4.16622 2.08752 2.19728 3.41992 3.44501 3.62595 3.98464 4.09027 4.42823 4.46506 4.50629 4.55465 4.70402 4.92301 4.96700 5.07976 5.21227 5.28363 5.29713 5.30246 5.33704 5.38069 5.46907 5.50712 5.54262 5.57006 5.64863 5.71776 5.73499 5.75567 5.77102 5.85401 5.89244 5.96173 6.01947 6.06112 6.08652 6.17615 6.23192 6.25649 6.34925 6.38796 6.58775 6.81639 6.87829 6.98825 7.09495 7.14470 7.17809 7.32883 7.56379 7.98978 8.05384 8.37844 8.52306 8.76311 9.53679 10.93296 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.002943 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.276298 B = 9510.948819 C = 9702.772661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.071 3.929 4 H 0.083 0.917 5 C -0.131 4.131 6 C -0.106 4.106 7 H 0.082 0.918 8 C -0.140 4.140 9 C 0.053 3.947 10 N -0.519 5.519 11 C 0.104 3.896 12 C -0.165 4.165 13 C -0.067 4.067 14 C -0.220 4.220 15 C 0.240 3.760 16 N -0.613 5.613 17 C 0.102 3.898 18 C 0.240 3.760 19 C -0.610 4.610 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.910 5.910 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.288 1.288 27 C -0.188 4.188 28 C -0.052 4.052 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.025 0.975 49 H 0.018 0.982 50 H 0.267 0.733 51 H 0.128 0.872 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 -1.831 13.883 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C -0.037 4.037 4 H 0.101 0.899 5 C -0.169 4.169 6 C -0.125 4.125 7 H 0.100 0.900 8 C -0.198 4.198 9 C -0.075 4.075 10 N -0.242 5.242 11 C -0.023 4.023 12 C -0.168 4.168 13 C -0.086 4.086 14 C -0.243 4.243 15 C 0.134 3.866 16 N -0.319 5.319 17 C -0.042 4.042 18 C 0.120 3.880 19 C -0.648 4.648 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.546 5.546 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.215 1.215 27 C -0.210 4.210 28 C -0.071 4.071 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.036 0.964 50 H 0.077 0.923 51 H 0.146 0.854 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.751 -0.559 12.166 21.527 hybrid contribution -0.594 -1.347 1.980 2.467 sum -18.344 -1.906 14.146 23.243 Atomic orbital electron populations 1.21743 0.95641 1.01533 1.01788 1.22166 0.96226 0.97226 1.02491 1.22513 0.88285 0.95154 0.97731 0.89891 1.22931 0.98036 0.98693 0.97274 1.22324 0.94918 0.98957 0.96296 0.89974 1.21702 1.01731 1.01546 0.94837 1.23085 0.97652 0.96435 0.90286 1.63794 1.04851 1.18224 1.37356 1.21086 0.92045 0.88988 1.00163 1.19209 0.93675 1.10535 0.93365 1.20509 0.92648 0.98475 0.97010 1.20503 0.95095 1.13512 0.95222 1.17911 0.84063 0.91401 0.93263 1.46840 1.01615 1.76187 1.07291 1.21443 0.93806 1.00396 0.88565 1.19344 0.93044 0.97494 0.78127 1.22382 1.46623 0.92122 1.03720 0.92882 1.25824 0.93394 1.06424 0.92758 1.70826 1.44875 1.01271 1.37593 0.83536 0.76651 0.73926 0.76216 1.20678 1.21249 1.21466 1.20845 0.92790 1.08748 0.98621 1.20626 0.94087 0.96413 0.95987 0.92864 0.92832 0.92590 0.90904 0.91924 0.91193 0.91520 0.92832 0.92366 0.92652 0.93723 0.90193 0.90351 0.94732 0.87834 0.87016 0.94053 0.92732 0.92212 0.95707 0.96365 0.92286 0.85435 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.64 37.15 0.36 -0.74 16 2 C -0.14 -1.27 4.08 -26.74 -0.11 -1.38 16 3 C 0.07 0.72 3.49 -66.72 -0.23 0.49 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.13 -1.16 5.05 -24.91 -0.13 -1.28 16 6 C -0.11 -1.04 3.64 -88.47 -0.32 -1.36 16 7 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 8 C -0.14 -1.16 9.31 37.16 0.35 -0.82 16 9 C 0.05 0.64 4.96 -2.30 -0.01 0.63 16 10 N -0.52 -6.57 5.19 -224.78 -1.17 -7.74 16 11 C 0.10 1.34 3.83 -4.97 -0.02 1.32 16 12 C -0.16 -2.61 5.01 -104.58 -0.52 -3.13 16 13 C -0.07 -1.06 8.74 -39.61 -0.35 -1.40 16 14 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 15 C 0.24 4.97 6.55 -83.79 -0.55 4.43 16 16 N -0.61 -13.46 2.99 -181.00 -0.54 -14.00 16 17 C 0.10 1.84 10.23 59.85 0.61 2.45 16 18 C 0.24 6.09 4.26 -5.20 -0.02 6.07 16 19 C -0.61 -17.13 9.39 -34.44 -0.32 -17.46 16 20 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 21 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 22 N -0.91 -27.11 13.65 55.43 0.76 -26.35 16 23 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 C -0.19 -3.91 9.20 -39.38 -0.36 -4.27 16 28 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 7.54 -51.93 -0.39 -0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.68 6.28 -51.93 -0.33 0.36 16 33 H 0.06 0.57 6.96 -51.93 -0.36 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 36 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.04 0.53 6.54 -51.93 -0.34 0.19 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 0.96 6.23 -51.93 -0.32 0.64 16 42 H 0.03 0.42 6.71 -51.93 -0.35 0.07 16 43 H 0.10 1.39 7.27 -52.49 -0.38 1.01 16 44 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 45 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 46 H 0.05 0.83 6.20 -51.93 -0.32 0.51 16 47 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 48 H 0.03 0.66 6.07 -51.93 -0.32 0.34 16 49 H 0.02 0.48 7.76 -51.93 -0.40 0.08 16 50 H 0.27 7.86 7.22 -40.82 -0.29 7.56 16 51 H 0.13 2.94 6.15 -52.48 -0.32 2.61 16 52 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -29.95 394.66 -11.67 -41.62 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -9.11 Total: 1.76 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.47 Total: -21.53 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.95 Total: -48.08 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.95 -11.67 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769446927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.332 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds