Wall clock time and date at job start Tue Mar 31 2020 11:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47021 * 2 1 4 4 H 1.09004 * 110.01347 * 303.48918 * 3 2 1 5 5 C 1.54314 * 109.89148 * 64.60323 * 3 2 1 6 6 C 1.55144 * 103.01977 * 141.69146 * 5 3 2 7 7 H 1.08997 * 110.99048 * 82.47643 * 6 5 3 8 8 C 1.53007 * 110.98994 * 206.25930 * 6 5 3 9 9 C 1.54908 * 101.65421 * 324.34771 * 6 5 3 10 10 N 1.47451 * 109.88994 * 182.37496 * 3 2 1 11 11 C 1.46900 * 110.99739 * 3.84784 * 10 3 2 12 12 C 1.50702 * 109.46857 * 174.46180 * 11 10 3 13 13 C 1.38289 * 119.92128 * 90.00483 * 12 11 10 14 14 C 1.38102 * 120.07363 * 180.02562 * 13 12 11 15 15 C 1.38916 * 119.92256 * 359.97438 * 14 13 12 16 16 N 1.39677 * 120.06980 * 179.97438 * 15 14 13 17 17 C 1.46500 * 120.00413 * 0.02562 * 16 15 14 18 18 C 1.46496 * 119.99658 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47123 * 90.00266 * 18 16 15 20 20 H 1.07998 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00028 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00032 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47082 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47163 * 300.00254 * 23 21 19 26 26 H 1.48504 * 109.47083 * 60.00424 * 23 21 19 27 27 C 1.38905 * 119.85329 * 0.26041 * 15 14 13 28 28 C 1.38107 * 119.92444 * 359.48856 * 27 15 14 29 29 H 1.08999 * 109.47321 * 174.55515 * 1 2 3 30 30 H 1.08998 * 109.47489 * 294.55464 * 1 2 3 31 31 H 1.08998 * 109.47122 * 54.55986 * 1 2 3 32 32 H 1.09000 * 109.47455 * 240.00085 * 2 1 3 33 33 H 1.09002 * 109.47363 * 119.99338 * 2 1 3 34 34 H 1.08997 * 110.70887 * 260.06855 * 5 3 2 35 35 H 1.09007 * 110.70659 * 23.31246 * 5 3 2 36 36 H 1.08993 * 109.47447 * 59.99780 * 8 6 5 37 37 H 1.08998 * 109.46998 * 179.97438 * 8 6 5 38 38 H 1.09003 * 109.46569 * 299.99454 * 8 6 5 39 39 H 1.09003 * 110.37005 * 278.24157 * 9 6 5 40 40 H 1.08993 * 110.37808 * 155.90119 * 9 6 5 41 41 H 1.09003 * 109.47002 * 54.46651 * 11 10 3 42 42 H 1.08998 * 109.47159 * 294.46504 * 11 10 3 43 43 H 1.08001 * 119.96104 * 359.97438 * 13 12 11 44 44 H 1.07995 * 120.03702 * 179.97438 * 14 13 12 45 45 H 1.09008 * 109.46601 * 269.99994 * 17 16 15 46 46 H 1.09001 * 109.46704 * 29.99128 * 17 16 15 47 47 H 1.08994 * 109.47605 * 149.99403 * 17 16 15 48 48 H 1.09000 * 109.47337 * 330.00550 * 18 16 15 49 49 H 1.09003 * 109.47190 * 210.00184 * 18 16 15 50 50 H 0.96995 * 120.00010 * 359.97438 * 22 21 19 51 51 H 1.08003 * 120.03794 * 179.72240 * 27 15 14 52 52 H 1.07994 * 119.96358 * 180.25355 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6314 1.9826 -0.8542 5 6 1.6281 2.1449 1.3108 6 6 2.8679 3.0158 1.6451 7 1 2.8488 3.9524 1.0879 8 6 2.9640 3.2781 3.1494 9 6 4.0271 2.1072 1.1651 10 7 3.5132 1.4537 -0.0575 11 6 4.0453 0.0908 -0.1892 12 6 5.5388 0.1509 -0.3812 13 6 6.3772 0.1240 0.7182 14 6 7.7463 0.1796 0.5460 15 6 8.2810 0.2620 -0.7335 16 7 9.6652 0.3188 -0.9113 17 6 10.5550 0.2910 0.2523 18 6 10.2273 0.4063 -2.2613 19 6 10.3711 1.8545 -2.6527 20 1 10.0738 2.6319 -1.9645 21 6 10.8830 2.1869 -3.8890 22 7 11.2454 1.2402 -4.7269 23 14 11.0618 3.9820 -4.3739 24 1 11.6314 4.0707 -5.7424 25 1 9.7290 4.6364 -4.3497 26 1 11.9666 4.6659 -3.4153 27 6 7.4358 0.2937 -1.8354 28 6 6.0677 0.2326 -1.6563 29 1 -0.3634 -1.0230 -0.0975 30 1 -0.3634 0.4270 0.9347 31 1 -0.3633 0.5959 -0.8372 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.7493 2.7701 1.1535 35 1 1.4467 1.4142 2.0991 36 1 3.0502 2.3293 3.6789 37 1 3.8418 3.8902 3.3561 38 1 2.0685 3.8013 3.4848 39 1 4.2632 1.3608 1.9237 40 1 4.9079 2.7060 0.9337 41 1 3.5876 -0.3962 -1.0504 42 1 3.8174 -0.4770 0.7129 43 1 5.9608 0.0604 1.7127 44 1 8.4005 0.1589 1.4050 45 1 10.7401 1.3100 0.5925 46 1 10.0869 -0.2802 1.0539 47 1 11.4997 -0.1772 -0.0238 48 1 9.5632 -0.0959 -2.9646 49 1 11.2058 -0.0738 -2.2793 50 1 11.1529 0.3081 -4.4749 51 1 7.8481 0.3623 -2.8312 52 1 5.4102 0.2531 -2.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769446927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:37 Heat of formation + Delta-G solvation = 9.403614 kcal Electronic energy + Delta-G solvation = -26888.060356 eV Core-core repulsion = 23465.100163 eV Total energy + Delta-G solvation = -3422.960192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08583 -40.10876 -37.49672 -35.20222 -34.87864 -33.87823 -31.94078 -31.12251 -29.36982 -29.06818 -27.78217 -26.64371 -25.44107 -23.98827 -23.82981 -23.12350 -21.38882 -21.17339 -20.12275 -19.13521 -18.09737 -17.32227 -16.79621 -16.42332 -16.03715 -15.78805 -15.71477 -15.63567 -15.17755 -14.98342 -14.58260 -14.45243 -14.18977 -13.94672 -13.91504 -13.78805 -13.49294 -13.30050 -13.22127 -13.09201 -12.99837 -12.81646 -12.71350 -12.49882 -12.34766 -12.05070 -11.98989 -11.91657 -11.81208 -11.57981 -11.50285 -11.39943 -11.32185 -11.14928 -10.63135 -10.35468 -9.73326 -9.09678 -8.78903 -7.93534 -6.46431 0.63666 0.77069 1.48173 1.55555 1.75858 2.43085 2.54333 2.90364 3.07584 3.30996 3.67070 3.74631 3.88855 3.97571 4.10944 4.13977 4.19922 4.25246 4.32117 4.41786 4.43641 4.53352 4.56481 4.58570 4.62715 4.66347 4.68653 4.71590 4.77924 4.82888 4.86508 4.89613 4.90897 4.96307 4.98948 5.02817 5.10702 5.19793 5.21402 5.22914 5.28226 5.38190 5.41635 5.52370 5.54273 5.58470 5.82254 5.86877 5.97361 6.13908 6.19700 6.26676 6.41631 6.60908 6.81997 7.32617 8.64491 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.002943 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.276298 B = 9510.948819 C = 9702.772661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.070 3.930 4 H 0.076 0.924 5 C -0.122 4.122 6 C -0.103 4.103 7 H 0.072 0.928 8 C -0.136 4.136 9 C 0.052 3.948 10 N -0.540 5.540 11 C 0.110 3.890 12 C -0.151 4.151 13 C -0.060 4.060 14 C -0.214 4.214 15 C 0.211 3.789 16 N -0.630 5.630 17 C 0.101 3.899 18 C 0.254 3.746 19 C -0.616 4.616 20 H 0.039 0.961 21 C -0.027 4.027 22 N -0.931 5.931 23 Si 1.114 2.886 24 H -0.278 1.278 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.216 4.216 28 C -0.057 4.057 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.037 0.963 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.005 0.995 49 H 0.005 0.995 50 H 0.256 0.744 51 H 0.090 0.910 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.084 -1.407 16.505 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.037 4.037 4 H 0.094 0.906 5 C -0.160 4.160 6 C -0.122 4.122 7 H 0.091 0.909 8 C -0.194 4.194 9 C -0.075 4.075 10 N -0.264 5.264 11 C -0.017 4.017 12 C -0.154 4.154 13 C -0.079 4.079 14 C -0.236 4.236 15 C 0.106 3.894 16 N -0.338 5.338 17 C -0.042 4.042 18 C 0.132 3.868 19 C -0.655 4.655 20 H 0.057 0.943 21 C -0.226 4.226 22 N -0.568 5.568 23 Si 0.935 3.065 24 H -0.203 1.203 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.239 4.239 28 C -0.077 4.077 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.156 0.844 44 H 0.151 0.849 45 H 0.056 0.944 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.023 0.977 49 H 0.023 0.977 50 H 0.066 0.934 51 H 0.108 0.892 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.186 -0.153 14.827 25.047 hybrid contribution 0.016 -1.511 1.206 1.933 sum -20.170 -1.663 16.033 25.820 Atomic orbital electron populations 1.21713 0.94367 1.02038 1.02244 1.22106 0.97311 0.96043 1.02196 1.22536 0.86596 0.96245 0.98342 0.90637 1.22889 0.97879 0.98672 0.96592 1.22293 0.94461 0.98235 0.97242 0.90949 1.21672 1.02237 1.01941 0.93549 1.23040 0.97589 0.96675 0.90228 1.63674 1.06634 1.17938 1.38142 1.21057 0.89649 0.89683 1.01324 1.19584 0.95728 1.07731 0.92365 1.20889 0.91809 0.96602 0.98551 1.20767 0.96326 1.12204 0.94353 1.18183 0.83486 0.93182 0.94515 1.46747 1.02685 1.77760 1.06609 1.21588 0.93723 1.00780 0.88100 1.18898 0.91946 0.95696 0.80268 1.22606 1.46141 0.93152 1.03604 0.94280 1.27242 0.92655 1.09767 0.92916 1.70935 1.46518 1.01129 1.38177 0.82968 0.77431 0.69628 0.76454 1.20285 1.20218 1.19456 1.20732 0.94416 1.11485 0.97279 1.20771 0.92907 0.96359 0.97630 0.92282 0.92004 0.92614 0.91639 0.91698 0.89939 0.90517 0.92277 0.92745 0.91372 0.93012 0.92910 0.89785 0.92920 0.84388 0.84896 0.94402 0.89480 0.92052 0.97745 0.97686 0.93417 0.89198 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.64 71.98 0.69 -1.03 16 2 C -0.14 -2.08 4.08 30.59 0.12 -1.95 16 3 C 0.07 1.27 3.49 45.25 0.16 1.42 16 4 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.12 -1.77 5.05 31.78 0.16 -1.61 16 6 C -0.10 -1.78 3.64 -9.40 -0.03 -1.82 16 7 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 8 C -0.14 -1.87 9.31 71.98 0.67 -1.20 16 9 C 0.05 1.15 4.96 86.77 0.43 1.58 16 10 N -0.54 -12.64 5.19 -865.06 -4.49 -17.13 16 11 C 0.11 2.56 3.83 85.56 0.33 2.89 16 12 C -0.15 -4.55 5.01 -19.84 -0.10 -4.65 16 13 C -0.06 -1.72 8.74 22.25 0.19 -1.53 16 14 C -0.21 -7.24 9.21 22.40 0.21 -7.03 16 15 C 0.21 8.89 6.55 38.21 0.25 9.14 16 16 N -0.63 -28.48 2.99 -726.56 -2.17 -30.65 16 17 C 0.10 3.62 10.23 127.77 1.31 4.92 16 18 C 0.25 13.63 4.26 85.63 0.36 14.00 16 19 C -0.62 -36.02 9.39 25.60 0.24 -35.78 16 20 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 21 C -0.03 -1.59 5.46 84.66 0.46 -1.12 16 22 N -0.93 -57.36 13.65 21.45 0.29 -57.07 16 23 Si 1.11 51.66 29.90 68.60 2.05 53.71 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C -0.22 -9.48 9.20 22.40 0.21 -9.27 16 28 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.64 7.54 -2.39 -0.02 0.62 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.08 6.28 -2.39 -0.01 1.07 16 33 H 0.06 0.96 6.96 -2.39 -0.02 0.94 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.00 7.67 -2.38 -0.02 0.98 16 36 H 0.06 0.75 8.07 -2.39 -0.02 0.73 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 1.05 6.54 -2.39 -0.02 1.04 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.89 6.23 -2.39 -0.01 1.87 16 42 H 0.05 1.07 6.71 -2.39 -0.02 1.05 16 43 H 0.14 3.10 7.27 -2.91 -0.02 3.08 16 44 H 0.13 3.88 6.14 -2.91 -0.02 3.86 16 45 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.09 2.50 6.20 -2.39 -0.01 2.48 16 47 H 0.06 2.13 7.89 -2.39 -0.02 2.11 16 48 H 0.00 0.27 6.07 -2.39 -0.01 0.25 16 49 H 0.01 0.29 7.76 -2.39 -0.02 0.27 16 50 H 0.26 15.89 7.22 -92.71 -0.67 15.22 16 51 H 0.09 4.54 6.15 -2.91 -0.02 4.52 16 52 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -67.25 394.66 2.54 -64.72 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.97 Total: 21.32 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 5.88 Total: -34.89 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -6.37 Total: -104.86 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.05 Total: 53.71 kcal Total: -67.25 2.54 -64.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769446927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.121 kcal (2) G-P(sol) polarization free energy of solvation -67.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds