Wall clock time and date at job start Tue Mar 31 2020 11:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47051 * 2 1 4 4 C 1.46500 * 119.99930 * 269.99656 * 3 2 1 5 5 C 1.52997 * 109.47286 * 270.00204 * 4 3 2 6 6 C 1.39674 * 120.00248 * 90.00239 * 3 2 1 7 7 C 1.38917 * 120.07208 * 359.72158 * 6 3 2 8 8 C 1.38100 * 119.92200 * 179.79350 * 7 6 3 9 9 C 1.38294 * 120.07718 * 0.46370 * 8 7 6 10 10 C 1.50695 * 119.92420 * 179.77032 * 9 8 7 11 11 N 1.46505 * 109.46758 * 270.01743 * 10 9 8 12 12 C 1.36941 * 119.99961 * 269.99868 * 11 10 9 13 13 H 1.08003 * 119.99299 * 141.50272 * 12 11 10 14 14 C 1.38810 * 120.00189 * 321.50424 * 12 11 10 15 15 N 1.31616 * 120.00060 * 339.42553 * 14 12 11 16 16 Si 1.86802 * 119.99840 * 159.41994 * 14 12 11 17 17 H 1.48495 * 109.46857 * 89.99801 * 16 14 12 18 18 H 1.48497 * 109.47166 * 210.00303 * 16 14 12 19 19 H 1.48496 * 109.46995 * 330.00091 * 16 14 12 20 20 C 1.46497 * 119.99832 * 90.00491 * 11 10 9 21 21 C 1.54267 * 110.03086 * 242.55425 * 20 11 10 22 22 C 1.54968 * 104.16163 * 217.13701 * 21 20 11 23 23 C 1.54885 * 102.77595 * 37.88633 * 22 21 20 24 24 C 1.53877 * 110.03359 * 125.33840 * 20 11 10 25 25 C 1.38278 * 120.14791 * 359.78938 * 9 8 7 26 26 C 1.38108 * 120.07696 * 359.97438 * 25 9 8 27 27 H 1.09000 * 109.47480 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47334 * 300.00141 * 1 2 3 29 29 H 1.08997 * 109.47275 * 60.00100 * 1 2 3 30 30 H 1.09002 * 109.46862 * 240.00069 * 2 1 3 31 31 H 1.09004 * 109.46928 * 119.99908 * 2 1 3 32 32 H 1.09000 * 109.46962 * 30.00645 * 4 3 2 33 33 H 1.09003 * 109.47148 * 149.99785 * 4 3 2 34 34 H 1.08996 * 109.47315 * 60.00398 * 5 4 3 35 35 H 1.09006 * 109.46984 * 179.97438 * 5 4 3 36 36 H 1.08993 * 109.47134 * 299.99920 * 5 4 3 37 37 H 1.07997 * 120.03502 * 0.02562 * 7 6 3 38 38 H 1.07997 * 119.96290 * 180.22747 * 8 7 6 39 39 H 1.08997 * 109.47653 * 30.01507 * 10 9 8 40 40 H 1.09003 * 109.47083 * 150.02111 * 10 9 8 41 41 H 0.97001 * 119.99794 * 175.04624 * 15 14 12 42 42 H 1.09007 * 110.02044 * 3.94788 * 20 11 10 43 43 H 1.08993 * 110.48997 * 335.78637 * 21 20 11 44 44 H 1.08999 * 110.48536 * 98.43013 * 21 20 11 45 45 H 1.09001 * 110.71858 * 279.57545 * 22 21 20 46 46 H 1.08998 * 110.92210 * 156.30087 * 22 21 20 47 47 H 1.09001 * 110.48670 * 203.40231 * 23 22 21 48 48 H 1.09004 * 110.59537 * 80.82094 * 23 22 21 49 49 H 1.09004 * 110.03468 * 238.56655 * 24 20 11 50 50 H 1.09000 * 110.03109 * 359.95277 * 24 20 11 51 51 H 1.08002 * 119.96513 * 179.97438 * 25 9 8 52 52 H 1.08000 * 120.04002 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2511 2.0397 1.2096 7 6 2.0147 1.3882 2.4135 8 6 2.2500 2.0407 3.6077 9 6 2.7114 3.3444 3.6059 10 6 2.9621 4.0549 4.9110 11 7 1.7411 4.7457 5.3333 12 6 1.5130 6.0367 4.9377 13 1 0.5147 6.3517 4.6720 14 6 2.5649 6.9405 4.8783 15 7 3.6674 6.7130 5.5602 16 14 2.4158 8.4796 3.8302 17 1 1.8428 9.5802 4.6460 18 1 3.7598 8.8758 3.3385 19 1 1.5262 8.2062 2.6731 20 6 0.7641 4.0552 6.1789 21 6 -0.5799 3.9226 5.4333 22 6 -1.6478 4.1234 6.5381 23 6 -1.0187 5.2253 7.4264 24 6 0.4854 4.8827 7.4458 25 6 2.9428 3.9976 2.4093 26 6 2.7142 3.3493 1.2114 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.8745 0.7622 -1.8408 35 1 3.8890 2.3448 -2.6546 36 1 4.3882 2.2154 -0.9508 37 1 1.6508 0.3714 2.4156 38 1 2.0699 1.5337 4.5440 39 1 3.2498 3.3284 5.6709 40 1 3.7641 4.7816 4.7808 41 1 4.4289 7.3060 5.4631 42 1 1.1384 3.0686 6.4522 43 1 -0.6707 4.6956 4.6702 44 1 -0.6727 2.9323 4.9874 45 1 -1.7920 3.2046 7.1065 46 1 -2.5910 4.4634 6.1106 47 1 -1.4322 5.1852 8.4341 48 1 -1.1801 6.2100 6.9878 49 1 0.7236 4.2975 8.3341 50 1 1.0776 5.7977 7.4320 51 1 3.3027 5.0159 2.4113 52 1 2.8947 3.8602 0.2771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769466943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:54 Heat of formation + Delta-G solvation = 38.945054 kcal Electronic energy + Delta-G solvation = -27713.025804 eV Core-core repulsion = 24291.346625 eV Total energy + Delta-G solvation = -3421.679179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.28899 -37.72105 -36.50131 -34.10303 -32.43385 -31.38710 -30.34358 -29.93674 -28.16983 -27.74198 -26.43089 -25.13227 -23.90996 -22.74960 -21.44726 -21.28017 -19.90786 -19.43375 -18.92679 -17.18224 -16.20315 -15.88256 -15.26311 -14.72829 -14.60068 -14.37495 -14.16824 -13.97571 -13.76003 -13.43344 -13.21349 -13.02564 -12.82630 -12.58976 -12.47110 -12.41081 -12.05921 -11.85737 -11.76314 -11.40635 -11.13956 -11.05897 -10.97699 -10.94508 -10.73368 -10.36620 -10.33721 -10.29141 -10.23841 -10.13399 -10.03607 -9.72095 -9.62258 -9.44491 -9.09953 -8.38441 -8.18415 -6.70545 -6.47773 -5.68532 -3.30192 2.16967 2.35053 3.34161 3.38201 3.46879 3.50749 4.50786 4.63484 4.86762 4.95638 5.12527 5.30237 5.34687 5.37469 5.39331 5.48453 5.51601 5.54361 5.57133 5.58578 5.59943 5.75968 5.78688 5.88471 5.89401 6.04637 6.10946 6.14544 6.22819 6.27149 6.30098 6.31756 6.38239 6.46210 6.52205 6.62682 6.64441 6.69833 6.72627 6.79028 6.94283 6.99013 7.10355 7.24080 7.29948 7.46529 7.52244 7.61255 7.66492 7.84873 7.90886 8.04474 8.61588 9.27665 9.90241 10.49488 11.27055 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.004512 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.555880 B = 6204.054894 C = 7623.455431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 N -0.636 5.636 4 C 0.123 3.877 5 C -0.171 4.171 6 C 0.193 3.807 7 C -0.200 4.200 8 C -0.077 4.077 9 C -0.117 4.117 10 C 0.180 3.820 11 N -0.569 5.569 12 C -0.237 4.237 13 H 0.057 0.943 14 C 0.012 3.988 15 N -0.885 5.885 16 Si 0.883 3.117 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.174 3.826 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 C -0.054 4.054 26 C -0.198 4.198 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.028 0.972 40 H 0.098 0.902 41 H 0.252 0.748 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.061 0.939 49 H 0.039 0.961 50 H 0.086 0.914 51 H 0.116 0.884 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -11.769 -8.768 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.001 3.999 3 N -0.350 5.350 4 C 0.000 4.000 5 C -0.230 4.230 6 C 0.094 3.906 7 C -0.222 4.222 8 C -0.097 4.097 9 C -0.122 4.122 10 C 0.055 3.945 11 N -0.287 5.287 12 C -0.367 4.367 13 H 0.075 0.925 14 C -0.187 4.187 15 N -0.527 5.527 16 Si 0.712 3.288 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.204 1.204 20 C 0.067 3.933 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.170 4.170 25 C -0.074 4.074 26 C -0.220 4.220 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.046 0.954 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.104 0.896 51 H 0.134 0.866 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.607 -11.695 -8.806 15.078 hybrid contribution -0.156 0.806 -0.739 1.104 sum -3.763 -10.890 -9.545 14.962 Atomic orbital electron populations 1.22239 0.96966 1.01351 1.02525 1.21222 0.93586 0.83190 1.01863 1.46399 1.73049 1.12750 1.02763 1.21241 0.95604 0.97882 0.85294 1.22232 0.98026 1.01581 1.01161 1.17629 0.96117 0.91689 0.85145 1.20488 1.10297 0.99951 0.91438 1.20744 0.97876 0.94784 0.96259 1.20966 0.99667 0.93545 0.97993 1.19916 0.92079 0.94385 0.88149 1.43882 1.20130 1.10352 1.54381 1.18839 0.94617 0.85371 1.37838 0.92529 1.25074 0.98178 0.96762 0.98710 1.70063 1.04773 1.39051 1.38831 0.86624 0.76990 0.84083 0.81078 1.21393 1.21576 1.20416 1.21007 0.89411 0.93501 0.89370 1.22827 0.96041 1.00363 0.97969 1.22445 0.97804 0.98178 0.97698 1.22247 0.96751 0.98598 0.97883 1.22549 0.95097 1.02007 0.97374 1.20838 0.96526 0.98753 0.91237 1.20616 1.09188 0.93946 0.98241 0.92355 0.92069 0.92904 0.91764 0.90978 0.91733 0.90831 0.92958 0.92303 0.92093 0.87418 0.87483 0.95351 0.88449 0.93778 0.93673 0.91011 0.93634 0.92819 0.93103 0.93558 0.92069 0.94215 0.89554 0.86560 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.24 37.16 0.38 -1.36 16 2 C 0.13 1.34 5.87 -4.05 -0.02 1.31 16 3 N -0.64 -8.32 2.61 -171.75 -0.45 -8.77 16 4 C 0.12 1.38 5.88 -4.04 -0.02 1.35 16 5 C -0.17 -1.74 10.24 37.16 0.38 -1.36 16 6 C 0.19 3.13 6.55 -83.78 -0.55 2.58 16 7 C -0.20 -3.29 9.21 -39.38 -0.36 -3.65 16 8 C -0.08 -1.41 9.69 -39.61 -0.38 -1.79 16 9 C -0.12 -2.41 5.46 -104.59 -0.57 -2.99 16 10 C 0.18 4.14 5.40 -5.19 -0.03 4.11 16 11 N -0.57 -13.45 2.36 -165.75 -0.39 -13.84 16 12 C -0.24 -6.13 7.75 -15.06 -0.12 -6.24 16 13 H 0.06 1.52 6.94 -52.48 -0.36 1.15 16 14 C 0.01 0.33 4.97 -17.43 -0.09 0.24 16 15 N -0.88 -24.46 11.48 55.49 0.64 -23.82 16 16 Si 0.88 21.16 29.60 -169.99 -5.03 16.12 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.17 3.63 3.42 -66.81 -0.23 3.40 16 21 C -0.13 -2.53 6.43 -25.03 -0.16 -2.69 16 22 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 23 C -0.12 -2.06 6.83 -25.07 -0.17 -2.23 16 24 C -0.13 -2.65 6.24 -25.61 -0.16 -2.81 16 25 C -0.05 -1.10 9.69 -39.61 -0.38 -1.48 16 26 C -0.20 -3.50 9.21 -39.38 -0.36 -3.86 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.07 0.78 6.21 -51.93 -0.32 0.46 16 32 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.55 6.15 -52.49 -0.32 1.22 16 38 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.03 0.63 7.85 -51.93 -0.41 0.22 16 40 H 0.10 2.52 5.50 -51.93 -0.29 2.23 16 41 H 0.25 6.81 8.32 -40.82 -0.34 6.47 16 42 H 0.04 0.91 7.81 -51.93 -0.41 0.50 16 43 H 0.07 1.55 6.64 -51.93 -0.34 1.20 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 2.07 7.17 -51.93 -0.37 1.69 16 51 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 52 H 0.11 1.74 6.14 -52.49 -0.32 1.42 16 LS Contribution 402.24 15.07 6.06 6.06 Total: -1.00 -27.36 402.24 -11.56 -38.91 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -9.36 Total: 5.01 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -3.02 Total: -19.67 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.20 Total: -46.44 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -27.36 -11.56 -38.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769466943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.859 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds