Wall clock time and date at job start Tue Mar 31 2020 11:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47051 * 2 1 4 4 C 1.46500 * 119.99930 * 269.99656 * 3 2 1 5 5 C 1.52997 * 109.47286 * 270.00204 * 4 3 2 6 6 C 1.39674 * 120.00248 * 90.00239 * 3 2 1 7 7 C 1.38917 * 120.07208 * 359.72158 * 6 3 2 8 8 C 1.38100 * 119.92200 * 179.79350 * 7 6 3 9 9 C 1.38294 * 120.07718 * 0.46370 * 8 7 6 10 10 C 1.50695 * 119.92420 * 179.77032 * 9 8 7 11 11 N 1.46505 * 109.46758 * 270.01743 * 10 9 8 12 12 C 1.36941 * 119.99961 * 269.99868 * 11 10 9 13 13 H 1.08003 * 119.99299 * 141.50272 * 12 11 10 14 14 C 1.38810 * 120.00189 * 321.50424 * 12 11 10 15 15 N 1.31616 * 120.00060 * 339.42553 * 14 12 11 16 16 Si 1.86802 * 119.99840 * 159.41994 * 14 12 11 17 17 H 1.48495 * 109.46857 * 89.99801 * 16 14 12 18 18 H 1.48497 * 109.47166 * 210.00303 * 16 14 12 19 19 H 1.48496 * 109.46995 * 330.00091 * 16 14 12 20 20 C 1.46497 * 119.99832 * 90.00491 * 11 10 9 21 21 C 1.54267 * 110.03086 * 242.55425 * 20 11 10 22 22 C 1.54968 * 104.16163 * 217.13701 * 21 20 11 23 23 C 1.54885 * 102.77595 * 37.88633 * 22 21 20 24 24 C 1.53877 * 110.03359 * 125.33840 * 20 11 10 25 25 C 1.38278 * 120.14791 * 359.78938 * 9 8 7 26 26 C 1.38108 * 120.07696 * 359.97438 * 25 9 8 27 27 H 1.09000 * 109.47480 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47334 * 300.00141 * 1 2 3 29 29 H 1.08997 * 109.47275 * 60.00100 * 1 2 3 30 30 H 1.09002 * 109.46862 * 240.00069 * 2 1 3 31 31 H 1.09004 * 109.46928 * 119.99908 * 2 1 3 32 32 H 1.09000 * 109.46962 * 30.00645 * 4 3 2 33 33 H 1.09003 * 109.47148 * 149.99785 * 4 3 2 34 34 H 1.08996 * 109.47315 * 60.00398 * 5 4 3 35 35 H 1.09006 * 109.46984 * 179.97438 * 5 4 3 36 36 H 1.08993 * 109.47134 * 299.99920 * 5 4 3 37 37 H 1.07997 * 120.03502 * 0.02562 * 7 6 3 38 38 H 1.07997 * 119.96290 * 180.22747 * 8 7 6 39 39 H 1.08997 * 109.47653 * 30.01507 * 10 9 8 40 40 H 1.09003 * 109.47083 * 150.02111 * 10 9 8 41 41 H 0.97001 * 119.99794 * 175.04624 * 15 14 12 42 42 H 1.09007 * 110.02044 * 3.94788 * 20 11 10 43 43 H 1.08993 * 110.48997 * 335.78637 * 21 20 11 44 44 H 1.08999 * 110.48536 * 98.43013 * 21 20 11 45 45 H 1.09001 * 110.71858 * 279.57545 * 22 21 20 46 46 H 1.08998 * 110.92210 * 156.30087 * 22 21 20 47 47 H 1.09001 * 110.48670 * 203.40231 * 23 22 21 48 48 H 1.09004 * 110.59537 * 80.82094 * 23 22 21 49 49 H 1.09004 * 110.03468 * 238.56655 * 24 20 11 50 50 H 1.09000 * 110.03109 * 359.95277 * 24 20 11 51 51 H 1.08002 * 119.96513 * 179.97438 * 25 9 8 52 52 H 1.08000 * 120.04002 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2511 2.0397 1.2096 7 6 2.0147 1.3882 2.4135 8 6 2.2500 2.0407 3.6077 9 6 2.7114 3.3444 3.6059 10 6 2.9621 4.0549 4.9110 11 7 1.7411 4.7457 5.3333 12 6 1.5130 6.0367 4.9377 13 1 0.5147 6.3517 4.6720 14 6 2.5649 6.9405 4.8783 15 7 3.6674 6.7130 5.5602 16 14 2.4158 8.4796 3.8302 17 1 1.8428 9.5802 4.6460 18 1 3.7598 8.8758 3.3385 19 1 1.5262 8.2062 2.6731 20 6 0.7641 4.0552 6.1789 21 6 -0.5799 3.9226 5.4333 22 6 -1.6478 4.1234 6.5381 23 6 -1.0187 5.2253 7.4264 24 6 0.4854 4.8827 7.4458 25 6 2.9428 3.9976 2.4093 26 6 2.7142 3.3493 1.2114 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.8745 0.7622 -1.8408 35 1 3.8890 2.3448 -2.6546 36 1 4.3882 2.2154 -0.9508 37 1 1.6508 0.3714 2.4156 38 1 2.0699 1.5337 4.5440 39 1 3.2498 3.3284 5.6709 40 1 3.7641 4.7816 4.7808 41 1 4.4289 7.3060 5.4631 42 1 1.1384 3.0686 6.4522 43 1 -0.6707 4.6956 4.6702 44 1 -0.6727 2.9323 4.9874 45 1 -1.7920 3.2046 7.1065 46 1 -2.5910 4.4634 6.1106 47 1 -1.4322 5.1852 8.4341 48 1 -1.1801 6.2100 6.9878 49 1 0.7236 4.2975 8.3341 50 1 1.0776 5.7977 7.4320 51 1 3.3027 5.0159 2.4113 52 1 2.8947 3.8602 0.2771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769466943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:53 Heat of formation + Delta-G solvation = 29.001884 kcal Electronic energy + Delta-G solvation = -27713.456972 eV Core-core repulsion = 24291.346625 eV Total energy + Delta-G solvation = -3422.110347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60075 -39.29736 -37.75985 -35.81142 -33.34796 -33.17392 -31.78598 -31.29648 -29.40507 -29.28443 -28.10687 -26.77019 -24.87310 -24.30222 -22.75084 -22.66879 -21.35427 -20.73195 -20.65630 -18.45573 -17.95741 -17.09517 -16.81978 -16.45818 -16.03697 -15.87184 -15.43716 -15.30795 -14.98586 -14.83488 -14.59928 -14.41190 -14.12165 -14.01753 -13.84756 -13.42020 -13.25788 -13.12756 -12.95768 -12.79755 -12.76777 -12.69462 -12.52959 -12.16895 -12.05054 -11.90828 -11.86045 -11.78859 -11.74325 -11.69505 -11.62302 -11.31031 -11.21614 -11.12486 -10.44945 -10.36608 -9.62660 -8.44838 -7.95152 -7.68689 -5.34375 0.72856 0.91055 1.41946 1.45991 1.53863 2.31760 2.55159 3.12207 3.34516 3.84833 3.99107 4.01215 4.02577 4.07293 4.23887 4.28378 4.31574 4.36835 4.49961 4.54882 4.56380 4.62848 4.65360 4.71723 4.76586 4.80631 4.83993 4.88399 4.96447 4.97651 5.00885 5.01398 5.03210 5.07880 5.15961 5.25784 5.26664 5.32526 5.35934 5.36953 5.41314 5.54347 5.61236 5.65345 5.69593 5.71536 5.79417 5.89315 6.15717 6.22531 6.57010 6.59197 6.76133 7.28139 7.99173 8.51910 9.21853 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.004512 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.555880 B = 6204.054894 C = 7623.455431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 N -0.633 5.633 4 C 0.117 3.883 5 C -0.164 4.164 6 C 0.204 3.796 7 C -0.196 4.196 8 C -0.075 4.075 9 C -0.141 4.141 10 C 0.188 3.812 11 N -0.580 5.580 12 C -0.227 4.227 13 H 0.044 0.956 14 C -0.030 4.030 15 N -0.913 5.913 16 Si 0.932 3.068 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.278 1.278 20 C 0.166 3.834 21 C -0.125 4.125 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.073 4.073 26 C -0.204 4.204 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.027 0.973 40 H 0.063 0.937 41 H 0.247 0.753 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.055 0.945 50 H 0.040 0.960 51 H 0.087 0.913 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 -14.618 -10.281 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.346 5.346 4 C -0.006 4.006 5 C -0.223 4.223 6 C 0.103 3.897 7 C -0.219 4.219 8 C -0.095 4.095 9 C -0.145 4.145 10 C 0.062 3.938 11 N -0.299 5.299 12 C -0.358 4.358 13 H 0.062 0.938 14 C -0.227 4.227 15 N -0.558 5.558 16 Si 0.761 3.239 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.060 3.940 21 C -0.164 4.164 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.168 4.168 25 C -0.093 4.093 26 C -0.227 4.227 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.106 0.894 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.644 -14.575 -10.356 18.750 hybrid contribution 0.452 1.555 -0.366 1.660 sum -5.192 -13.020 -10.722 17.648 Atomic orbital electron populations 1.22179 0.96320 1.02523 1.01462 1.21470 0.94005 0.81671 1.03226 1.46688 1.71957 1.13709 1.02197 1.21431 0.96881 0.97319 0.84956 1.22159 0.96623 1.02264 1.01253 1.17717 0.94265 0.91069 0.86670 1.20727 1.09459 1.00989 0.90679 1.20817 0.97268 0.93714 0.97661 1.20650 1.02414 0.94864 0.96555 1.19675 0.90961 0.93514 0.89636 1.44029 1.20666 1.09999 1.55208 1.18827 0.93912 0.86401 1.36617 0.93812 1.25554 0.98240 0.98884 0.99998 1.70170 1.05210 1.40004 1.40380 0.85845 0.76564 0.81665 0.79824 1.21392 1.21815 1.20353 1.21219 0.89685 0.93610 0.89505 1.22679 0.95946 0.99843 0.97939 1.22404 0.97267 0.98760 0.96443 1.22205 0.94842 0.98230 0.99729 1.22465 0.96536 0.99992 0.97816 1.20693 0.98070 0.97901 0.92595 1.20666 1.09497 0.94891 0.97613 0.90114 0.94260 0.92792 0.89220 0.90835 0.89190 0.91989 0.92045 0.90525 0.94344 0.84634 0.86379 0.95426 0.91915 0.94388 0.92829 0.94049 0.92532 0.90239 0.91454 0.90783 0.93807 0.92631 0.94083 0.89429 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 71.98 0.74 -2.02 16 2 C 0.12 2.07 5.87 86.38 0.51 2.58 16 3 N -0.63 -14.81 2.61 -697.30 -1.82 -16.63 16 4 C 0.12 2.29 5.88 86.38 0.51 2.80 16 5 C -0.16 -2.93 10.24 71.98 0.74 -2.19 16 6 C 0.20 6.32 6.55 38.22 0.25 6.57 16 7 C -0.20 -6.09 9.21 22.40 0.21 -5.88 16 8 C -0.08 -2.70 9.69 22.25 0.22 -2.49 16 9 C -0.14 -5.99 5.46 -19.84 -0.11 -6.09 16 10 C 0.19 9.08 5.40 85.63 0.46 9.54 16 11 N -0.58 -28.58 2.36 -678.30 -1.60 -30.18 16 12 C -0.23 -12.31 7.75 84.03 0.65 -11.66 16 13 H 0.04 2.47 6.94 -2.91 -0.02 2.45 16 14 C -0.03 -1.67 4.97 84.86 0.42 -1.25 16 15 N -0.91 -53.42 11.48 21.65 0.25 -53.17 16 16 Si 0.93 45.51 29.60 68.60 2.03 47.54 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 C 0.17 6.96 3.42 45.72 0.16 7.12 16 21 C -0.12 -4.65 6.43 31.70 0.20 -4.45 16 22 C -0.11 -3.36 6.91 31.91 0.22 -3.14 16 23 C -0.11 -3.80 6.83 31.67 0.22 -3.58 16 24 C -0.13 -5.23 6.24 31.32 0.20 -5.04 16 25 C -0.07 -3.11 9.69 22.25 0.22 -2.89 16 26 C -0.20 -7.27 9.21 22.40 0.21 -7.06 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.17 8.07 -2.39 -0.02 1.16 16 31 H 0.07 1.29 6.21 -2.38 -0.01 1.28 16 32 H 0.09 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.06 1.37 6.20 -2.39 -0.01 1.36 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.14 3.43 6.15 -2.91 -0.02 3.41 16 38 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.03 1.28 7.85 -2.39 -0.02 1.26 16 40 H 0.06 3.49 5.50 -2.39 -0.01 3.48 16 41 H 0.25 14.12 8.32 -92.71 -0.77 13.35 16 42 H 0.05 2.13 7.81 -2.38 -0.02 2.11 16 43 H 0.04 1.79 6.64 -2.39 -0.02 1.77 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 48 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 49 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.04 2.03 7.17 -2.39 -0.02 2.02 16 51 H 0.09 4.13 8.06 -2.91 -0.02 4.11 16 52 H 0.12 3.89 6.14 -2.91 -0.02 3.88 16 Total: -1.00 -62.85 402.24 5.72 -57.13 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.86 Total: 24.46 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 6.00 Total: -29.15 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -3.17 Total: -99.98 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -62.85 5.72 -57.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769466943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.127 kcal (2) G-P(sol) polarization free energy of solvation -62.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds