Wall clock time and date at job start Tue Mar 31 2020 10:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47575 * 2 1 4 4 C 1.52999 * 110.28983 * 60.66976 * 3 2 1 5 5 C 1.54266 * 110.32247 * 298.54392 * 3 2 1 6 6 C 1.54377 * 105.06190 * 241.00140 * 5 3 2 7 7 N 1.48562 * 104.59407 * 336.14868 * 6 5 3 8 8 C 1.46895 * 111.00142 * 159.03785 * 7 6 5 9 9 C 1.50703 * 109.47036 * 74.57853 * 8 7 6 10 10 C 1.38280 * 119.92903 * 269.72886 * 9 8 7 11 11 C 1.38099 * 120.07859 * 179.72585 * 10 9 8 12 12 C 1.38909 * 119.92512 * 0.54269 * 11 10 9 13 13 N 1.39675 * 120.08039 * 179.70403 * 12 11 10 14 14 C 1.46499 * 120.00248 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99600 * 0.02619 * 13 12 11 16 16 C 1.50709 * 109.46911 * 89.99892 * 15 13 12 17 17 H 1.07996 * 120.00240 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99553 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99318 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00124 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47190 * 90.00224 * 20 18 16 22 22 H 1.48498 * 109.47374 * 209.99998 * 20 18 16 23 23 H 1.48496 * 109.47391 * 329.99998 * 20 18 16 24 24 C 1.38912 * 119.84962 * 359.73278 * 12 11 10 25 25 C 1.38109 * 119.92663 * 359.97438 * 24 12 11 26 26 C 1.48562 * 104.22433 * 39.48055 * 7 6 5 27 27 H 1.09000 * 109.47362 * 300.00482 * 1 2 3 28 28 H 1.09006 * 109.46857 * 59.99809 * 1 2 3 29 29 H 1.09000 * 109.47718 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46914 * 239.99376 * 2 1 3 31 31 H 1.09006 * 109.46857 * 120.00190 * 2 1 3 32 32 H 1.09002 * 109.47284 * 299.32896 * 4 3 2 33 33 H 1.08997 * 109.47078 * 59.32527 * 4 3 2 34 34 H 1.08997 * 109.47132 * 179.33217 * 4 3 2 35 35 H 1.09005 * 110.32054 * 359.90055 * 5 3 2 36 36 H 1.09003 * 110.32265 * 122.10294 * 5 3 2 37 37 H 1.09000 * 110.40820 * 94.92490 * 6 5 3 38 38 H 1.08989 * 110.41015 * 217.36711 * 6 5 3 39 39 H 1.09001 * 109.47512 * 194.57738 * 8 7 6 40 40 H 1.09000 * 109.47060 * 314.58314 * 8 7 6 41 41 H 1.08007 * 119.95960 * 359.97438 * 10 9 8 42 42 H 1.08006 * 120.04129 * 180.27869 * 11 10 9 43 43 H 1.09004 * 109.46850 * 90.00280 * 14 13 12 44 44 H 1.08993 * 109.47075 * 209.99996 * 14 13 12 45 45 H 1.09000 * 109.47080 * 330.00669 * 14 13 12 46 46 H 1.08999 * 109.46960 * 209.99473 * 15 13 12 47 47 H 1.08999 * 109.47479 * 330.00050 * 15 13 12 48 48 H 0.97003 * 119.99530 * 179.97438 * 19 18 16 49 49 H 1.07997 * 120.04072 * 179.97438 * 24 12 11 50 50 H 1.07991 * 119.96960 * 180.02562 * 25 24 12 51 51 H 1.08998 * 110.41528 * 201.73764 * 26 7 6 52 52 H 1.08997 * 110.50874 * 79.34552 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5542 2.1770 1.2511 5 6 1.5670 2.1780 -1.2708 6 6 2.8628 2.5863 -2.0038 7 7 3.8968 2.6336 -0.9380 8 6 5.2457 2.5170 -1.5077 9 6 5.6240 3.8152 -2.1730 10 6 5.3331 4.0158 -3.5099 11 6 5.6732 5.2064 -4.1212 12 6 6.3186 6.1989 -3.3945 13 7 6.6696 7.4020 -4.0112 14 6 7.3507 8.4473 -3.2433 15 6 6.3568 7.6184 -5.4259 16 6 4.9918 8.2456 -5.5483 17 1 4.4150 8.4609 -4.6611 18 6 4.4796 8.5444 -6.7931 19 7 3.2883 9.0911 -6.8998 20 14 5.4777 8.1725 -8.3276 21 1 5.1638 6.8007 -8.8019 22 1 5.1372 9.1533 -9.3893 23 1 6.9255 8.2679 -8.0116 24 6 6.6145 5.9920 -2.0531 25 6 6.2661 4.8013 -1.4464 26 6 3.5820 1.4682 -0.0721 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.4644 2.1952 1.2615 33 1 1.9174 1.6606 2.1396 34 1 1.9346 3.1984 1.2434 35 1 0.9729 1.5108 -1.8953 36 1 0.9886 3.0623 -1.0032 37 1 3.1253 1.8416 -2.7553 38 1 2.7462 3.5674 -2.4641 39 1 5.9579 2.2951 -0.7129 40 1 5.2610 1.7135 -2.2440 41 1 4.8356 3.2418 -4.0756 42 1 5.4417 5.3642 -5.1643 43 1 8.4292 8.3067 -3.3152 44 1 7.0842 9.4250 -3.6447 45 1 7.0454 8.3880 -2.1986 46 1 7.1019 8.2815 -5.8655 47 1 6.3660 6.6630 -5.9504 48 1 2.9280 9.3017 -7.7755 49 1 7.1165 6.7614 -1.4853 50 1 6.4954 4.6399 -0.4035 51 1 4.0068 1.6075 0.9220 52 1 3.9571 0.5477 -0.5194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769518782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:59 Heat of formation + Delta-G solvation = 28.598626 kcal Electronic energy + Delta-G solvation = -26655.631374 eV Core-core repulsion = 23233.503540 eV Total energy + Delta-G solvation = -3422.127834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86779 -38.85583 -36.23792 -34.75460 -32.62952 -31.18690 -30.53246 -29.60341 -29.27458 -28.30180 -26.69893 -25.47903 -23.99260 -23.18018 -22.31360 -21.35834 -20.88654 -19.57884 -18.70632 -16.93277 -16.66938 -15.89171 -15.78977 -15.22586 -14.86534 -14.44454 -14.38101 -14.11055 -13.82056 -13.72292 -13.61496 -13.29909 -13.19170 -12.93900 -12.74091 -12.37967 -12.23566 -12.16183 -11.93999 -11.83606 -11.59791 -11.45783 -11.42588 -11.32966 -11.07030 -10.99479 -10.79250 -10.60203 -10.54729 -10.48994 -10.44989 -10.23025 -10.02544 -9.57596 -8.88270 -8.65489 -8.36931 -8.26313 -6.38530 -6.14048 -4.13858 2.09652 2.21178 3.21418 3.29334 3.30130 4.03767 4.10361 4.32443 4.39547 4.56106 4.57840 4.76321 4.99449 5.10022 5.16232 5.16339 5.20541 5.28719 5.35710 5.45942 5.46276 5.50993 5.57540 5.61052 5.68599 5.72796 5.74222 5.77288 5.78807 5.82693 5.92580 5.97750 5.98819 6.03392 6.06080 6.16192 6.22298 6.25121 6.29674 6.35133 6.39621 6.57480 6.75160 6.76644 6.90657 7.03886 7.07973 7.15272 7.30774 7.53489 7.56337 8.06479 8.36220 8.52465 8.94078 9.45867 10.99009 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.002904 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.679369 B = 9639.629984 C =10617.527526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.065 4.065 4 C -0.134 4.134 5 C -0.117 4.117 6 C 0.035 3.965 7 N -0.501 5.501 8 C 0.100 3.900 9 C -0.160 4.160 10 C -0.066 4.066 11 C -0.187 4.187 12 C 0.240 3.760 13 N -0.612 5.612 14 C 0.099 3.901 15 C 0.221 3.779 16 C -0.534 4.534 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.218 4.218 25 C -0.053 4.053 26 C 0.039 3.961 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.265 0.735 49 H 0.114 0.886 50 H 0.109 0.891 51 H 0.077 0.923 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -16.621 13.746 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.065 4.065 4 C -0.192 4.192 5 C -0.155 4.155 6 C -0.093 4.093 7 N -0.225 5.225 8 C -0.028 4.028 9 C -0.163 4.163 10 C -0.085 4.085 11 C -0.210 4.210 12 C 0.134 3.866 13 N -0.318 5.318 14 C -0.045 4.045 15 C 0.100 3.900 16 C -0.572 4.572 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.241 4.241 25 C -0.072 4.072 26 C -0.089 4.089 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.132 0.868 50 H 0.127 0.873 51 H 0.096 0.904 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.731 -15.825 13.787 21.001 hybrid contribution 0.356 -0.735 -1.448 1.663 sum 1.086 -16.560 12.338 20.680 Atomic orbital electron populations 1.21862 0.95764 1.01305 1.02268 1.21587 0.96080 0.95520 1.01638 1.21301 0.94354 0.94843 0.96031 1.21864 1.00665 1.00735 0.95900 1.22503 0.97272 1.00088 0.95648 1.23127 0.91227 1.01565 0.93414 1.65452 1.01909 1.38549 1.16557 1.20977 0.90233 0.94442 0.97112 1.19113 1.06435 0.96760 0.94016 1.20628 0.97693 0.96254 0.93923 1.20769 1.05357 0.93793 1.01057 1.17903 0.91362 0.86055 0.91298 1.46698 1.61002 1.12844 1.11267 1.21485 0.95121 0.91872 0.96017 1.19648 0.96689 0.96429 0.77281 1.21489 1.00514 1.40681 0.94542 0.90550 1.24902 0.94783 0.94604 0.98753 1.69906 1.16581 1.42500 1.24292 0.86916 0.81080 0.78707 0.83426 1.19930 1.20964 1.19029 1.20556 1.10441 0.99256 0.93837 1.20483 0.96327 0.92396 0.97997 1.23213 0.94811 0.92426 0.98422 0.92398 0.92389 0.93091 0.92227 0.92084 0.92657 0.93101 0.91776 0.91349 0.90919 0.94243 0.89608 0.90957 0.94647 0.87540 0.85537 0.94591 0.91313 0.92372 0.95488 0.95554 0.92529 0.86822 0.87291 0.90431 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.35 37.16 0.35 -0.79 16 2 C -0.11 -0.87 4.78 -26.74 -0.13 -1.00 16 3 C -0.06 -0.60 0.76 -153.13 -0.12 -0.72 16 4 C -0.13 -1.21 7.87 37.16 0.29 -0.92 16 5 C -0.12 -1.24 5.76 -25.35 -0.15 -1.39 16 6 C 0.03 0.44 5.71 -2.18 -0.01 0.42 16 7 N -0.50 -6.37 5.33 -231.42 -1.23 -7.60 16 8 C 0.10 1.28 4.98 -4.98 -0.02 1.26 16 9 C -0.16 -2.51 5.19 -104.58 -0.54 -3.05 16 10 C -0.07 -1.12 8.94 -39.62 -0.35 -1.48 16 11 C -0.19 -3.75 9.21 -39.38 -0.36 -4.11 16 12 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 13 N -0.61 -12.92 2.99 -181.00 -0.54 -13.46 16 14 C 0.10 1.72 10.19 59.85 0.61 2.33 16 15 C 0.22 5.23 3.98 -5.19 -0.02 5.20 16 16 C -0.53 -14.89 9.94 -34.43 -0.34 -15.23 16 17 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 20 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 24 C -0.22 -3.82 9.21 -39.38 -0.36 -4.18 16 25 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 26 C 0.04 0.40 5.55 -2.18 -0.01 0.39 16 27 H 0.06 0.41 6.53 -51.93 -0.34 0.07 16 28 H 0.06 0.44 6.60 -51.93 -0.34 0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.66 6.50 -51.93 -0.34 0.32 16 36 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 37 H 0.04 0.48 7.75 -51.93 -0.40 0.08 16 38 H 0.09 1.28 7.90 -51.93 -0.41 0.87 16 39 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 40 H 0.04 0.44 7.71 -51.93 -0.40 0.04 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.13 2.72 6.14 -52.48 -0.32 2.40 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.06 0.91 6.20 -51.93 -0.32 0.59 16 46 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 47 H 0.03 0.62 5.63 -51.93 -0.29 0.33 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.11 1.80 6.14 -52.49 -0.32 1.47 16 50 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 51 H 0.08 0.77 7.86 -51.93 -0.41 0.36 16 52 H 0.04 0.39 7.71 -51.93 -0.40 -0.01 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -29.97 395.10 -11.14 -41.11 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -9.22 Total: 2.42 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -2.21 Total: -18.25 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -1.00 Total: -47.33 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.97 -11.14 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769518782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.710 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds