Wall clock time and date at job start Tue Mar 31 2020 10:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47575 * 2 1 4 4 C 1.52999 * 110.28983 * 60.66976 * 3 2 1 5 5 C 1.54266 * 110.32247 * 298.54392 * 3 2 1 6 6 C 1.54377 * 105.06190 * 241.00140 * 5 3 2 7 7 N 1.48562 * 104.59407 * 336.14868 * 6 5 3 8 8 C 1.46895 * 111.00142 * 159.03785 * 7 6 5 9 9 C 1.50703 * 109.47036 * 74.57853 * 8 7 6 10 10 C 1.38280 * 119.92903 * 269.72886 * 9 8 7 11 11 C 1.38099 * 120.07859 * 179.72585 * 10 9 8 12 12 C 1.38909 * 119.92512 * 0.54269 * 11 10 9 13 13 N 1.39675 * 120.08039 * 179.70403 * 12 11 10 14 14 C 1.46499 * 120.00248 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99600 * 0.02619 * 13 12 11 16 16 C 1.50709 * 109.46911 * 89.99892 * 15 13 12 17 17 H 1.07996 * 120.00240 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99553 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99318 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00124 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47190 * 90.00224 * 20 18 16 22 22 H 1.48498 * 109.47374 * 209.99998 * 20 18 16 23 23 H 1.48496 * 109.47391 * 329.99998 * 20 18 16 24 24 C 1.38912 * 119.84962 * 359.73278 * 12 11 10 25 25 C 1.38109 * 119.92663 * 359.97438 * 24 12 11 26 26 C 1.48562 * 104.22433 * 39.48055 * 7 6 5 27 27 H 1.09000 * 109.47362 * 300.00482 * 1 2 3 28 28 H 1.09006 * 109.46857 * 59.99809 * 1 2 3 29 29 H 1.09000 * 109.47718 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46914 * 239.99376 * 2 1 3 31 31 H 1.09006 * 109.46857 * 120.00190 * 2 1 3 32 32 H 1.09002 * 109.47284 * 299.32896 * 4 3 2 33 33 H 1.08997 * 109.47078 * 59.32527 * 4 3 2 34 34 H 1.08997 * 109.47132 * 179.33217 * 4 3 2 35 35 H 1.09005 * 110.32054 * 359.90055 * 5 3 2 36 36 H 1.09003 * 110.32265 * 122.10294 * 5 3 2 37 37 H 1.09000 * 110.40820 * 94.92490 * 6 5 3 38 38 H 1.08989 * 110.41015 * 217.36711 * 6 5 3 39 39 H 1.09001 * 109.47512 * 194.57738 * 8 7 6 40 40 H 1.09000 * 109.47060 * 314.58314 * 8 7 6 41 41 H 1.08007 * 119.95960 * 359.97438 * 10 9 8 42 42 H 1.08006 * 120.04129 * 180.27869 * 11 10 9 43 43 H 1.09004 * 109.46850 * 90.00280 * 14 13 12 44 44 H 1.08993 * 109.47075 * 209.99996 * 14 13 12 45 45 H 1.09000 * 109.47080 * 330.00669 * 14 13 12 46 46 H 1.08999 * 109.46960 * 209.99473 * 15 13 12 47 47 H 1.08999 * 109.47479 * 330.00050 * 15 13 12 48 48 H 0.97003 * 119.99530 * 179.97438 * 19 18 16 49 49 H 1.07997 * 120.04072 * 179.97438 * 24 12 11 50 50 H 1.07991 * 119.96960 * 180.02562 * 25 24 12 51 51 H 1.08998 * 110.41528 * 201.73764 * 26 7 6 52 52 H 1.08997 * 110.50874 * 79.34552 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5542 2.1770 1.2511 5 6 1.5670 2.1780 -1.2708 6 6 2.8628 2.5863 -2.0038 7 7 3.8968 2.6336 -0.9380 8 6 5.2457 2.5170 -1.5077 9 6 5.6240 3.8152 -2.1730 10 6 5.3331 4.0158 -3.5099 11 6 5.6732 5.2064 -4.1212 12 6 6.3186 6.1989 -3.3945 13 7 6.6696 7.4020 -4.0112 14 6 7.3507 8.4473 -3.2433 15 6 6.3568 7.6184 -5.4259 16 6 4.9918 8.2456 -5.5483 17 1 4.4150 8.4609 -4.6611 18 6 4.4796 8.5444 -6.7931 19 7 3.2883 9.0911 -6.8998 20 14 5.4777 8.1725 -8.3276 21 1 5.1638 6.8007 -8.8019 22 1 5.1372 9.1533 -9.3893 23 1 6.9255 8.2679 -8.0116 24 6 6.6145 5.9920 -2.0531 25 6 6.2661 4.8013 -1.4464 26 6 3.5820 1.4682 -0.0721 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.4644 2.1952 1.2615 33 1 1.9174 1.6606 2.1396 34 1 1.9346 3.1984 1.2434 35 1 0.9729 1.5108 -1.8953 36 1 0.9886 3.0623 -1.0032 37 1 3.1253 1.8416 -2.7553 38 1 2.7462 3.5674 -2.4641 39 1 5.9579 2.2951 -0.7129 40 1 5.2610 1.7135 -2.2440 41 1 4.8356 3.2418 -4.0756 42 1 5.4417 5.3642 -5.1643 43 1 8.4292 8.3067 -3.3152 44 1 7.0842 9.4250 -3.6447 45 1 7.0454 8.3880 -2.1986 46 1 7.1019 8.2815 -5.8655 47 1 6.3660 6.6630 -5.9504 48 1 2.9280 9.3017 -7.7755 49 1 7.1165 6.7614 -1.4853 50 1 6.4954 4.6399 -0.4035 51 1 4.0068 1.6075 0.9220 52 1 3.9571 0.5477 -0.5194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769518782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:58 Heat of formation + Delta-G solvation = 12.381788 kcal Electronic energy + Delta-G solvation = -26656.334588 eV Core-core repulsion = 23233.503540 eV Total energy + Delta-G solvation = -3422.831049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87086 -40.13043 -37.59426 -35.82660 -34.68748 -32.26666 -31.99821 -30.51422 -30.40057 -29.93963 -27.73116 -26.68118 -25.41040 -23.96986 -23.75736 -22.85712 -21.92745 -20.99286 -19.50418 -19.08986 -18.14081 -16.92023 -16.81572 -16.65896 -16.16316 -15.92536 -15.37483 -15.31655 -14.99621 -14.90760 -14.68796 -14.57006 -14.37362 -14.34923 -14.15587 -13.74294 -13.38555 -13.23734 -13.12351 -12.99073 -12.82755 -12.68561 -12.65500 -12.42752 -12.30416 -12.21255 -12.05181 -11.93889 -11.85576 -11.74176 -11.45464 -11.28295 -11.27156 -11.24120 -10.83433 -10.40060 -9.67445 -9.33098 -8.34450 -7.91009 -6.39772 0.69560 0.82949 1.32996 1.33840 1.44652 2.29372 2.53730 2.95264 2.99395 3.38932 3.62813 3.74620 3.94520 4.03274 4.12824 4.22235 4.27274 4.34982 4.36790 4.43928 4.44481 4.53671 4.61009 4.67480 4.68984 4.72770 4.75962 4.78293 4.81295 4.83848 4.89412 4.90966 4.94581 5.03223 5.04175 5.07914 5.15742 5.20217 5.22895 5.25988 5.29045 5.33435 5.44644 5.51377 5.57804 5.60819 5.64781 5.87429 6.05696 6.08504 6.15424 6.24110 6.59143 6.69151 6.86699 7.25634 8.83131 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.002904 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.679369 B = 9639.629984 C =10617.527526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.061 4.061 4 C -0.131 4.131 5 C -0.115 4.115 6 C 0.034 3.966 7 N -0.516 5.516 8 C 0.103 3.897 9 C -0.151 4.151 10 C -0.068 4.068 11 C -0.216 4.216 12 C 0.210 3.790 13 N -0.629 5.629 14 C 0.097 3.903 15 C 0.232 3.768 16 C -0.536 4.536 17 H 0.023 0.977 18 C 0.012 3.988 19 N -0.946 5.946 20 Si 0.947 3.053 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.243 1.243 24 C -0.216 4.216 25 C -0.052 4.052 26 C 0.041 3.959 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.028 0.972 48 H 0.268 0.732 49 H 0.132 0.868 50 H 0.140 0.860 51 H 0.086 0.914 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 -19.074 15.120 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.061 4.061 4 C -0.189 4.189 5 C -0.153 4.153 6 C -0.094 4.094 7 N -0.240 5.240 8 C -0.025 4.025 9 C -0.153 4.153 10 C -0.087 4.087 11 C -0.239 4.239 12 C 0.106 3.894 13 N -0.338 5.338 14 C -0.046 4.046 15 C 0.110 3.890 16 C -0.575 4.575 17 H 0.041 0.959 18 C -0.186 4.186 19 N -0.586 5.586 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.166 1.166 24 C -0.239 4.239 25 C -0.071 4.071 26 C -0.086 4.086 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.136 0.864 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.077 0.923 49 H 0.150 0.850 50 H 0.158 0.842 51 H 0.104 0.896 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.294 -18.299 15.206 23.903 hybrid contribution -0.227 -0.024 -1.717 1.732 sum 2.067 -18.324 13.490 22.847 Atomic orbital electron populations 1.21858 0.95417 1.01858 1.02050 1.21551 0.96337 0.94274 1.02187 1.21295 0.93890 0.95719 0.95223 1.21830 1.01004 0.99709 0.96315 1.22488 0.96277 1.00059 0.96479 1.23050 0.92568 0.99923 0.93838 1.65381 1.01622 1.40313 1.16656 1.20984 0.90869 0.92793 0.97812 1.19484 1.04610 0.97952 0.93286 1.20786 0.97415 0.95557 0.94946 1.20755 1.07287 0.95546 1.00269 1.18189 0.92688 0.85920 0.92582 1.46690 1.62302 1.14179 1.10587 1.21628 0.96353 0.90322 0.96247 1.19329 0.94108 0.95948 0.79662 1.21664 1.02207 1.40753 0.92862 0.95867 1.25880 0.95913 0.94185 1.02655 1.70073 1.18833 1.44267 1.25420 0.85727 0.80334 0.78715 0.78300 1.19058 1.20472 1.16638 1.20815 1.09942 1.00384 0.92723 1.20869 0.95276 0.91564 0.99353 1.23269 0.95349 0.91758 0.98238 0.92204 0.93050 0.92177 0.92242 0.90943 0.92161 0.91758 0.93649 0.90394 0.92056 0.93807 0.92815 0.88906 0.93864 0.86397 0.88216 0.91936 0.92600 0.90895 0.94613 0.95379 0.92311 0.84996 0.84244 0.89575 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.35 71.98 0.67 -1.26 16 2 C -0.11 -1.39 4.78 30.59 0.15 -1.25 16 3 C -0.06 -1.01 0.76 -51.29 -0.04 -1.05 16 4 C -0.13 -2.13 7.87 71.98 0.57 -1.56 16 5 C -0.12 -2.36 5.76 31.49 0.18 -2.18 16 6 C 0.03 0.85 5.71 86.45 0.49 1.35 16 7 N -0.52 -12.18 5.33 -886.07 -4.72 -16.89 16 8 C 0.10 2.38 4.98 85.56 0.43 2.81 16 9 C -0.15 -4.48 5.19 -19.84 -0.10 -4.58 16 10 C -0.07 -2.33 8.94 22.25 0.20 -2.13 16 11 C -0.22 -8.95 9.21 22.40 0.21 -8.74 16 12 C 0.21 8.59 6.55 38.21 0.25 8.84 16 13 N -0.63 -26.99 2.99 -726.55 -2.17 -29.16 16 14 C 0.10 3.33 10.19 127.77 1.30 4.64 16 15 C 0.23 11.21 3.98 85.64 0.34 11.55 16 16 C -0.54 -31.36 9.94 25.60 0.25 -31.10 16 17 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 18 C 0.01 0.68 5.47 84.66 0.46 1.14 16 19 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 20 Si 0.95 43.42 27.47 68.60 1.88 45.31 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 24 C -0.22 -7.30 9.21 22.40 0.21 -7.10 16 25 C -0.05 -1.53 9.69 22.25 0.22 -1.31 16 26 C 0.04 0.74 5.55 86.45 0.48 1.22 16 27 H 0.06 0.72 6.53 -2.39 -0.02 0.71 16 28 H 0.05 0.70 6.60 -2.38 -0.02 0.69 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.91 6.56 -2.39 -0.02 0.89 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.43 6.50 -2.38 -0.02 1.41 16 36 H 0.06 1.38 7.71 -2.39 -0.02 1.36 16 37 H 0.04 1.03 7.75 -2.39 -0.02 1.01 16 38 H 0.05 1.66 7.90 -2.39 -0.02 1.64 16 39 H 0.09 1.80 8.03 -2.39 -0.02 1.78 16 40 H 0.04 0.95 7.71 -2.39 -0.02 0.93 16 41 H 0.12 3.66 8.06 -2.91 -0.02 3.63 16 42 H 0.10 4.57 6.14 -2.91 -0.02 4.55 16 43 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.06 2.01 8.07 -2.39 -0.02 2.00 16 45 H 0.07 2.23 6.20 -2.39 -0.01 2.21 16 46 H 0.04 1.66 7.13 -2.39 -0.02 1.64 16 47 H 0.03 1.35 5.63 -2.39 -0.01 1.34 16 48 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 49 H 0.13 3.89 6.14 -2.91 -0.02 3.87 16 50 H 0.14 3.29 8.06 -2.92 -0.02 3.26 16 51 H 0.09 1.42 7.86 -2.39 -0.02 1.40 16 52 H 0.05 0.81 7.71 -2.39 -0.02 0.79 16 Total: -1.00 -68.27 395.10 2.37 -65.90 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.81 Total: 24.86 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 6.26 Total: -30.72 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -6.59 Total: -105.35 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.31 kcal Total: -68.27 2.37 -65.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769518782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.283 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds