Wall clock time and date at job start Tue Mar 31 2020 11:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.01700 * 2 1 4 4 C 1.54268 * 110.03245 * 121.44372 * 2 1 3 5 5 C 1.55030 * 104.28060 * 142.80215 * 4 2 1 6 6 C 1.54888 * 102.68419 * 322.23292 * 5 4 2 7 7 H 1.08999 * 110.48529 * 279.02990 * 6 5 4 8 8 C 1.52999 * 110.48588 * 156.51584 * 6 5 4 9 9 N 1.46898 * 109.47093 * 68.24413 * 8 6 5 10 10 C 1.46899 * 111.00124 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47070 * 179.97438 * 10 9 8 12 12 C 1.38288 * 119.92407 * 90.00087 * 11 10 9 13 13 C 1.38111 * 120.07382 * 179.69843 * 12 11 10 14 14 C 1.38906 * 119.92343 * 0.28047 * 13 12 11 15 15 N 1.39676 * 120.07135 * 180.02562 * 14 13 12 16 16 C 1.46500 * 120.00296 * 359.97438 * 15 14 13 17 17 C 1.46500 * 119.99636 * 179.97438 * 15 14 13 18 18 C 1.50702 * 109.47373 * 90.00200 * 17 15 14 19 19 H 1.07994 * 119.99698 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00179 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99881 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46886 * 120.00086 * 22 20 18 25 25 H 1.48496 * 109.47179 * 239.99354 * 22 20 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 14 13 12 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 14 13 28 28 C 1.53880 * 110.03288 * 238.60760 * 2 1 3 29 29 H 1.09001 * 109.47053 * 181.39081 * 1 2 3 30 30 H 1.08997 * 109.47145 * 301.38641 * 1 2 3 31 31 H 1.08998 * 109.46872 * 61.39047 * 1 2 3 32 32 H 1.09000 * 110.48203 * 261.56916 * 4 2 1 33 33 H 1.09001 * 110.48772 * 24.21670 * 4 2 1 34 34 H 1.09003 * 110.87487 * 203.89573 * 5 4 2 35 35 H 1.09005 * 110.69937 * 80.48443 * 5 4 2 36 36 H 1.08996 * 109.47435 * 308.24206 * 8 6 5 37 37 H 1.09000 * 109.47274 * 188.23947 * 8 6 5 38 38 H 1.00897 * 111.00057 * 56.04394 * 9 8 6 39 39 H 1.09001 * 109.47298 * 60.00095 * 10 9 8 40 40 H 1.09003 * 109.47252 * 299.99696 * 10 9 8 41 41 H 1.08002 * 119.96530 * 359.97438 * 12 11 10 42 42 H 1.07999 * 120.03725 * 180.25498 * 13 12 11 43 43 H 1.08999 * 109.46842 * 90.00314 * 16 15 14 44 44 H 1.08993 * 109.47033 * 209.99976 * 16 15 14 45 45 H 1.09002 * 109.46727 * 330.00653 * 16 15 14 46 46 H 1.09003 * 109.46815 * 209.99913 * 17 15 14 47 47 H 1.08993 * 109.47537 * 329.99648 * 17 15 14 48 48 H 0.97001 * 120.00212 * 180.02562 * 21 20 18 49 49 H 1.07998 * 120.04186 * 180.02562 * 26 14 13 50 50 H 1.08002 * 119.96339 * 180.02562 * 27 26 14 51 51 H 1.09003 * 110.02692 * 121.42984 * 28 2 1 52 52 H 1.08999 * 110.07082 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7561 1.2365 5 6 3.3138 -1.5046 0.7195 6 6 2.8875 -1.9404 -0.7044 7 1 2.2778 -2.8428 -0.6606 8 6 4.1174 -2.1688 -1.5852 9 7 4.8500 -3.3487 -1.1067 10 6 6.0398 -3.5997 -1.9309 11 6 6.7643 -4.8144 -1.4106 12 6 6.4460 -6.0688 -1.8980 13 6 7.1123 -7.1835 -1.4279 14 6 8.0990 -7.0441 -0.4602 15 7 8.7751 -8.1692 0.0171 16 6 8.4436 -9.4983 -0.5025 17 6 9.8159 -8.0203 1.0373 18 6 9.1955 -8.1240 2.4068 19 1 8.1323 -8.2844 2.5071 20 6 9.9852 -8.0131 3.5316 21 7 11.2799 -7.8172 3.4094 22 14 9.2160 -8.1410 5.2290 23 1 7.7535 -8.3597 5.0946 24 1 9.8222 -9.2812 5.9625 25 1 9.4611 -6.8834 5.9796 26 6 8.4126 -5.7832 0.0311 27 6 7.7424 -4.6727 -0.4434 28 6 2.0571 -0.7531 -1.2341 29 1 -0.3633 -1.0274 0.0249 30 1 -0.3633 0.5352 0.8773 31 1 -0.3633 0.4921 -0.9022 32 1 2.3297 -0.0545 2.0254 33 1 1.3142 -1.4668 1.5960 34 1 3.5312 -2.3735 1.3406 35 1 4.1721 -0.8340 0.6774 36 1 4.7662 -1.2942 -1.5373 37 1 3.8014 -2.3307 -2.6157 38 1 4.2510 -4.1602 -1.0805 39 1 6.7021 -2.7351 -1.8858 40 1 5.7367 -3.7717 -2.9638 41 1 5.6786 -6.1765 -2.6503 42 1 6.8661 -8.1624 -1.8119 43 1 9.0683 -9.7159 -1.3688 44 1 8.6217 -10.2455 0.2708 45 1 7.3941 -9.5221 -0.7961 46 1 10.5599 -8.8074 0.9149 47 1 10.2951 -7.0474 0.9282 48 1 11.8355 -7.7396 4.2007 49 1 9.1795 -5.6713 0.7832 50 1 7.9859 -3.6919 -0.0623 51 1 2.6867 -0.0945 -1.8325 52 1 1.2234 -1.1184 -1.8337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793347655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:45 Heat of formation + Delta-G solvation = -7.996728 kcal Electronic energy + Delta-G solvation = -25729.378259 eV Core-core repulsion = 22305.663531 eV Total energy + Delta-G solvation = -3423.714728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46504 -39.66130 -37.77272 -36.19840 -34.73757 -32.73556 -31.87539 -30.96038 -29.87156 -29.55615 -27.47292 -26.33929 -25.32669 -24.04621 -23.33053 -22.99068 -21.25687 -20.96391 -20.21617 -18.64084 -18.12398 -17.00824 -16.89501 -16.56445 -16.12989 -15.81646 -15.59552 -15.34779 -15.17856 -15.08148 -14.54723 -14.39691 -14.28722 -14.21806 -14.00789 -13.81826 -13.26061 -13.19841 -13.09132 -13.03305 -12.91844 -12.67652 -12.56192 -12.54748 -12.27075 -12.02317 -11.79109 -11.72193 -11.59954 -11.52601 -11.45457 -11.38306 -11.33607 -11.18810 -10.64867 -10.40079 -9.65545 -9.19866 -8.36331 -7.79489 -6.37564 0.72348 0.85202 1.35494 1.37454 1.49700 2.34230 2.64046 3.03241 3.05942 3.48274 3.78079 3.81966 3.90611 4.07499 4.13539 4.23622 4.29866 4.41250 4.44934 4.53228 4.61244 4.64021 4.66116 4.69781 4.73356 4.74693 4.79218 4.83737 4.86249 4.89422 4.92437 4.95350 5.02770 5.07192 5.13622 5.15644 5.21174 5.21461 5.29607 5.33981 5.35547 5.46077 5.59382 5.60011 5.62183 5.67278 5.70535 5.95032 6.07124 6.17988 6.26525 6.50609 6.56883 6.83068 6.94614 7.34288 8.83126 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.002533 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.527322 B =11049.605210 C =12563.206099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.124 4.124 5 C -0.108 4.108 6 C -0.085 4.085 7 H 0.069 0.931 8 C 0.071 3.929 9 N -0.694 5.694 10 C 0.122 3.878 11 C -0.158 4.158 12 C -0.061 4.061 13 C -0.217 4.217 14 C 0.211 3.789 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.266 3.734 18 C -0.539 4.539 19 H 0.048 0.952 20 C 0.011 3.989 21 N -0.927 5.927 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.278 1.278 26 C -0.217 4.217 27 C -0.056 4.056 28 C -0.111 4.111 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.341 0.659 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.267 0.733 49 H 0.093 0.907 50 H 0.119 0.881 51 H 0.067 0.933 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.497 12.595 -12.490 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.161 4.161 5 C -0.145 4.145 6 C -0.104 4.104 7 H 0.087 0.913 8 C -0.058 4.058 9 N -0.326 5.326 10 C -0.007 4.007 11 C -0.161 4.161 12 C -0.080 4.080 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.144 3.856 18 C -0.577 4.577 19 H 0.066 0.934 20 C -0.188 4.188 21 N -0.567 5.567 22 Si 0.787 3.213 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.203 1.203 26 C -0.240 4.240 27 C -0.075 4.075 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.137 0.863 51 H 0.086 0.914 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.873 12.779 -11.853 25.691 hybrid contribution 0.089 -0.650 0.648 0.922 sum -18.784 12.129 -11.205 25.010 Atomic orbital electron populations 1.21873 0.94539 1.01746 1.01861 1.21731 0.96036 0.99241 0.94488 0.91095 1.22515 0.97275 0.98877 0.97451 1.22390 0.97110 0.99184 0.95850 1.21933 0.95207 0.98352 0.94919 0.91252 1.22007 0.94327 0.93418 0.96059 1.60473 1.09429 1.07656 1.55034 1.20588 0.91518 0.94624 0.93923 1.19534 1.00404 0.95113 1.01028 1.20922 0.97812 0.90992 0.98289 1.20784 1.00614 1.00285 1.02254 1.18234 0.91503 0.87140 0.92462 1.46956 1.39874 1.04672 1.42495 1.21600 1.01025 0.83435 0.98417 1.18777 0.85836 0.95615 0.85379 1.21787 0.94208 1.49593 0.92160 0.93376 1.25789 0.95222 0.94593 1.03190 1.70042 1.05441 1.50192 1.30983 0.85450 0.78603 0.78018 0.79276 1.19524 1.19860 1.20317 1.20779 1.05346 0.92630 1.05261 1.20778 0.94676 0.97040 0.95051 1.22230 0.99150 0.96264 0.97296 0.92818 0.92664 0.92161 0.91951 0.91847 0.92867 0.92328 0.91404 0.94620 0.84041 0.90969 0.93519 0.83950 0.84903 0.92919 0.92556 0.90311 0.97238 0.97170 0.92397 0.88868 0.86349 0.91426 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.85 71.98 0.64 -1.00 16 2 C -0.10 -1.29 3.50 -10.07 -0.04 -1.32 16 3 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -1.96 6.36 31.72 0.20 -1.76 16 5 C -0.11 -2.02 6.20 31.93 0.20 -1.83 16 6 C -0.09 -1.37 3.03 -9.72 -0.03 -1.40 16 7 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 8 C 0.07 1.20 4.97 86.30 0.43 1.63 16 9 N -0.69 -14.75 6.34 -517.94 -3.28 -18.03 16 10 C 0.12 2.70 5.81 85.56 0.50 3.19 16 11 C -0.16 -4.57 5.39 -19.84 -0.11 -4.68 16 12 C -0.06 -1.70 9.69 22.25 0.22 -1.48 16 13 C -0.22 -7.14 9.21 22.40 0.21 -6.94 16 14 C 0.21 8.77 6.55 38.21 0.25 9.02 16 15 N -0.63 -28.14 2.99 -726.58 -2.17 -30.31 16 16 C 0.10 3.44 10.19 127.77 1.30 4.75 16 17 C 0.27 14.22 4.91 85.63 0.42 14.64 16 18 C -0.54 -30.81 9.39 25.60 0.24 -30.57 16 19 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.01 0.64 5.46 84.65 0.46 1.10 16 21 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 22 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 C -0.22 -9.35 9.21 22.40 0.21 -9.15 16 27 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 28 C -0.11 -1.46 6.03 31.32 0.19 -1.27 16 29 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.01 7.84 -2.39 -0.02 0.99 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.18 8.00 -2.38 -0.02 1.16 16 36 H 0.07 1.20 8.06 -2.39 -0.02 1.18 16 37 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.34 7.09 8.72 -89.70 -0.78 6.31 16 39 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 40 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 41 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.13 3.77 6.14 -2.91 -0.02 3.75 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 45 H 0.08 2.33 6.20 -2.39 -0.01 2.32 16 46 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 47 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16 48 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 49 H 0.09 4.64 6.14 -2.91 -0.02 4.62 16 50 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 51 H 0.07 0.84 7.84 -2.39 -0.02 0.82 16 52 H 0.07 0.83 7.67 -2.39 -0.02 0.81 16 Total: -1.00 -63.52 408.51 2.44 -61.08 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.09 Total: 24.05 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 5.50 Total: -28.83 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -5.17 Total: -103.18 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.52 2.44 -61.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793347655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.080 kcal (2) G-P(sol) polarization free energy of solvation -63.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds