Wall clock time and date at job start Tue Mar 31 2020 11:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.66740 * 2 1 4 4 C 1.54889 * 110.75760 * 236.77128 * 2 1 3 5 5 C 1.54265 * 104.19411 * 203.55872 * 4 2 1 6 6 C 1.53878 * 106.60032 * 23.60522 * 5 4 2 7 7 H 1.08997 * 110.03180 * 240.66690 * 6 5 4 8 8 C 1.52998 * 110.03097 * 119.28544 * 6 5 4 9 9 N 1.46908 * 109.46973 * 67.09624 * 8 6 5 10 10 C 1.46898 * 110.99818 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.46954 * 179.97438 * 10 9 8 12 12 C 1.38285 * 119.92357 * 89.99629 * 11 10 9 13 13 C 1.38108 * 120.07295 * 179.97438 * 12 11 10 14 14 C 1.38906 * 119.92409 * 0.02562 * 13 12 11 15 15 N 1.39682 * 120.07555 * 179.97438 * 14 13 12 16 16 C 1.46494 * 120.00143 * 179.97438 * 15 14 13 17 17 C 1.46503 * 119.99664 * 359.97438 * 15 14 13 18 18 C 1.50697 * 109.47234 * 89.99937 * 17 15 14 19 19 H 1.07999 * 119.99965 * 359.97438 * 18 17 15 20 20 C 1.37880 * 119.99835 * 180.02562 * 18 17 15 21 21 N 1.31505 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46795 * 89.99652 * 22 20 18 24 24 H 1.48494 * 109.47111 * 209.99416 * 22 20 18 25 25 H 1.48498 * 109.47245 * 330.00120 * 22 20 18 26 26 C 1.38910 * 119.85487 * 359.97118 * 14 13 12 27 27 C 1.38110 * 119.92148 * 0.02725 * 26 14 13 28 28 C 1.54265 * 106.64134 * 359.97438 * 6 5 4 29 29 H 1.09000 * 109.46881 * 181.77941 * 1 2 3 30 30 H 1.08995 * 109.47269 * 301.77561 * 1 2 3 31 31 H 1.08996 * 109.47391 * 61.78085 * 1 2 3 32 32 H 1.08996 * 110.48732 * 84.87384 * 4 2 1 33 33 H 1.09000 * 110.48174 * 322.22890 * 4 2 1 34 34 H 1.09006 * 110.02864 * 264.32574 * 5 4 2 35 35 H 1.08995 * 110.07284 * 142.91291 * 5 4 2 36 36 H 1.08994 * 109.47395 * 307.09670 * 8 6 5 37 37 H 1.08999 * 109.46793 * 187.08845 * 8 6 5 38 38 H 1.00905 * 110.99278 * 303.95065 * 9 8 6 39 39 H 1.08991 * 109.47517 * 59.99582 * 10 9 8 40 40 H 1.09010 * 109.46895 * 299.99344 * 10 9 8 41 41 H 1.08006 * 119.96774 * 359.72622 * 12 11 10 42 42 H 1.08002 * 120.03508 * 179.97438 * 13 12 11 43 43 H 1.09003 * 109.47065 * 90.00118 * 16 15 14 44 44 H 1.09000 * 109.47537 * 210.00469 * 16 15 14 45 45 H 1.09006 * 109.47356 * 330.00303 * 16 15 14 46 46 H 1.09002 * 109.46606 * 210.00168 * 17 15 14 47 47 H 1.09006 * 109.46846 * 329.99505 * 17 15 14 48 48 H 0.97000 * 120.00194 * 180.02562 * 21 20 18 49 49 H 1.07994 * 120.04361 * 180.02562 * 26 14 13 50 50 H 1.07997 * 119.96347 * 179.97438 * 27 26 14 51 51 H 1.08995 * 110.48693 * 95.08632 * 28 6 5 52 52 H 1.09000 * 110.48937 * 217.74039 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7937 -1.2115 5 6 3.4950 -1.2213 -0.7734 6 6 3.4975 -1.2223 0.7654 7 1 4.2364 -0.5129 1.1380 8 6 3.8091 -2.6260 1.2880 9 7 5.1936 -2.9794 0.9468 10 6 5.5289 -4.3243 1.4335 11 6 6.9531 -4.6512 1.0651 12 6 7.9809 -4.3319 1.9334 13 6 9.2872 -4.6305 1.5992 14 6 9.5681 -5.2520 0.3891 15 7 10.8882 -5.5550 0.0477 16 6 11.1826 -6.2109 -1.2287 17 6 11.9784 -5.2169 0.9661 18 6 12.2216 -6.3713 1.9037 19 1 11.6237 -7.2671 1.8238 20 6 13.2069 -6.2835 2.8643 21 7 13.9346 -5.1925 2.9619 22 14 13.5079 -7.7142 4.0270 23 1 14.5143 -8.6309 3.4336 24 1 14.0120 -7.1993 5.3253 25 1 12.2367 -8.4499 4.2461 26 6 8.5333 -5.5715 -0.4808 27 6 7.2292 -5.2700 -0.1403 28 6 2.0835 -0.7947 1.2098 29 1 -0.3633 -1.0272 0.0319 30 1 -0.3633 0.5411 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 2.1289 -0.1562 -2.0942 33 1 1.4594 -1.6690 -1.4064 34 1 4.2321 -0.5106 -1.1475 35 1 3.7166 -2.2206 -1.1478 36 1 3.1278 -3.3435 0.8308 37 1 3.6854 -2.6463 2.3707 38 1 5.3512 -2.9052 -0.0471 39 1 4.8594 -5.0533 0.9770 40 1 5.4169 -4.3568 2.5173 41 1 7.7622 -3.8447 2.8723 42 1 10.0895 -4.3805 2.2777 43 1 11.3501 -5.4547 -1.9957 44 1 12.0763 -6.8260 -1.1236 45 1 10.3403 -6.8401 -1.5167 46 1 12.8848 -5.0151 0.3953 47 1 11.7071 -4.3320 1.5419 48 1 14.6280 -5.1308 3.6374 49 1 8.7482 -6.0550 -1.4222 50 1 6.4242 -5.5177 -0.8163 51 1 1.4644 -1.6700 1.4062 52 1 2.1373 -0.1582 2.0930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793347656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:48 Heat of formation + Delta-G solvation = 5.233936 kcal Electronic energy + Delta-G solvation = -25614.455156 eV Core-core repulsion = 22191.314153 eV Total energy + Delta-G solvation = -3423.141003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.26366 -38.86464 -36.45762 -34.99457 -32.74693 -31.88458 -30.41776 -29.95119 -29.03161 -27.78975 -26.45636 -25.11050 -24.00505 -23.25056 -21.99807 -21.50628 -20.28377 -19.72177 -19.46111 -16.85105 -16.54069 -16.40669 -15.69370 -15.20311 -14.99602 -14.51562 -14.41644 -14.15082 -13.91994 -13.67956 -13.65742 -13.48099 -13.06762 -12.90732 -12.82369 -12.77725 -12.19889 -12.15550 -11.84207 -11.71057 -11.42631 -11.28997 -11.24181 -11.21226 -10.97381 -10.90233 -10.81765 -10.77151 -10.68458 -10.61765 -10.46594 -10.24310 -9.87890 -9.74554 -8.83242 -8.50195 -8.34997 -8.23694 -6.45273 -6.00797 -4.16781 2.13711 2.24168 3.26338 3.33264 3.37868 4.10126 4.16660 4.28198 4.39646 4.41853 4.52295 4.74651 4.94357 4.99167 5.11193 5.21799 5.22147 5.29210 5.29844 5.35089 5.39395 5.43322 5.45127 5.53583 5.57619 5.61856 5.65559 5.66825 5.81392 5.82497 5.85002 5.87232 5.91032 6.03217 6.04781 6.10070 6.14108 6.24783 6.29001 6.41814 6.46214 6.66106 6.94181 7.01840 7.10933 7.20464 7.28957 7.39309 7.46640 7.62924 7.81685 8.16377 8.28138 8.50392 8.92275 9.49961 10.96248 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002066 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.809336 B =13550.271836 C =14040.563815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.091 4.091 7 H 0.081 0.919 8 C 0.065 3.935 9 N -0.685 5.685 10 C 0.115 3.885 11 C -0.172 4.172 12 C -0.051 4.051 13 C -0.188 4.188 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.222 4.222 27 C -0.069 4.069 28 C -0.114 4.114 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.340 0.660 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.065 0.935 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.205 7.415 -7.230 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.110 4.110 7 H 0.099 0.901 8 C -0.064 4.064 9 N -0.316 5.316 10 C -0.013 4.013 11 C -0.175 4.175 12 C -0.070 4.070 13 C -0.210 4.210 14 C 0.134 3.866 15 N -0.321 5.321 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.245 4.245 27 C -0.088 4.088 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.130 0.870 50 H 0.122 0.878 51 H 0.084 0.916 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.531 7.754 -6.628 24.733 hybrid contribution -0.078 -1.428 0.043 1.430 sum -22.609 6.327 -6.585 24.384 Atomic orbital electron populations 1.21758 0.95156 1.01718 1.01483 1.22116 0.95184 0.99255 0.95183 0.90736 1.22427 0.96269 0.99534 0.97531 1.22206 0.96937 1.01338 0.95404 1.21794 0.97014 0.97051 0.95112 0.90062 1.22047 0.88924 0.94948 1.00504 1.60586 1.22276 1.27776 1.21007 1.20646 0.92830 0.87939 0.99871 1.19176 0.94104 1.07426 0.96813 1.20643 0.91722 0.96548 0.98100 1.20901 0.97126 1.05565 0.97457 1.17960 0.84742 0.91243 0.92638 1.47095 1.04015 1.61783 1.19234 1.21467 1.01036 0.96396 0.85663 1.19289 0.83696 0.96310 0.87825 1.21582 1.17761 1.01838 1.15847 0.92268 1.24964 0.95699 0.96074 0.97360 1.69927 1.21812 1.26726 1.34876 0.86522 0.78504 0.82364 0.80240 1.20646 1.21080 1.19813 1.20510 0.92226 1.10518 1.01257 1.20496 0.95320 0.97614 0.95381 1.22471 0.95577 0.99586 0.97575 0.92719 0.92761 0.92807 0.91939 0.91838 0.91625 0.92103 0.95674 0.91253 0.84147 0.95569 0.91055 0.87031 0.85076 0.94642 0.91476 0.92735 0.95218 0.94568 0.92649 0.86982 0.87831 0.91593 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.28 37.16 0.35 -0.51 16 2 C -0.10 -0.68 3.48 -88.58 -0.31 -0.99 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.86 6.28 -25.07 -0.16 -1.02 16 5 C -0.12 -0.99 5.96 -25.61 -0.15 -1.14 16 6 C -0.09 -0.78 3.16 -89.50 -0.28 -1.07 16 7 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 8 C 0.07 0.63 4.80 -3.82 -0.02 0.61 16 9 N -0.68 -8.07 6.49 -115.06 -0.75 -8.82 16 10 C 0.12 1.48 5.81 -4.98 -0.03 1.45 16 11 C -0.17 -2.71 5.39 -104.59 -0.56 -3.27 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.19 -3.88 9.21 -39.38 -0.36 -4.24 16 14 C 0.24 4.95 6.55 -83.78 -0.55 4.40 16 15 N -0.62 -13.32 2.99 -181.00 -0.54 -13.86 16 16 C 0.10 1.75 10.19 59.84 0.61 2.36 16 17 C 0.25 6.29 4.91 -5.19 -0.03 6.26 16 18 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.74 13.28 55.43 0.74 -25.00 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 27 C -0.07 -1.08 9.69 -39.61 -0.38 -1.46 16 28 C -0.11 -0.84 5.82 -25.03 -0.15 -0.99 16 29 H 0.05 0.32 8.13 -51.93 -0.42 -0.10 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 6.93 -51.93 -0.36 0.16 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.34 3.94 7.43 -39.29 -0.29 3.64 16 39 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 40 H 0.07 0.91 8.09 -51.92 -0.42 0.49 16 41 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.13 2.98 6.14 -52.49 -0.32 2.66 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 45 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 46 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.04 0.97 6.20 -51.93 -0.32 0.65 16 48 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.11 1.78 6.14 -52.49 -0.32 1.45 16 50 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 51 H 0.07 0.48 7.75 -51.93 -0.40 0.08 16 52 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 406.84 15.07 6.13 6.13 Total: -1.00 -28.48 406.84 -12.11 -40.60 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -9.48 Total: 3.04 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -3.19 Total: -18.47 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.55 Total: -47.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.48 -12.11 -40.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793347656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.831 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds