Wall clock time and date at job start Tue Mar 31 2020 11:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.66740 * 2 1 4 4 C 1.54889 * 110.75760 * 236.77128 * 2 1 3 5 5 C 1.54265 * 104.19411 * 203.55872 * 4 2 1 6 6 C 1.53878 * 106.60032 * 23.60522 * 5 4 2 7 7 H 1.08997 * 110.03180 * 240.66690 * 6 5 4 8 8 C 1.52998 * 110.03097 * 119.28544 * 6 5 4 9 9 N 1.46908 * 109.46973 * 67.09624 * 8 6 5 10 10 C 1.46898 * 110.99818 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.46954 * 179.97438 * 10 9 8 12 12 C 1.38285 * 119.92357 * 89.99629 * 11 10 9 13 13 C 1.38108 * 120.07295 * 179.97438 * 12 11 10 14 14 C 1.38906 * 119.92409 * 0.02562 * 13 12 11 15 15 N 1.39682 * 120.07555 * 179.97438 * 14 13 12 16 16 C 1.46494 * 120.00143 * 179.97438 * 15 14 13 17 17 C 1.46503 * 119.99664 * 359.97438 * 15 14 13 18 18 C 1.50697 * 109.47234 * 89.99937 * 17 15 14 19 19 H 1.07999 * 119.99965 * 359.97438 * 18 17 15 20 20 C 1.37880 * 119.99835 * 180.02562 * 18 17 15 21 21 N 1.31505 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46795 * 89.99652 * 22 20 18 24 24 H 1.48494 * 109.47111 * 209.99416 * 22 20 18 25 25 H 1.48498 * 109.47245 * 330.00120 * 22 20 18 26 26 C 1.38910 * 119.85487 * 359.97118 * 14 13 12 27 27 C 1.38110 * 119.92148 * 0.02725 * 26 14 13 28 28 C 1.54265 * 106.64134 * 359.97438 * 6 5 4 29 29 H 1.09000 * 109.46881 * 181.77941 * 1 2 3 30 30 H 1.08995 * 109.47269 * 301.77561 * 1 2 3 31 31 H 1.08996 * 109.47391 * 61.78085 * 1 2 3 32 32 H 1.08996 * 110.48732 * 84.87384 * 4 2 1 33 33 H 1.09000 * 110.48174 * 322.22890 * 4 2 1 34 34 H 1.09006 * 110.02864 * 264.32574 * 5 4 2 35 35 H 1.08995 * 110.07284 * 142.91291 * 5 4 2 36 36 H 1.08994 * 109.47395 * 307.09670 * 8 6 5 37 37 H 1.08999 * 109.46793 * 187.08845 * 8 6 5 38 38 H 1.00905 * 110.99278 * 303.95065 * 9 8 6 39 39 H 1.08991 * 109.47517 * 59.99582 * 10 9 8 40 40 H 1.09010 * 109.46895 * 299.99344 * 10 9 8 41 41 H 1.08006 * 119.96774 * 359.72622 * 12 11 10 42 42 H 1.08002 * 120.03508 * 179.97438 * 13 12 11 43 43 H 1.09003 * 109.47065 * 90.00118 * 16 15 14 44 44 H 1.09000 * 109.47537 * 210.00469 * 16 15 14 45 45 H 1.09006 * 109.47356 * 330.00303 * 16 15 14 46 46 H 1.09002 * 109.46606 * 210.00168 * 17 15 14 47 47 H 1.09006 * 109.46846 * 329.99505 * 17 15 14 48 48 H 0.97000 * 120.00194 * 180.02562 * 21 20 18 49 49 H 1.07994 * 120.04361 * 180.02562 * 26 14 13 50 50 H 1.07997 * 119.96347 * 179.97438 * 27 26 14 51 51 H 1.08995 * 110.48693 * 95.08632 * 28 6 5 52 52 H 1.09000 * 110.48937 * 217.74039 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7937 -1.2115 5 6 3.4950 -1.2213 -0.7734 6 6 3.4975 -1.2223 0.7654 7 1 4.2364 -0.5129 1.1380 8 6 3.8091 -2.6260 1.2880 9 7 5.1936 -2.9794 0.9468 10 6 5.5289 -4.3243 1.4335 11 6 6.9531 -4.6512 1.0651 12 6 7.9809 -4.3319 1.9334 13 6 9.2872 -4.6305 1.5992 14 6 9.5681 -5.2520 0.3891 15 7 10.8882 -5.5550 0.0477 16 6 11.1826 -6.2109 -1.2287 17 6 11.9784 -5.2169 0.9661 18 6 12.2216 -6.3713 1.9037 19 1 11.6237 -7.2671 1.8238 20 6 13.2069 -6.2835 2.8643 21 7 13.9346 -5.1925 2.9619 22 14 13.5079 -7.7142 4.0270 23 1 14.5143 -8.6309 3.4336 24 1 14.0120 -7.1993 5.3253 25 1 12.2367 -8.4499 4.2461 26 6 8.5333 -5.5715 -0.4808 27 6 7.2292 -5.2700 -0.1403 28 6 2.0835 -0.7947 1.2098 29 1 -0.3633 -1.0272 0.0319 30 1 -0.3633 0.5411 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 2.1289 -0.1562 -2.0942 33 1 1.4594 -1.6690 -1.4064 34 1 4.2321 -0.5106 -1.1475 35 1 3.7166 -2.2206 -1.1478 36 1 3.1278 -3.3435 0.8308 37 1 3.6854 -2.6463 2.3707 38 1 5.3512 -2.9052 -0.0471 39 1 4.8594 -5.0533 0.9770 40 1 5.4169 -4.3568 2.5173 41 1 7.7622 -3.8447 2.8723 42 1 10.0895 -4.3805 2.2777 43 1 11.3501 -5.4547 -1.9957 44 1 12.0763 -6.8260 -1.1236 45 1 10.3403 -6.8401 -1.5167 46 1 12.8848 -5.0151 0.3953 47 1 11.7071 -4.3320 1.5419 48 1 14.6280 -5.1308 3.6374 49 1 8.7482 -6.0550 -1.4222 50 1 6.4242 -5.5177 -0.8163 51 1 1.4644 -1.6700 1.4062 52 1 2.1373 -0.1582 2.0930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793347656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:47 Heat of formation + Delta-G solvation = -8.089474 kcal Electronic energy + Delta-G solvation = -25615.032902 eV Core-core repulsion = 22191.314153 eV Total energy + Delta-G solvation = -3423.718749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48364 -39.73064 -37.75691 -36.17554 -34.73943 -32.75531 -31.88336 -30.93795 -29.90227 -29.57250 -27.51823 -26.35555 -25.28621 -24.19543 -23.39933 -22.99330 -21.07494 -20.80250 -20.28465 -18.63915 -18.15530 -17.40495 -16.89749 -16.56435 -16.08366 -15.80874 -15.68642 -15.38907 -15.13506 -14.76088 -14.64674 -14.44597 -14.30047 -14.10456 -13.92219 -13.76189 -13.55347 -13.19112 -13.16595 -13.03020 -12.87214 -12.67818 -12.61563 -12.53266 -12.30926 -12.08464 -11.78585 -11.74176 -11.72329 -11.46640 -11.38959 -11.35789 -11.29701 -11.25360 -10.64572 -10.40705 -9.66465 -9.24808 -8.36232 -7.79930 -6.37749 0.71522 0.84255 1.36264 1.37573 1.48686 2.34034 2.63783 3.02263 3.05960 3.47941 3.68364 3.79260 3.96396 4.06970 4.12259 4.23061 4.31656 4.39592 4.44297 4.46838 4.54387 4.62495 4.66181 4.72402 4.75026 4.76070 4.77985 4.81167 4.87015 4.89263 4.90167 4.91934 5.01105 5.02793 5.12797 5.15335 5.20521 5.21078 5.27939 5.33260 5.38074 5.41984 5.54618 5.59418 5.61895 5.66685 5.70042 5.93943 6.07009 6.16160 6.24850 6.50251 6.55631 6.82647 6.94123 7.34048 8.83123 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002066 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.809336 B =13550.271836 C =14040.563815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.088 4.088 7 H 0.065 0.935 8 C 0.069 3.931 9 N -0.695 5.695 10 C 0.120 3.880 11 C -0.159 4.159 12 C -0.057 4.057 13 C -0.217 4.217 14 C 0.212 3.788 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.266 3.734 18 C -0.542 4.542 19 H 0.049 0.951 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.272 1.272 26 C -0.216 4.216 27 C -0.062 4.062 28 C -0.111 4.111 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.342 0.658 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.009 0.991 47 H 0.010 0.990 48 H 0.267 0.733 49 H 0.134 0.866 50 H 0.142 0.858 51 H 0.070 0.930 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.050 6.443 -8.119 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.158 4.158 6 C -0.107 4.107 7 H 0.084 0.916 8 C -0.059 4.059 9 N -0.327 5.327 10 C -0.008 4.008 11 C -0.162 4.162 12 C -0.076 4.076 13 C -0.240 4.240 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.144 3.856 18 C -0.580 4.580 19 H 0.068 0.932 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.197 1.197 26 C -0.239 4.239 27 C -0.081 4.081 28 C -0.149 4.149 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.152 0.848 50 H 0.160 0.840 51 H 0.088 0.912 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.413 6.785 -7.537 27.362 hybrid contribution 0.679 -1.050 0.299 1.286 sum -24.733 5.736 -7.238 26.401 Atomic orbital electron populations 1.21738 0.94318 1.01952 1.01898 1.22117 0.95872 0.98963 0.94753 0.91015 1.22416 0.95581 0.99762 0.97756 1.22190 0.97507 1.01176 0.94953 1.21744 0.97378 0.96123 0.95471 0.91598 1.22044 0.87822 0.95583 1.00483 1.60526 1.23860 1.27102 1.21247 1.20592 0.90967 0.89009 1.00216 1.19527 0.95127 1.05415 0.96106 1.20785 0.91135 0.96628 0.99052 1.20783 0.97497 1.07892 0.97812 1.18235 0.84947 0.92663 0.93466 1.46956 1.03663 1.63361 1.19979 1.21603 1.01613 0.96891 0.84383 1.18774 0.84215 0.94816 0.87777 1.21778 1.17689 1.01963 1.16615 0.93229 1.25801 0.95413 0.98669 0.98913 1.70036 1.22346 1.28543 1.35666 0.85483 0.78424 0.79159 0.78183 1.19516 1.20422 1.19697 1.20782 0.92093 1.09704 1.01299 1.20914 0.95507 0.96027 0.95606 1.22449 0.94765 0.99839 0.97847 0.92550 0.92444 0.92359 0.91553 0.91486 0.92236 0.92119 0.94733 0.91448 0.83894 0.93663 0.90970 0.86285 0.88810 0.92966 0.92520 0.90265 0.97280 0.97219 0.92393 0.84843 0.83996 0.91155 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.28 71.98 0.67 -0.73 16 2 C -0.10 -1.18 3.48 -9.47 -0.03 -1.21 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -1.45 6.28 31.67 0.20 -1.25 16 5 C -0.12 -1.76 5.96 31.32 0.19 -1.58 16 6 C -0.09 -1.39 3.16 -10.07 -0.03 -1.42 16 7 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 8 C 0.07 1.19 4.80 86.30 0.41 1.60 16 9 N -0.70 -14.78 6.49 -517.93 -3.36 -18.15 16 10 C 0.12 2.74 5.81 85.56 0.50 3.23 16 11 C -0.16 -4.66 5.39 -19.84 -0.11 -4.77 16 12 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 13 C -0.22 -9.37 9.21 22.40 0.21 -9.16 16 14 C 0.21 8.81 6.55 38.21 0.25 9.06 16 15 N -0.63 -28.14 2.99 -726.55 -2.17 -30.31 16 16 C 0.10 3.44 10.19 127.77 1.30 4.74 16 17 C 0.27 14.25 4.91 85.63 0.42 14.67 16 18 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 20 C 0.01 0.64 5.46 84.66 0.46 1.10 16 21 N -0.93 -55.04 13.28 21.45 0.28 -54.75 16 22 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 C -0.22 -7.15 9.21 22.40 0.21 -6.94 16 27 C -0.06 -1.73 9.69 22.25 0.22 -1.51 16 28 C -0.11 -1.44 5.82 31.69 0.18 -1.26 16 29 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.79 8.05 -2.39 -0.02 0.77 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.92 16 35 H 0.06 0.89 6.93 -2.39 -0.02 0.87 16 36 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.34 7.03 7.43 -89.69 -0.67 6.36 16 39 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 40 H 0.07 1.66 8.09 -2.38 -0.02 1.64 16 41 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.09 4.67 6.14 -2.91 -0.02 4.65 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 45 H 0.08 2.34 6.20 -2.38 -0.01 2.32 16 46 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 47 H 0.01 0.57 6.20 -2.38 -0.01 0.56 16 48 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 49 H 0.13 3.79 6.14 -2.91 -0.02 3.77 16 50 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 51 H 0.07 0.86 7.75 -2.39 -0.02 0.85 16 52 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -63.37 406.84 2.48 -60.89 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.20 Total: 23.60 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 5.50 Total: -27.89 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -5.25 Total: -103.21 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.37 2.48 -60.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793347656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.801 kcal (2) G-P(sol) polarization free energy of solvation -63.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds