Wall clock time and date at job start Tue Mar 31 2020 11:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.54016 * 2 1 4 4 C 1.54891 * 110.48809 * 122.61408 * 2 1 3 5 5 C 1.54888 * 102.75120 * 156.61818 * 4 2 1 6 6 C 1.54261 * 104.19672 * 322.06034 * 5 4 2 7 7 C 1.53876 * 106.59990 * 23.60631 * 6 5 4 8 8 H 1.08998 * 110.03319 * 240.71542 * 7 6 5 9 9 C 1.52999 * 110.03160 * 119.28578 * 7 6 5 10 10 N 1.46894 * 109.47392 * 66.45501 * 9 7 6 11 11 C 1.46896 * 111.00338 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47514 * 180.02562 * 11 10 9 13 13 C 1.38287 * 119.92558 * 269.73104 * 12 11 10 14 14 C 1.38103 * 120.07585 * 179.72296 * 13 12 11 15 15 C 1.38913 * 119.92466 * 0.54094 * 14 13 12 16 16 N 1.39673 * 120.07643 * 179.70470 * 15 14 13 17 17 C 1.46502 * 119.99879 * 180.02562 * 16 15 14 18 18 C 1.46493 * 119.99878 * 0.02731 * 16 15 14 19 19 C 1.50694 * 109.47419 * 89.99913 * 18 16 15 20 20 H 1.08006 * 120.00183 * 0.02562 * 19 18 16 21 21 C 1.37882 * 120.00458 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99575 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00234 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47194 * 89.99676 * 23 21 19 25 25 H 1.48496 * 109.47065 * 209.99730 * 23 21 19 26 26 H 1.48500 * 109.46986 * 329.99916 * 23 21 19 27 27 C 1.38912 * 119.84985 * 359.73260 * 15 14 13 28 28 C 1.38111 * 119.92409 * 359.97438 * 27 15 14 29 29 H 1.09000 * 109.47171 * 182.61458 * 1 2 3 30 30 H 1.09000 * 109.46838 * 302.61533 * 1 2 3 31 31 H 1.08996 * 109.46840 * 62.60915 * 1 2 3 32 32 H 1.09005 * 110.75269 * 38.30322 * 4 2 1 33 33 H 1.09004 * 110.91555 * 275.01137 * 4 2 1 34 34 H 1.09000 * 110.48622 * 203.37816 * 5 4 2 35 35 H 1.09001 * 110.59737 * 80.79460 * 5 4 2 36 36 H 1.08998 * 110.03492 * 264.32506 * 6 5 4 37 37 H 1.08999 * 110.07717 * 142.91216 * 6 5 4 38 38 H 1.09000 * 109.47244 * 186.45674 * 9 7 6 39 39 H 1.09001 * 109.47161 * 306.45098 * 9 7 6 40 40 H 1.00898 * 110.99905 * 303.95680 * 10 9 7 41 41 H 1.09001 * 109.47168 * 300.00057 * 11 10 9 42 42 H 1.08997 * 109.47153 * 60.00398 * 11 10 9 43 43 H 1.08000 * 119.96044 * 359.97438 * 13 12 11 44 44 H 1.08003 * 120.04064 * 180.27696 * 14 13 12 45 45 H 1.08999 * 109.47065 * 90.00288 * 17 16 15 46 46 H 1.09004 * 109.46834 * 210.00150 * 17 16 15 47 47 H 1.09001 * 109.47421 * 329.99773 * 17 16 15 48 48 H 1.09008 * 109.46944 * 209.99990 * 18 16 15 49 49 H 1.09001 * 109.47307 * 329.99778 * 18 16 15 50 50 H 0.97000 * 119.99992 * 179.97438 * 22 21 19 51 51 H 1.08000 * 120.04039 * 179.97438 * 27 15 14 52 52 H 1.07999 * 119.96214 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0722 -0.7820 1.2222 5 6 3.4907 -1.1980 0.7600 6 6 3.3166 -1.5405 -0.7340 7 6 2.0700 -0.7789 -1.2173 8 1 1.3177 -1.4822 -1.5741 9 6 2.4507 0.1940 -2.3350 10 7 2.8810 -0.5633 -3.5179 11 6 3.2546 0.3402 -4.6142 12 6 3.6889 -0.4709 -5.8078 13 6 5.0185 -0.8201 -5.9578 14 6 5.4190 -1.5682 -7.0474 15 6 4.4863 -1.9603 -7.9992 16 7 4.8888 -2.7117 -9.1057 17 6 3.9039 -3.1239 -10.1088 18 6 6.2960 -3.0877 -9.2631 19 6 6.5398 -4.4140 -8.5906 20 1 5.7277 -4.9261 -8.0959 21 6 7.7997 -4.9740 -8.6070 22 7 8.7885 -4.3508 -9.2099 23 14 8.1018 -6.6185 -7.7741 24 1 7.8721 -7.7161 -8.7476 25 1 9.5027 -6.6757 -7.2850 26 1 7.1706 -6.7711 -6.6274 27 6 3.1524 -1.6030 -7.8485 28 6 2.7578 -0.8599 -6.7532 29 1 -0.3633 -1.0266 0.0469 30 1 -0.3633 0.5539 0.8656 31 1 -0.3633 0.4728 -0.9124 32 1 1.4580 -1.6601 1.4222 33 1 2.1251 -0.1409 2.1021 34 1 3.8316 -2.0723 1.3146 35 1 4.1916 -0.3723 0.8829 36 1 3.1692 -2.6135 -0.8564 37 1 4.1927 -1.2177 -1.2965 38 1 1.5879 0.8087 -2.5913 39 1 3.2656 0.8345 -1.9974 40 1 3.6390 -1.1892 -3.2904 41 1 2.3970 0.9556 -4.8862 42 1 4.0750 0.9819 -4.2927 43 1 5.7439 -0.5109 -5.2198 44 1 6.4568 -1.8444 -7.1616 45 1 3.8323 -2.3600 -10.8830 46 1 4.2150 -4.0676 -10.5571 47 1 2.9316 -3.2510 -9.6326 48 1 6.5339 -3.1688 -10.3237 49 1 6.9286 -2.3268 -8.8059 50 1 9.6749 -4.7445 -9.2211 51 1 2.4248 -1.9059 -8.5869 52 1 1.7208 -0.5821 -6.6352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798503178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:14 Heat of formation + Delta-G solvation = 5.477374 kcal Electronic energy + Delta-G solvation = -25903.218895 eV Core-core repulsion = 22480.088448 eV Total energy + Delta-G solvation = -3423.130447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.30162 -38.87653 -36.39375 -34.84324 -32.70944 -31.51355 -30.87409 -30.41600 -28.65905 -27.78071 -26.05910 -25.33733 -24.02397 -22.96210 -22.12472 -21.44546 -20.49228 -19.69916 -19.45581 -16.83021 -16.52329 -16.20336 -15.40441 -15.26309 -14.95813 -14.69740 -14.48274 -14.16723 -13.94743 -13.68711 -13.62470 -13.29370 -13.14253 -12.87215 -12.79748 -12.63864 -12.22628 -12.13142 -11.82824 -11.72266 -11.39237 -11.27295 -11.24187 -11.10415 -10.96010 -10.87555 -10.81888 -10.73736 -10.68072 -10.57832 -10.42964 -10.25923 -9.87913 -9.73913 -8.83483 -8.50862 -8.33482 -8.23155 -6.45483 -6.01349 -4.17437 2.13375 2.24839 3.26012 3.32849 3.37801 4.10987 4.18017 4.35145 4.41232 4.42230 4.55242 4.78043 5.04321 5.06570 5.11661 5.21378 5.24743 5.31021 5.33721 5.38018 5.39182 5.40836 5.53108 5.61762 5.63516 5.67016 5.67366 5.77309 5.80685 5.84443 5.87228 5.93349 5.97586 6.02860 6.04491 6.09463 6.17175 6.29968 6.31157 6.41567 6.45328 6.66929 6.94245 7.03100 7.13299 7.22675 7.27138 7.34869 7.49407 7.62621 7.81150 8.15793 8.27842 8.50173 8.91857 9.49377 10.95473 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002611 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.138526 B =10722.994865 C =12136.397426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.086 4.086 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.686 5.686 11 C 0.116 3.884 12 C -0.173 4.173 13 C -0.068 4.068 14 C -0.187 4.187 15 C 0.241 3.759 16 N -0.616 5.616 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.222 4.222 28 C -0.051 4.051 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.342 0.658 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.113 0.887 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 9.904 15.329 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.105 4.105 8 H 0.100 0.900 9 C -0.064 4.064 10 N -0.318 5.318 11 C -0.012 4.012 12 C -0.176 4.176 13 C -0.087 4.087 14 C -0.210 4.210 15 C 0.134 3.866 16 N -0.322 5.322 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.246 4.246 28 C -0.071 4.071 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.161 0.839 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.125 0.875 44 H 0.149 0.851 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.131 0.869 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.044 9.662 14.835 22.597 hybrid contribution 1.208 -0.735 0.653 1.558 sum -12.836 8.927 15.488 22.007 Atomic orbital electron populations 1.21800 0.94991 1.01809 1.01486 1.21995 0.95465 0.99182 0.94443 0.90925 1.22558 0.96254 0.99721 0.97216 1.22348 0.96964 1.00901 0.96082 1.22216 0.97724 1.00512 0.95553 1.21871 0.97604 0.97101 0.93930 0.89998 1.22035 0.99222 0.95048 0.90059 1.60570 1.43728 1.20606 1.06897 1.20633 0.98318 0.92934 0.89357 1.19179 0.93600 1.06907 0.97901 1.20651 0.94738 0.96691 0.96646 1.20839 1.00235 1.04062 0.95845 1.17958 0.92414 0.88971 0.87249 1.47093 1.09764 1.54266 1.21030 1.21472 0.92303 0.99480 0.91324 1.19279 0.75120 0.95450 0.97246 1.21584 0.95076 1.05034 1.35220 0.92255 1.24968 0.95908 0.97826 0.95409 1.69933 1.01345 1.38840 1.43336 0.86524 0.77494 0.83780 0.79865 1.20625 1.21100 1.19754 1.20573 0.94420 1.07871 1.01688 1.20485 0.97822 0.95880 0.92868 0.92603 0.92960 0.92575 0.91483 0.91897 0.91857 0.91905 0.91567 0.92016 0.91373 0.95666 0.83876 0.91260 0.95462 0.87538 0.85144 0.94636 0.91480 0.92654 0.95227 0.94652 0.92663 0.86919 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.12 37.16 0.34 -0.68 16 2 C -0.09 -0.71 2.99 -88.96 -0.27 -0.98 16 3 H 0.07 0.56 7.85 -51.93 -0.41 0.16 16 4 C -0.12 -0.89 6.33 -24.74 -0.16 -1.04 16 5 C -0.13 -1.01 6.83 -25.08 -0.17 -1.18 16 6 C -0.12 -1.13 5.95 -25.61 -0.15 -1.28 16 7 C -0.09 -0.79 2.73 -89.50 -0.24 -1.03 16 8 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 9 C 0.07 0.66 4.81 -3.83 -0.02 0.64 16 10 N -0.69 -8.37 6.49 -115.07 -0.75 -9.12 16 11 C 0.12 1.48 5.81 -4.98 -0.03 1.46 16 12 C -0.17 -2.72 5.40 -104.59 -0.56 -3.28 16 13 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 14 C -0.19 -3.82 9.21 -39.38 -0.36 -4.18 16 15 C 0.24 4.95 6.55 -83.79 -0.55 4.40 16 16 N -0.62 -13.33 2.99 -181.00 -0.54 -13.87 16 17 C 0.10 1.75 10.19 59.85 0.61 2.36 16 18 C 0.25 6.28 4.91 -5.20 -0.03 6.25 16 19 C -0.53 -14.53 9.39 -34.44 -0.32 -14.85 16 20 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 23 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 C -0.22 -3.95 9.21 -39.38 -0.36 -4.31 16 28 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 29 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.34 4.33 7.39 -39.29 -0.29 4.04 16 41 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.13 2.93 6.14 -52.48 -0.32 2.61 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.88 6.20 -51.93 -0.32 0.55 16 48 H 0.03 0.78 8.07 -51.92 -0.42 0.36 16 49 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 50 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 51 H 0.11 1.81 6.14 -52.49 -0.32 1.49 16 52 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -28.41 406.52 -12.05 -40.46 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -9.46 Total: 3.93 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.14 Total: -18.89 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.55 Total: -47.96 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.41 -12.05 -40.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.935 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds