Wall clock time and date at job start Tue Mar 31 2020 11:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.54016 * 2 1 4 4 C 1.54891 * 110.48809 * 122.61408 * 2 1 3 5 5 C 1.54888 * 102.75120 * 156.61818 * 4 2 1 6 6 C 1.54261 * 104.19672 * 322.06034 * 5 4 2 7 7 C 1.53876 * 106.59990 * 23.60631 * 6 5 4 8 8 H 1.08998 * 110.03319 * 240.71542 * 7 6 5 9 9 C 1.52999 * 110.03160 * 119.28578 * 7 6 5 10 10 N 1.46894 * 109.47392 * 66.45501 * 9 7 6 11 11 C 1.46896 * 111.00338 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47514 * 180.02562 * 11 10 9 13 13 C 1.38287 * 119.92558 * 269.73104 * 12 11 10 14 14 C 1.38103 * 120.07585 * 179.72296 * 13 12 11 15 15 C 1.38913 * 119.92466 * 0.54094 * 14 13 12 16 16 N 1.39673 * 120.07643 * 179.70470 * 15 14 13 17 17 C 1.46502 * 119.99879 * 180.02562 * 16 15 14 18 18 C 1.46493 * 119.99878 * 0.02731 * 16 15 14 19 19 C 1.50694 * 109.47419 * 89.99913 * 18 16 15 20 20 H 1.08006 * 120.00183 * 0.02562 * 19 18 16 21 21 C 1.37882 * 120.00458 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99575 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00234 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47194 * 89.99676 * 23 21 19 25 25 H 1.48496 * 109.47065 * 209.99730 * 23 21 19 26 26 H 1.48500 * 109.46986 * 329.99916 * 23 21 19 27 27 C 1.38912 * 119.84985 * 359.73260 * 15 14 13 28 28 C 1.38111 * 119.92409 * 359.97438 * 27 15 14 29 29 H 1.09000 * 109.47171 * 182.61458 * 1 2 3 30 30 H 1.09000 * 109.46838 * 302.61533 * 1 2 3 31 31 H 1.08996 * 109.46840 * 62.60915 * 1 2 3 32 32 H 1.09005 * 110.75269 * 38.30322 * 4 2 1 33 33 H 1.09004 * 110.91555 * 275.01137 * 4 2 1 34 34 H 1.09000 * 110.48622 * 203.37816 * 5 4 2 35 35 H 1.09001 * 110.59737 * 80.79460 * 5 4 2 36 36 H 1.08998 * 110.03492 * 264.32506 * 6 5 4 37 37 H 1.08999 * 110.07717 * 142.91216 * 6 5 4 38 38 H 1.09000 * 109.47244 * 186.45674 * 9 7 6 39 39 H 1.09001 * 109.47161 * 306.45098 * 9 7 6 40 40 H 1.00898 * 110.99905 * 303.95680 * 10 9 7 41 41 H 1.09001 * 109.47168 * 300.00057 * 11 10 9 42 42 H 1.08997 * 109.47153 * 60.00398 * 11 10 9 43 43 H 1.08000 * 119.96044 * 359.97438 * 13 12 11 44 44 H 1.08003 * 120.04064 * 180.27696 * 14 13 12 45 45 H 1.08999 * 109.47065 * 90.00288 * 17 16 15 46 46 H 1.09004 * 109.46834 * 210.00150 * 17 16 15 47 47 H 1.09001 * 109.47421 * 329.99773 * 17 16 15 48 48 H 1.09008 * 109.46944 * 209.99990 * 18 16 15 49 49 H 1.09001 * 109.47307 * 329.99778 * 18 16 15 50 50 H 0.97000 * 119.99992 * 179.97438 * 22 21 19 51 51 H 1.08000 * 120.04039 * 179.97438 * 27 15 14 52 52 H 1.07999 * 119.96214 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0722 -0.7820 1.2222 5 6 3.4907 -1.1980 0.7600 6 6 3.3166 -1.5405 -0.7340 7 6 2.0700 -0.7789 -1.2173 8 1 1.3177 -1.4822 -1.5741 9 6 2.4507 0.1940 -2.3350 10 7 2.8810 -0.5633 -3.5179 11 6 3.2546 0.3402 -4.6142 12 6 3.6889 -0.4709 -5.8078 13 6 5.0185 -0.8201 -5.9578 14 6 5.4190 -1.5682 -7.0474 15 6 4.4863 -1.9603 -7.9992 16 7 4.8888 -2.7117 -9.1057 17 6 3.9039 -3.1239 -10.1088 18 6 6.2960 -3.0877 -9.2631 19 6 6.5398 -4.4140 -8.5906 20 1 5.7277 -4.9261 -8.0959 21 6 7.7997 -4.9740 -8.6070 22 7 8.7885 -4.3508 -9.2099 23 14 8.1018 -6.6185 -7.7741 24 1 7.8721 -7.7161 -8.7476 25 1 9.5027 -6.6757 -7.2850 26 1 7.1706 -6.7711 -6.6274 27 6 3.1524 -1.6030 -7.8485 28 6 2.7578 -0.8599 -6.7532 29 1 -0.3633 -1.0266 0.0469 30 1 -0.3633 0.5539 0.8656 31 1 -0.3633 0.4728 -0.9124 32 1 1.4580 -1.6601 1.4222 33 1 2.1251 -0.1409 2.1021 34 1 3.8316 -2.0723 1.3146 35 1 4.1916 -0.3723 0.8829 36 1 3.1692 -2.6135 -0.8564 37 1 4.1927 -1.2177 -1.2965 38 1 1.5879 0.8087 -2.5913 39 1 3.2656 0.8345 -1.9974 40 1 3.6390 -1.1892 -3.2904 41 1 2.3970 0.9556 -4.8862 42 1 4.0750 0.9819 -4.2927 43 1 5.7439 -0.5109 -5.2198 44 1 6.4568 -1.8444 -7.1616 45 1 3.8323 -2.3600 -10.8830 46 1 4.2150 -4.0676 -10.5571 47 1 2.9316 -3.2510 -9.6326 48 1 6.5339 -3.1688 -10.3237 49 1 6.9286 -2.3268 -8.8059 50 1 9.6749 -4.7445 -9.2211 51 1 2.4248 -1.9059 -8.5869 52 1 1.7208 -0.5821 -6.6352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798503178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:13 Heat of formation + Delta-G solvation = -7.702504 kcal Electronic energy + Delta-G solvation = -25903.790417 eV Core-core repulsion = 22480.088448 eV Total energy + Delta-G solvation = -3423.701969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.49119 -39.82605 -37.73640 -36.05181 -34.71874 -32.12684 -31.99959 -31.88393 -29.87132 -29.46554 -27.18850 -26.36727 -25.49223 -23.95523 -23.46857 -22.93184 -21.16994 -21.00787 -20.27900 -18.64021 -18.17900 -17.33187 -16.80976 -16.34854 -16.01305 -15.93515 -15.60462 -15.45801 -15.26599 -14.92608 -14.58277 -14.50784 -14.29884 -14.11355 -13.90491 -13.70556 -13.53713 -13.21918 -13.14800 -13.03504 -12.93605 -12.68847 -12.58597 -12.53842 -12.21525 -12.05156 -11.92180 -11.76362 -11.60978 -11.51216 -11.41726 -11.38159 -11.28392 -11.24817 -10.64805 -10.40962 -9.66622 -9.26952 -8.36691 -7.80207 -6.37991 0.71044 0.84446 1.36152 1.37197 1.48529 2.33827 2.63507 3.01806 3.05529 3.46912 3.70463 3.75859 3.94687 4.05809 4.12986 4.25680 4.35852 4.40958 4.42648 4.44939 4.52870 4.64172 4.66092 4.67694 4.71198 4.71736 4.74746 4.79207 4.84691 4.87765 4.93122 4.98296 5.01686 5.05900 5.13043 5.13675 5.20166 5.21707 5.27375 5.33498 5.37596 5.40078 5.50035 5.58960 5.63903 5.67836 5.69947 5.92875 6.06806 6.15950 6.24856 6.48808 6.50070 6.82446 6.93707 7.33849 8.82650 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002611 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.138526 B =10722.994865 C =12136.397426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.082 4.082 8 H 0.070 0.930 9 C 0.070 3.930 10 N -0.694 5.694 11 C 0.120 3.880 12 C -0.159 4.159 13 C -0.069 4.069 14 C -0.215 4.215 15 C 0.212 3.788 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.266 3.734 19 C -0.540 4.540 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.272 1.272 27 C -0.217 4.217 28 C -0.049 4.049 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.338 0.662 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.132 0.868 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.880 10.512 17.163 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.162 4.162 6 C -0.162 4.162 7 C -0.101 4.101 8 H 0.088 0.912 9 C -0.059 4.059 10 N -0.325 5.325 11 C -0.008 4.008 12 C -0.162 4.162 13 C -0.088 4.088 14 C -0.238 4.238 15 C 0.107 3.893 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.579 4.579 20 H 0.066 0.934 21 C -0.187 4.187 22 N -0.566 5.566 23 Si 0.786 3.214 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.197 1.197 27 C -0.240 4.240 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.156 0.844 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.150 0.850 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.272 10.291 16.681 25.474 hybrid contribution 1.830 -0.829 0.156 2.015 sum -14.441 9.462 16.838 24.116 Atomic orbital electron populations 1.21783 0.94418 1.01804 1.01903 1.21975 0.95902 0.99100 0.93760 0.90569 1.22555 0.95610 0.99881 0.97452 1.22351 0.97592 1.01119 0.95186 1.22217 0.97541 0.99998 0.96450 1.21820 0.97153 0.96847 0.94285 0.91164 1.22049 0.99433 0.95039 0.89383 1.60567 1.43471 1.20807 1.07683 1.20618 0.99236 0.92595 0.88349 1.19533 0.92642 1.05442 0.98597 1.20822 0.96160 0.95973 0.95848 1.20749 0.98843 1.06369 0.97864 1.18233 0.93771 0.90070 0.87237 1.46964 1.08744 1.55655 1.22653 1.21603 0.92273 0.99481 0.91150 1.18769 0.77532 0.93999 0.95219 1.21765 0.95003 1.05866 1.35269 0.93371 1.25785 0.95622 1.01358 0.95941 1.70038 1.01770 1.40440 1.44393 0.85504 0.77465 0.79564 0.78857 1.19567 1.20359 1.19690 1.20813 0.93280 1.07357 1.02568 1.20874 0.99364 0.94674 0.91897 0.92893 0.91979 0.92678 0.91492 0.90810 0.91653 0.91661 0.92448 0.92755 0.90724 0.95298 0.84389 0.89671 0.94688 0.86059 0.88682 0.92894 0.92520 0.90378 0.97274 0.97127 0.92382 0.84990 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.12 71.98 0.66 -1.05 16 2 C -0.09 -1.18 2.99 -9.72 -0.03 -1.21 16 3 H 0.08 0.98 7.85 -2.38 -0.02 0.96 16 4 C -0.12 -1.49 6.33 31.89 0.20 -1.29 16 5 C -0.12 -1.82 6.83 31.67 0.22 -1.60 16 6 C -0.12 -2.16 5.95 31.32 0.19 -1.97 16 7 C -0.08 -1.36 2.73 -10.07 -0.03 -1.39 16 8 H 0.07 1.34 7.84 -2.39 -0.02 1.32 16 9 C 0.07 1.23 4.81 86.30 0.42 1.64 16 10 N -0.69 -15.34 6.49 -517.96 -3.36 -18.70 16 11 C 0.12 2.73 5.81 85.56 0.50 3.23 16 12 C -0.16 -4.68 5.40 -19.84 -0.11 -4.79 16 13 C -0.07 -2.36 9.69 22.25 0.22 -2.15 16 14 C -0.22 -9.15 9.21 22.40 0.21 -8.94 16 15 C 0.21 8.82 6.55 38.22 0.25 9.07 16 16 N -0.63 -28.21 2.99 -726.57 -2.17 -30.38 16 17 C 0.10 3.47 10.19 127.77 1.30 4.77 16 18 C 0.27 14.21 4.91 85.63 0.42 14.63 16 19 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 20 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.01 0.69 5.46 84.66 0.46 1.15 16 22 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 23 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 27 C -0.22 -7.37 9.21 22.40 0.21 -7.16 16 28 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 29 H 0.05 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.86 8.04 -2.38 -0.02 0.84 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.01 6.89 -2.39 -0.02 1.00 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.34 8.04 7.39 -89.70 -0.66 7.38 16 41 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 42 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 43 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.10 4.64 6.14 -2.91 -0.02 4.63 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 2.08 8.07 -2.38 -0.02 2.06 16 47 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 48 H 0.01 0.52 8.07 -2.38 -0.02 0.50 16 49 H 0.01 0.62 6.20 -2.39 -0.01 0.60 16 50 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 51 H 0.13 3.89 6.14 -2.91 -0.02 3.87 16 52 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -62.65 406.52 2.51 -60.14 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.21 Total: 25.74 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 5.53 Total: -28.79 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -5.25 Total: -103.60 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.65 2.51 -60.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.434 kcal (2) G-P(sol) polarization free energy of solvation -62.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds