Wall clock time and date at job start Tue Mar 31 2020 11:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.05432 * 2 1 4 4 C 1.54369 * 110.04502 * 238.52540 * 2 1 3 5 5 C 1.54892 * 104.19467 * 217.09146 * 4 2 1 6 6 C 1.54880 * 102.75037 * 37.97256 * 5 4 2 7 7 C 1.53878 * 110.02823 * 121.41736 * 2 1 3 8 8 H 1.09003 * 110.02832 * 238.61784 * 7 2 1 9 9 C 1.52997 * 110.03218 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47010 * 184.30850 * 9 7 2 11 11 C 1.46896 * 111.00263 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47432 * 180.02562 * 11 10 9 13 13 C 1.38285 * 119.92448 * 89.99648 * 12 11 10 14 14 C 1.38108 * 120.07354 * 179.97438 * 13 12 11 15 15 C 1.38915 * 119.92598 * 0.02562 * 14 13 12 16 16 N 1.39668 * 120.07520 * 179.97438 * 15 14 13 17 17 C 1.46502 * 120.00128 * 359.97438 * 16 15 14 18 18 C 1.46499 * 120.00213 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46992 * 269.99719 * 18 16 15 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 16 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 C 1.38909 * 119.84783 * 0.24869 * 15 14 13 28 28 C 1.38106 * 119.92498 * 359.49656 * 27 15 14 29 29 H 1.08999 * 109.46767 * 298.58544 * 1 2 3 30 30 H 1.09008 * 109.46706 * 58.58031 * 1 2 3 31 31 H 1.09000 * 109.46943 * 178.58269 * 1 2 3 32 32 H 1.09005 * 110.45988 * 98.42402 * 4 2 1 33 33 H 1.09001 * 110.51055 * 335.78672 * 4 2 1 34 34 H 1.09001 * 110.75660 * 279.65477 * 5 4 2 35 35 H 1.08997 * 110.91226 * 156.36312 * 5 4 2 36 36 H 1.08994 * 110.48935 * 203.37894 * 6 5 4 37 37 H 1.09001 * 110.60174 * 80.78878 * 6 5 4 38 38 H 1.08996 * 109.46974 * 64.31333 * 9 7 2 39 39 H 1.08997 * 109.47363 * 304.30876 * 9 7 2 40 40 H 1.00903 * 110.99942 * 56.04432 * 10 9 7 41 41 H 1.09001 * 109.46934 * 59.99960 * 11 10 9 42 42 H 1.08997 * 109.47226 * 300.00009 * 11 10 9 43 43 H 1.07997 * 119.96277 * 359.96620 * 13 12 11 44 44 H 1.07999 * 120.03543 * 179.97438 * 14 13 12 45 45 H 1.08996 * 109.47461 * 270.00413 * 17 16 15 46 46 H 1.08998 * 109.46888 * 30.00182 * 17 16 15 47 47 H 1.08994 * 109.47490 * 150.00244 * 17 16 15 48 48 H 1.09002 * 109.47391 * 149.99710 * 18 16 15 49 49 H 1.09001 * 109.46813 * 29.99766 * 18 16 15 50 50 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 51 51 H 1.08004 * 120.03453 * 179.72289 * 27 15 14 52 52 H 1.08008 * 119.96053 * 180.24920 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3146 -1.5015 -0.7181 6 6 2.8882 -1.9406 0.7046 7 6 2.0571 -0.7536 1.2338 8 1 2.6860 -0.0951 1.8330 9 6 0.8861 -1.2663 2.0744 10 7 1.4003 -1.8928 3.2997 11 6 0.3016 -2.3986 4.1333 12 6 0.8664 -3.0322 5.3785 13 6 1.0668 -2.2663 6.5123 14 6 1.5837 -2.8439 7.6553 15 6 1.9031 -4.1958 7.6650 16 7 2.4265 -4.7831 8.8191 17 6 2.6400 -3.9731 10.0210 18 6 2.7622 -6.2091 8.8277 19 6 1.5618 -7.0050 9.2712 20 1 0.6409 -6.4993 9.5212 21 6 1.6390 -8.3790 9.3569 22 7 0.5913 -9.0735 9.7434 23 14 3.2317 -9.2537 8.9238 24 1 4.0742 -9.3790 10.1402 25 1 2.9250 -10.6062 8.3928 26 1 3.9620 -8.4715 7.8942 27 6 1.7059 -4.9610 6.5226 28 6 1.1836 -4.3782 5.3846 29 1 -0.3633 0.4917 0.9024 30 1 -0.3633 0.5358 -0.8771 31 1 -0.3633 -1.0274 -0.0254 32 1 2.3303 -0.0557 -2.0258 33 1 1.3154 -1.4682 -1.5964 34 1 4.1716 -0.8294 -0.6744 35 1 3.5372 -2.3688 -1.3397 36 1 3.7643 -2.1028 1.3324 37 1 2.2790 -2.8434 0.6608 38 1 0.3210 -2.0007 1.5005 39 1 0.2356 -0.4325 2.3381 40 1 1.9816 -1.2509 3.8175 41 1 -0.2673 -3.1409 3.5735 42 1 -0.3533 -1.5729 4.4114 43 1 0.8188 -1.2152 6.5039 44 1 1.7403 -2.2450 8.5403 45 1 3.6443 -3.5501 10.0005 46 1 1.9068 -3.1671 10.0508 47 1 2.5276 -4.5993 10.9059 48 1 3.5887 -6.3837 9.5166 49 1 3.0537 -6.5198 7.8244 50 1 0.6457 -10.0401 9.8040 51 1 1.9573 -6.0114 6.5254 52 1 1.0263 -4.9735 4.4973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798503179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:16 Heat of formation + Delta-G solvation = 16.283960 kcal Electronic energy + Delta-G solvation = -25938.732061 eV Core-core repulsion = 22516.070224 eV Total energy + Delta-G solvation = -3422.661838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.43761 -38.98214 -36.46843 -34.87751 -32.63224 -31.68635 -30.79257 -30.53171 -28.82705 -28.25590 -25.94286 -25.21064 -24.20111 -23.15240 -21.94463 -21.42842 -20.91820 -19.61070 -18.84391 -16.94338 -16.71073 -16.46018 -15.84068 -15.24873 -14.85617 -14.68159 -14.52930 -14.29533 -14.06027 -13.82367 -13.59268 -13.35255 -13.18443 -12.95611 -12.77619 -12.49552 -12.39307 -12.04587 -11.91565 -11.80248 -11.56483 -11.48675 -11.20821 -11.05882 -10.98902 -10.93881 -10.88247 -10.74500 -10.64787 -10.54248 -10.39922 -10.27927 -9.99204 -9.59023 -8.90031 -8.66042 -8.34044 -8.28047 -6.40873 -6.14362 -4.14323 2.08022 2.18400 3.21777 3.30271 3.31435 4.05382 4.10927 4.32720 4.35713 4.41169 4.49942 4.72171 4.98742 5.07426 5.15043 5.16140 5.20734 5.26459 5.30664 5.33631 5.38123 5.41411 5.53479 5.55492 5.62129 5.63928 5.70039 5.73912 5.77312 5.78557 5.85133 5.92420 5.96685 5.98527 6.02882 6.14731 6.19255 6.22944 6.30209 6.32740 6.38512 6.55360 6.73646 6.77783 6.97170 7.06696 7.08364 7.28660 7.44393 7.52659 7.55238 8.05016 8.34614 8.51618 8.93135 9.45557 10.98669 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002348 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.078748 B =11923.605637 C =12575.670051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.105 4.105 7 C -0.086 4.086 8 H 0.067 0.933 9 C 0.063 3.937 10 N -0.685 5.685 11 C 0.116 3.884 12 C -0.168 4.168 13 C -0.068 4.068 14 C -0.218 4.218 15 C 0.241 3.759 16 N -0.612 5.612 17 C 0.098 3.902 18 C 0.220 3.780 19 C -0.534 4.534 20 H 0.076 0.924 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.872 3.128 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.264 1.264 27 C -0.188 4.188 28 C -0.050 4.050 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.339 0.661 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.036 0.964 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.023 0.977 49 H 0.032 0.968 50 H 0.265 0.735 51 H 0.128 0.872 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 18.576 -17.497 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.157 4.157 5 C -0.167 4.167 6 C -0.143 4.143 7 C -0.105 4.105 8 H 0.086 0.914 9 C -0.066 4.066 10 N -0.316 5.316 11 C -0.013 4.013 12 C -0.171 4.171 13 C -0.088 4.088 14 C -0.241 4.241 15 C 0.135 3.865 16 N -0.318 5.318 17 C -0.046 4.046 18 C 0.099 3.901 19 C -0.573 4.573 20 H 0.094 0.906 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.699 3.301 24 H -0.201 1.201 25 H -0.209 1.209 26 H -0.189 1.189 27 C -0.210 4.210 28 C -0.069 4.069 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.156 0.844 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.123 0.877 44 H 0.131 0.869 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.041 0.959 49 H 0.050 0.950 50 H 0.075 0.925 51 H 0.146 0.854 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.031 17.663 -17.553 25.085 hybrid contribution 0.308 0.176 0.384 0.523 sum 3.339 17.839 -17.169 24.983 Atomic orbital electron populations 1.21989 0.95257 1.02005 1.01372 1.21775 0.95654 0.99051 0.94619 0.91335 1.22458 0.97527 0.98823 0.96891 1.22535 0.97405 0.99715 0.97091 1.22268 0.99544 0.97645 0.94817 1.21788 0.96386 0.96854 0.95467 0.91405 1.22244 0.95842 0.96927 0.91589 1.60529 1.21540 1.42200 1.07291 1.20635 0.91554 0.97562 0.91503 1.19199 1.08837 0.94375 0.94708 1.20515 0.97736 0.98011 0.92491 1.20511 1.10447 0.93913 0.99244 1.17911 0.90333 0.91367 0.86903 1.46705 1.66336 1.09674 1.09040 1.21491 0.99121 0.95491 0.88453 1.19662 0.96301 0.76911 0.97234 1.21477 0.98618 0.91453 1.45725 0.90587 1.24906 0.96258 0.97328 0.94585 1.69902 1.29374 1.06957 1.47061 0.86905 0.84153 0.79636 0.79392 1.20068 1.20906 1.18873 1.20838 1.07059 1.00593 0.92552 1.20635 0.95708 0.93823 0.96746 0.92458 0.93136 0.92205 0.92137 0.91584 0.91892 0.91807 0.91600 0.91225 0.90949 0.95342 0.84363 0.91058 0.95517 0.87674 0.86859 0.94560 0.92428 0.91286 0.95904 0.94986 0.92511 0.85431 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.89 37.16 0.29 -0.73 16 2 C -0.09 -0.67 3.51 -89.44 -0.31 -0.99 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.85 6.36 -25.02 -0.16 -1.01 16 5 C -0.13 -1.00 6.91 -24.74 -0.17 -1.17 16 6 C -0.11 -0.95 6.18 -25.08 -0.15 -1.10 16 7 C -0.09 -0.72 3.09 -89.50 -0.28 -1.00 16 8 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.06 0.58 3.78 -3.82 -0.01 0.56 16 10 N -0.68 -7.63 6.29 -115.07 -0.72 -8.35 16 11 C 0.12 1.43 5.81 -4.98 -0.03 1.40 16 12 C -0.17 -2.57 5.39 -104.59 -0.56 -3.13 16 13 C -0.07 -1.04 9.69 -39.61 -0.38 -1.42 16 14 C -0.22 -3.74 9.21 -39.38 -0.36 -4.10 16 15 C 0.24 4.83 6.55 -83.79 -0.55 4.28 16 16 N -0.61 -12.84 2.99 -181.00 -0.54 -13.38 16 17 C 0.10 1.69 10.19 59.85 0.61 2.30 16 18 C 0.22 5.20 3.99 -5.19 -0.02 5.18 16 19 C -0.53 -14.86 9.94 -34.44 -0.34 -15.20 16 20 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 23 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 27 C -0.19 -3.77 9.21 -39.38 -0.36 -4.13 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 29 H 0.06 0.40 6.63 -51.93 -0.34 0.05 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 31 H 0.06 0.43 6.84 -51.93 -0.35 0.08 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 7.84 -51.93 -0.41 0.07 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 38 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16 39 H 0.03 0.25 6.47 -51.93 -0.34 -0.08 16 40 H 0.34 3.70 8.72 -39.29 -0.34 3.36 16 41 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 43 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.11 1.75 6.14 -52.49 -0.32 1.42 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 47 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 48 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 49 H 0.03 0.77 5.24 -51.93 -0.27 0.49 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.13 2.76 6.14 -52.48 -0.32 2.44 16 52 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -29.57 398.54 -11.69 -41.26 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -9.25 Total: 4.18 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -3.28 Total: -19.58 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.49 Total: -47.98 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.57 -11.69 -41.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.542 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds