Wall clock time and date at job start Tue Mar 31 2020 11:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.05432 * 2 1 4 4 C 1.54369 * 110.04502 * 238.52540 * 2 1 3 5 5 C 1.54892 * 104.19467 * 217.09146 * 4 2 1 6 6 C 1.54880 * 102.75037 * 37.97256 * 5 4 2 7 7 C 1.53878 * 110.02823 * 121.41736 * 2 1 3 8 8 H 1.09003 * 110.02832 * 238.61784 * 7 2 1 9 9 C 1.52997 * 110.03218 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47010 * 184.30850 * 9 7 2 11 11 C 1.46896 * 111.00263 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47432 * 180.02562 * 11 10 9 13 13 C 1.38285 * 119.92448 * 89.99648 * 12 11 10 14 14 C 1.38108 * 120.07354 * 179.97438 * 13 12 11 15 15 C 1.38915 * 119.92598 * 0.02562 * 14 13 12 16 16 N 1.39668 * 120.07520 * 179.97438 * 15 14 13 17 17 C 1.46502 * 120.00128 * 359.97438 * 16 15 14 18 18 C 1.46499 * 120.00213 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46992 * 269.99719 * 18 16 15 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 16 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 C 1.38909 * 119.84783 * 0.24869 * 15 14 13 28 28 C 1.38106 * 119.92498 * 359.49656 * 27 15 14 29 29 H 1.08999 * 109.46767 * 298.58544 * 1 2 3 30 30 H 1.09008 * 109.46706 * 58.58031 * 1 2 3 31 31 H 1.09000 * 109.46943 * 178.58269 * 1 2 3 32 32 H 1.09005 * 110.45988 * 98.42402 * 4 2 1 33 33 H 1.09001 * 110.51055 * 335.78672 * 4 2 1 34 34 H 1.09001 * 110.75660 * 279.65477 * 5 4 2 35 35 H 1.08997 * 110.91226 * 156.36312 * 5 4 2 36 36 H 1.08994 * 110.48935 * 203.37894 * 6 5 4 37 37 H 1.09001 * 110.60174 * 80.78878 * 6 5 4 38 38 H 1.08996 * 109.46974 * 64.31333 * 9 7 2 39 39 H 1.08997 * 109.47363 * 304.30876 * 9 7 2 40 40 H 1.00903 * 110.99942 * 56.04432 * 10 9 7 41 41 H 1.09001 * 109.46934 * 59.99960 * 11 10 9 42 42 H 1.08997 * 109.47226 * 300.00009 * 11 10 9 43 43 H 1.07997 * 119.96277 * 359.96620 * 13 12 11 44 44 H 1.07999 * 120.03543 * 179.97438 * 14 13 12 45 45 H 1.08996 * 109.47461 * 270.00413 * 17 16 15 46 46 H 1.08998 * 109.46888 * 30.00182 * 17 16 15 47 47 H 1.08994 * 109.47490 * 150.00244 * 17 16 15 48 48 H 1.09002 * 109.47391 * 149.99710 * 18 16 15 49 49 H 1.09001 * 109.46813 * 29.99766 * 18 16 15 50 50 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 51 51 H 1.08004 * 120.03453 * 179.72289 * 27 15 14 52 52 H 1.08008 * 119.96053 * 180.24920 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3146 -1.5015 -0.7181 6 6 2.8882 -1.9406 0.7046 7 6 2.0571 -0.7536 1.2338 8 1 2.6860 -0.0951 1.8330 9 6 0.8861 -1.2663 2.0744 10 7 1.4003 -1.8928 3.2997 11 6 0.3016 -2.3986 4.1333 12 6 0.8664 -3.0322 5.3785 13 6 1.0668 -2.2663 6.5123 14 6 1.5837 -2.8439 7.6553 15 6 1.9031 -4.1958 7.6650 16 7 2.4265 -4.7831 8.8191 17 6 2.6400 -3.9731 10.0210 18 6 2.7622 -6.2091 8.8277 19 6 1.5618 -7.0050 9.2712 20 1 0.6409 -6.4993 9.5212 21 6 1.6390 -8.3790 9.3569 22 7 0.5913 -9.0735 9.7434 23 14 3.2317 -9.2537 8.9238 24 1 4.0742 -9.3790 10.1402 25 1 2.9250 -10.6062 8.3928 26 1 3.9620 -8.4715 7.8942 27 6 1.7059 -4.9610 6.5226 28 6 1.1836 -4.3782 5.3846 29 1 -0.3633 0.4917 0.9024 30 1 -0.3633 0.5358 -0.8771 31 1 -0.3633 -1.0274 -0.0254 32 1 2.3303 -0.0557 -2.0258 33 1 1.3154 -1.4682 -1.5964 34 1 4.1716 -0.8294 -0.6744 35 1 3.5372 -2.3688 -1.3397 36 1 3.7643 -2.1028 1.3324 37 1 2.2790 -2.8434 0.6608 38 1 0.3210 -2.0007 1.5005 39 1 0.2356 -0.4325 2.3381 40 1 1.9816 -1.2509 3.8175 41 1 -0.2673 -3.1409 3.5735 42 1 -0.3533 -1.5729 4.4114 43 1 0.8188 -1.2152 6.5039 44 1 1.7403 -2.2450 8.5403 45 1 3.6443 -3.5501 10.0005 46 1 1.9068 -3.1671 10.0508 47 1 2.5276 -4.5993 10.9059 48 1 3.5887 -6.3837 9.5166 49 1 3.0537 -6.5198 7.8244 50 1 0.6457 -10.0401 9.8040 51 1 1.9573 -6.0114 6.5254 52 1 1.0263 -4.9735 4.4973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798503179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:15 Heat of formation + Delta-G solvation = 0.799089 kcal Electronic energy + Delta-G solvation = -25939.403536 eV Core-core repulsion = 22516.070224 eV Total energy + Delta-G solvation = -3423.333312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52130 -39.94208 -37.77146 -36.01169 -34.68441 -32.38956 -31.99358 -31.79148 -30.24475 -29.58799 -27.18250 -25.94614 -25.48901 -24.21346 -23.29098 -22.93283 -21.54649 -21.02265 -19.53731 -19.08637 -18.16692 -17.11699 -16.93873 -16.66952 -16.11159 -15.80889 -15.59874 -15.43859 -15.15401 -15.02669 -14.80178 -14.47643 -14.35814 -14.33269 -14.21560 -13.56211 -13.35250 -13.17490 -13.14794 -13.02645 -12.95894 -12.69630 -12.60903 -12.43174 -12.13693 -11.96341 -11.80282 -11.73811 -11.61317 -11.52376 -11.45838 -11.39552 -11.32195 -11.06601 -10.82838 -10.41051 -9.67325 -9.18084 -8.34130 -7.91175 -6.39265 0.70424 0.82859 1.32910 1.35337 1.45822 2.30003 2.54277 2.99627 3.02164 3.49097 3.74446 3.79604 3.92717 4.05228 4.13390 4.21356 4.37656 4.40863 4.44251 4.48393 4.55912 4.61405 4.62513 4.68023 4.71041 4.74148 4.77950 4.79385 4.80278 4.84429 4.91509 4.96544 4.97871 5.05841 5.07670 5.08992 5.15472 5.18682 5.29808 5.32808 5.41295 5.45269 5.46392 5.57695 5.60006 5.63708 5.64591 5.92933 6.08776 6.17809 6.25975 6.58516 6.59469 6.69341 6.87131 7.26161 8.83294 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002348 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.078748 B =11923.605637 C =12575.670051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.083 4.083 8 H 0.068 0.932 9 C 0.068 3.932 10 N -0.692 5.692 11 C 0.122 3.878 12 C -0.157 4.157 13 C -0.062 4.062 14 C -0.215 4.215 15 C 0.211 3.789 16 N -0.629 5.629 17 C 0.097 3.903 18 C 0.231 3.769 19 C -0.535 4.535 20 H 0.025 0.975 21 C 0.011 3.989 22 N -0.946 5.946 23 Si 0.947 3.053 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.248 1.248 27 C -0.217 4.217 28 C -0.057 4.057 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.342 0.658 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.034 0.966 49 H 0.030 0.970 50 H 0.268 0.732 51 H 0.099 0.901 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 21.082 -19.013 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.166 4.166 6 C -0.144 4.144 7 C -0.102 4.102 8 H 0.086 0.914 9 C -0.060 4.060 10 N -0.324 5.324 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.081 4.081 14 C -0.238 4.238 15 C 0.106 3.894 16 N -0.337 5.337 17 C -0.046 4.046 18 C 0.108 3.892 19 C -0.574 4.574 20 H 0.043 0.957 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.769 3.231 24 H -0.185 1.185 25 H -0.207 1.207 26 H -0.171 1.171 27 C -0.240 4.240 28 C -0.077 4.077 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.160 0.840 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.052 0.948 49 H 0.047 0.953 50 H 0.077 0.923 51 H 0.117 0.883 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.131 20.220 -19.085 28.109 hybrid contribution -0.158 -0.487 0.785 0.937 sum 3.972 19.732 -18.300 27.204 Atomic orbital electron populations 1.21968 0.94850 1.01823 1.01813 1.21766 0.95959 0.99154 0.93968 0.90693 1.22456 0.97077 0.98902 0.97107 1.22528 0.97915 0.99945 0.96207 1.22232 0.98991 0.97489 0.95652 1.21761 0.95985 0.96567 0.95845 0.91359 1.22228 0.96177 0.96935 0.90680 1.60465 1.21319 1.42929 1.07666 1.20564 0.91872 0.97951 0.90296 1.19546 1.06821 0.93472 0.96093 1.20920 0.96108 0.99676 0.91433 1.20793 1.09555 0.92728 1.00717 1.18210 0.91791 0.92763 0.86611 1.46690 1.67643 1.08798 1.10605 1.21637 1.01113 0.95257 0.86596 1.19335 0.94449 0.78534 0.96837 1.21656 0.98372 0.92046 1.45317 0.95703 1.25876 1.00305 0.98174 0.94338 1.70066 1.32153 1.07442 1.48911 0.85725 0.79308 0.78078 0.79959 1.18503 1.20676 1.17125 1.20802 1.09347 0.99604 0.94248 1.20797 0.95580 0.95119 0.96158 0.92332 0.92392 0.92701 0.91128 0.91756 0.91455 0.91722 0.92752 0.92595 0.91443 0.94350 0.84016 0.91193 0.93836 0.84039 0.84902 0.92001 0.90762 0.92573 0.94782 0.95250 0.92314 0.88314 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 7.89 71.98 0.57 -1.13 16 2 C -0.09 -1.11 3.51 -10.03 -0.04 -1.14 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.45 6.36 31.71 0.20 -1.25 16 5 C -0.13 -1.79 6.91 31.88 0.22 -1.57 16 6 C -0.11 -1.80 6.18 31.67 0.20 -1.61 16 7 C -0.08 -1.23 3.09 -10.07 -0.03 -1.26 16 8 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 9 C 0.07 1.11 3.78 86.30 0.33 1.43 16 10 N -0.69 -13.87 6.29 -517.96 -3.26 -17.13 16 11 C 0.12 2.69 5.81 85.56 0.50 3.19 16 12 C -0.16 -4.48 5.39 -19.84 -0.11 -4.59 16 13 C -0.06 -1.72 9.69 22.25 0.22 -1.50 16 14 C -0.22 -7.00 9.21 22.40 0.21 -6.79 16 15 C 0.21 8.47 6.55 38.22 0.25 8.72 16 16 N -0.63 -26.68 2.99 -726.57 -2.17 -28.86 16 17 C 0.10 3.25 10.19 127.77 1.30 4.55 16 18 C 0.23 11.12 3.99 85.63 0.34 11.47 16 19 C -0.54 -31.11 9.94 25.60 0.25 -30.86 16 20 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 21 C 0.01 0.64 5.47 84.66 0.46 1.11 16 22 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 23 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 27 C -0.22 -8.98 9.21 22.40 0.21 -8.78 16 28 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 29 H 0.06 0.66 6.63 -2.39 -0.02 0.64 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.69 6.84 -2.39 -0.02 0.67 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.82 7.84 -2.39 -0.02 0.80 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.10 7.77 -2.39 -0.02 1.08 16 38 H 0.07 1.18 6.88 -2.39 -0.02 1.17 16 39 H 0.04 0.57 6.47 -2.39 -0.02 0.55 16 40 H 0.34 6.55 8.72 -89.69 -0.78 5.76 16 41 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 42 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 43 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.13 3.72 6.14 -2.91 -0.02 3.71 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.19 6.20 -2.39 -0.01 2.17 16 47 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 48 H 0.03 1.56 7.50 -2.39 -0.02 1.54 16 49 H 0.03 1.43 5.24 -2.39 -0.01 1.42 16 50 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.10 4.55 6.14 -2.91 -0.02 4.53 16 52 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -66.98 398.54 2.09 -64.89 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.05 Total: 26.55 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.29 Total: -31.76 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -5.13 Total: -105.05 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -66.98 2.09 -64.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.691 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds