Wall clock time and date at job start Tue Mar 31 2020 11:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.05685 * 2 1 4 4 C 1.54269 * 110.03366 * 121.42268 * 2 1 3 5 5 C 1.54883 * 104.19561 * 142.89272 * 4 2 1 6 6 C 1.54892 * 102.75238 * 322.05609 * 5 4 2 7 7 C 1.53879 * 110.02965 * 238.58686 * 2 1 3 8 8 H 1.09006 * 110.07079 * 121.41108 * 7 2 1 9 9 C 1.52999 * 110.03319 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47084 * 176.37856 * 9 7 2 11 11 C 1.46900 * 111.00018 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38285 * 119.92471 * 89.99748 * 12 11 10 14 14 C 1.38097 * 120.07415 * 180.02562 * 13 12 11 15 15 C 1.38910 * 119.92424 * 0.02562 * 14 13 12 16 16 N 1.39676 * 120.07373 * 179.97438 * 15 14 13 17 17 C 1.46506 * 120.00128 * 0.02562 * 16 15 14 18 18 C 1.46496 * 120.00113 * 179.97438 * 16 15 14 19 19 C 1.50695 * 109.47390 * 270.00147 * 18 16 15 20 20 H 1.08001 * 120.00425 * 0.02562 * 19 18 16 21 21 C 1.37885 * 119.99997 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99438 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00098 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46633 * 89.99782 * 23 21 19 25 25 H 1.48493 * 109.46760 * 209.99955 * 23 21 19 26 26 H 1.48500 * 109.46782 * 329.99966 * 23 21 19 27 27 C 1.38905 * 119.85186 * 0.25085 * 15 14 13 28 28 C 1.38100 * 119.92673 * 359.49705 * 27 15 14 29 29 H 1.08992 * 109.47259 * 181.41170 * 1 2 3 30 30 H 1.08996 * 109.47094 * 301.41485 * 1 2 3 31 31 H 1.09004 * 109.47149 * 61.41293 * 1 2 3 32 32 H 1.08995 * 110.48331 * 24.21256 * 4 2 1 33 33 H 1.08995 * 110.59595 * 261.62470 * 4 2 1 34 34 H 1.09000 * 110.75797 * 203.74505 * 5 4 2 35 35 H 1.09003 * 110.75931 * 80.37229 * 5 4 2 36 36 H 1.08997 * 110.48564 * 279.26535 * 6 5 4 37 37 H 1.08996 * 110.59903 * 156.67413 * 6 5 4 38 38 H 1.09004 * 109.47268 * 56.37934 * 9 7 2 39 39 H 1.08999 * 109.47014 * 296.38010 * 9 7 2 40 40 H 1.00900 * 111.00124 * 56.04522 * 10 9 7 41 41 H 1.08999 * 109.46771 * 59.99772 * 11 10 9 42 42 H 1.08996 * 109.46843 * 300.00031 * 11 10 9 43 43 H 1.08003 * 119.95973 * 0.04737 * 13 12 11 44 44 H 1.08002 * 120.03523 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.47060 * 270.00231 * 17 16 15 46 46 H 1.09004 * 109.47073 * 29.99719 * 17 16 15 47 47 H 1.09000 * 109.47212 * 149.99802 * 17 16 15 48 48 H 1.09001 * 109.47057 * 30.00662 * 18 16 15 49 49 H 1.08999 * 109.47333 * 150.00222 * 18 16 15 50 50 H 0.97003 * 119.99670 * 179.97438 * 22 21 19 51 51 H 1.08002 * 120.03617 * 179.72361 * 27 15 14 52 52 H 1.08004 * 119.96780 * 180.25205 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7556 1.2368 5 6 3.3136 -1.5008 0.7190 6 6 2.8874 -1.9407 -0.7037 7 6 2.0570 -0.7535 -1.2338 8 1 2.6865 -0.0957 -1.8332 9 6 0.8861 -1.2662 -2.0746 10 7 1.4010 -1.9072 -3.2920 11 6 0.3023 -2.4133 -4.1255 12 6 0.8680 -3.0620 -5.3626 13 6 1.1760 -4.4101 -5.3552 14 6 1.6950 -5.0075 -6.4869 15 6 1.9080 -4.2526 -7.6334 16 7 2.4332 -4.8536 -8.7796 17 6 2.7597 -6.2818 -8.7739 18 6 2.6567 -4.0560 -9.9880 19 6 1.4181 -4.0860 -10.8459 20 1 0.5510 -4.6431 -10.5232 21 6 1.3916 -3.4014 -12.0424 22 7 0.3108 -3.4280 -12.7913 23 14 2.8911 -2.4372 -12.6004 24 1 3.7727 -3.3174 -13.4087 25 1 2.4572 -1.2802 -13.4239 26 1 3.6352 -1.9479 -11.4121 27 6 1.6028 -2.8975 -7.6355 28 6 1.0792 -2.3074 -6.5020 29 1 -0.3633 -1.0273 0.0253 30 1 -0.3633 0.5356 0.8770 31 1 -0.3634 0.4917 -0.9024 32 1 1.3143 -1.4661 1.5965 33 1 2.3294 -0.0555 2.0270 34 1 3.5325 -2.3680 1.3420 35 1 4.1710 -0.8292 0.6750 36 1 2.2771 -2.8426 -0.6574 37 1 3.7624 -2.1051 -1.3325 38 1 0.2421 -0.4305 -2.3485 39 1 0.3137 -1.9915 -1.4963 40 1 2.0515 -2.6444 -3.0650 41 1 -0.3460 -1.5859 -4.4136 42 1 -0.2736 -3.1467 -3.5612 43 1 1.0102 -4.9964 -4.4635 44 1 1.9350 -6.0605 -6.4806 45 1 3.7920 -6.4173 -8.4512 46 1 2.0930 -6.8041 -8.0877 47 1 2.6369 -6.6866 -9.7785 48 1 2.8798 -3.0266 -9.7077 49 1 3.4958 -4.4704 -10.5468 50 1 0.2919 -2.9461 -13.6329 51 1 1.7714 -2.3068 -8.5238 52 1 0.8379 -1.2547 -6.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798503180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:18 Heat of formation + Delta-G solvation = 15.671475 kcal Electronic energy + Delta-G solvation = -25927.877133 eV Core-core repulsion = 22505.188736 eV Total energy + Delta-G solvation = -3422.688397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.50949 -38.99267 -36.46071 -34.87082 -32.63062 -31.75706 -30.82434 -30.53224 -28.82462 -28.25161 -25.94284 -25.26234 -24.21318 -23.24406 -21.96053 -21.43386 -20.93239 -19.59237 -18.77757 -16.94577 -16.79771 -16.60722 -15.73700 -15.32056 -15.01534 -14.77766 -14.39403 -14.30809 -13.94453 -13.76027 -13.66641 -13.29530 -13.20887 -12.98922 -12.83956 -12.51232 -12.39389 -12.35087 -11.86713 -11.74639 -11.56361 -11.48719 -11.31515 -11.06233 -11.03949 -10.97777 -10.87346 -10.75272 -10.64818 -10.55534 -10.44069 -10.27874 -9.99163 -9.58930 -8.90044 -8.65925 -8.35735 -8.28599 -6.40851 -6.14276 -4.14221 2.08058 2.18357 3.21872 3.30331 3.31508 4.05431 4.10664 4.28888 4.32796 4.36794 4.47825 4.69940 4.99067 5.05939 5.07341 5.16180 5.17325 5.23445 5.29014 5.31651 5.34733 5.37548 5.52319 5.53142 5.55902 5.58496 5.66720 5.69838 5.75892 5.77144 5.82443 5.86147 5.95740 5.96858 6.02804 6.06695 6.09846 6.22939 6.24224 6.32771 6.38551 6.55376 6.73739 6.77885 6.97333 7.06740 7.08493 7.28726 7.44828 7.52712 7.55272 8.05090 8.34651 8.51683 8.93209 9.45618 10.98731 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.002256 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.608032 B =12406.299185 C =12789.022961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.087 4.087 8 H 0.080 0.920 9 C 0.063 3.937 10 N -0.686 5.686 11 C 0.115 3.885 12 C -0.169 4.169 13 C -0.068 4.068 14 C -0.218 4.218 15 C 0.241 3.759 16 N -0.612 5.612 17 C 0.098 3.902 18 C 0.220 3.780 19 C -0.534 4.534 20 H 0.076 0.924 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.873 3.127 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.264 1.264 27 C -0.188 4.188 28 C -0.050 4.050 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.339 0.661 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.036 0.964 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.032 0.968 49 H 0.023 0.977 50 H 0.265 0.735 51 H 0.128 0.872 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 3.172 25.910 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.159 4.159 7 C -0.106 4.106 8 H 0.099 0.901 9 C -0.066 4.066 10 N -0.317 5.317 11 C -0.013 4.013 12 C -0.172 4.172 13 C -0.088 4.088 14 C -0.241 4.241 15 C 0.135 3.865 16 N -0.318 5.318 17 C -0.046 4.046 18 C 0.099 3.901 19 C -0.573 4.573 20 H 0.094 0.906 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.699 3.301 24 H -0.201 1.201 25 H -0.209 1.209 26 H -0.189 1.189 27 C -0.210 4.210 28 C -0.069 4.069 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.123 0.877 44 H 0.132 0.868 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.050 0.950 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.146 0.854 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.776 3.731 25.169 25.722 hybrid contribution 0.323 -0.337 -0.106 0.479 sum 4.100 3.394 25.063 25.622 Atomic orbital electron populations 1.21985 0.95236 1.01872 1.01556 1.21750 0.95695 0.99265 0.94337 0.91093 1.22451 0.97365 0.98891 0.97096 1.22479 0.97686 0.99763 0.96379 1.22440 0.99696 0.97716 0.96050 1.21821 0.96539 0.96933 0.95299 0.90133 1.22228 0.96132 0.98300 0.89926 1.60581 1.17216 1.35685 1.18261 1.20645 0.91931 0.97216 0.91541 1.19205 1.08840 0.93787 0.95327 1.20513 0.97538 0.93977 0.96731 1.20507 1.10741 0.99357 0.93493 1.17910 0.90339 0.91958 0.86304 1.46708 1.66195 1.08050 1.10800 1.21495 0.98490 0.82204 1.02367 1.19660 0.96904 0.91210 0.82340 1.21478 0.99847 1.32287 1.03658 0.90587 1.24910 0.95925 0.95999 0.96258 1.69905 1.27739 1.42604 1.13040 0.86902 0.83469 0.80318 0.79385 1.20068 1.20905 1.18878 1.20837 1.06706 0.93893 0.99600 1.20639 0.95951 0.98561 0.91772 0.92409 0.93121 0.92204 0.91713 0.91979 0.91828 0.91558 0.91994 0.91365 0.90865 0.95394 0.84266 0.91016 0.95493 0.87679 0.86845 0.94555 0.92429 0.91283 0.94982 0.95900 0.92515 0.85417 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.88 37.16 0.29 -0.74 16 2 C -0.09 -0.67 3.50 -89.50 -0.31 -0.98 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.81 6.36 -25.07 -0.16 -0.97 16 5 C -0.13 -0.87 6.91 -24.74 -0.17 -1.04 16 6 C -0.12 -0.96 5.50 -25.07 -0.14 -1.10 16 7 C -0.09 -0.73 3.16 -89.50 -0.28 -1.02 16 8 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.06 0.59 3.85 -3.82 -0.01 0.57 16 10 N -0.69 -7.83 6.49 -115.05 -0.75 -8.58 16 11 C 0.11 1.44 5.81 -4.97 -0.03 1.41 16 12 C -0.17 -2.60 5.40 -104.59 -0.56 -3.16 16 13 C -0.07 -1.04 9.69 -39.62 -0.38 -1.43 16 14 C -0.22 -3.75 9.21 -39.38 -0.36 -4.11 16 15 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 16 N -0.61 -12.85 2.99 -181.00 -0.54 -13.39 16 17 C 0.10 1.69 10.19 59.85 0.61 2.30 16 18 C 0.22 5.20 3.99 -5.20 -0.02 5.18 16 19 C -0.53 -14.87 9.94 -34.44 -0.34 -15.21 16 20 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 22 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 23 Si 0.87 20.79 27.47 -169.99 -4.67 16.12 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 27 C -0.19 -3.78 9.21 -39.38 -0.36 -4.14 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 29 H 0.06 0.41 6.81 -51.93 -0.35 0.06 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 6.65 -51.93 -0.35 0.08 16 32 H 0.06 0.43 7.84 -51.93 -0.41 0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.50 7.78 -51.93 -0.40 0.10 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.70 6.51 -51.93 -0.34 0.36 16 39 H 0.03 0.26 6.86 -51.93 -0.36 -0.10 16 40 H 0.34 3.80 7.90 -39.29 -0.31 3.48 16 41 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 43 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 44 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 47 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 48 H 0.03 0.77 5.24 -51.93 -0.27 0.49 16 49 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.13 2.77 6.14 -52.49 -0.32 2.44 16 52 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -29.70 397.39 -11.69 -41.39 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -9.22 Total: 4.18 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.27 Total: -19.45 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.51 Total: -48.22 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.70 -11.69 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.060 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds