Wall clock time and date at job start Tue Mar 31 2020 11:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.05685 * 2 1 4 4 C 1.54269 * 110.03366 * 121.42268 * 2 1 3 5 5 C 1.54883 * 104.19561 * 142.89272 * 4 2 1 6 6 C 1.54892 * 102.75238 * 322.05609 * 5 4 2 7 7 C 1.53879 * 110.02965 * 238.58686 * 2 1 3 8 8 H 1.09006 * 110.07079 * 121.41108 * 7 2 1 9 9 C 1.52999 * 110.03319 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47084 * 176.37856 * 9 7 2 11 11 C 1.46900 * 111.00018 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38285 * 119.92471 * 89.99748 * 12 11 10 14 14 C 1.38097 * 120.07415 * 180.02562 * 13 12 11 15 15 C 1.38910 * 119.92424 * 0.02562 * 14 13 12 16 16 N 1.39676 * 120.07373 * 179.97438 * 15 14 13 17 17 C 1.46506 * 120.00128 * 0.02562 * 16 15 14 18 18 C 1.46496 * 120.00113 * 179.97438 * 16 15 14 19 19 C 1.50695 * 109.47390 * 270.00147 * 18 16 15 20 20 H 1.08001 * 120.00425 * 0.02562 * 19 18 16 21 21 C 1.37885 * 119.99997 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99438 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00098 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46633 * 89.99782 * 23 21 19 25 25 H 1.48493 * 109.46760 * 209.99955 * 23 21 19 26 26 H 1.48500 * 109.46782 * 329.99966 * 23 21 19 27 27 C 1.38905 * 119.85186 * 0.25085 * 15 14 13 28 28 C 1.38100 * 119.92673 * 359.49705 * 27 15 14 29 29 H 1.08992 * 109.47259 * 181.41170 * 1 2 3 30 30 H 1.08996 * 109.47094 * 301.41485 * 1 2 3 31 31 H 1.09004 * 109.47149 * 61.41293 * 1 2 3 32 32 H 1.08995 * 110.48331 * 24.21256 * 4 2 1 33 33 H 1.08995 * 110.59595 * 261.62470 * 4 2 1 34 34 H 1.09000 * 110.75797 * 203.74505 * 5 4 2 35 35 H 1.09003 * 110.75931 * 80.37229 * 5 4 2 36 36 H 1.08997 * 110.48564 * 279.26535 * 6 5 4 37 37 H 1.08996 * 110.59903 * 156.67413 * 6 5 4 38 38 H 1.09004 * 109.47268 * 56.37934 * 9 7 2 39 39 H 1.08999 * 109.47014 * 296.38010 * 9 7 2 40 40 H 1.00900 * 111.00124 * 56.04522 * 10 9 7 41 41 H 1.08999 * 109.46771 * 59.99772 * 11 10 9 42 42 H 1.08996 * 109.46843 * 300.00031 * 11 10 9 43 43 H 1.08003 * 119.95973 * 0.04737 * 13 12 11 44 44 H 1.08002 * 120.03523 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.47060 * 270.00231 * 17 16 15 46 46 H 1.09004 * 109.47073 * 29.99719 * 17 16 15 47 47 H 1.09000 * 109.47212 * 149.99802 * 17 16 15 48 48 H 1.09001 * 109.47057 * 30.00662 * 18 16 15 49 49 H 1.08999 * 109.47333 * 150.00222 * 18 16 15 50 50 H 0.97003 * 119.99670 * 179.97438 * 22 21 19 51 51 H 1.08002 * 120.03617 * 179.72361 * 27 15 14 52 52 H 1.08004 * 119.96780 * 180.25205 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7556 1.2368 5 6 3.3136 -1.5008 0.7190 6 6 2.8874 -1.9407 -0.7037 7 6 2.0570 -0.7535 -1.2338 8 1 2.6865 -0.0957 -1.8332 9 6 0.8861 -1.2662 -2.0746 10 7 1.4010 -1.9072 -3.2920 11 6 0.3023 -2.4133 -4.1255 12 6 0.8680 -3.0620 -5.3626 13 6 1.1760 -4.4101 -5.3552 14 6 1.6950 -5.0075 -6.4869 15 6 1.9080 -4.2526 -7.6334 16 7 2.4332 -4.8536 -8.7796 17 6 2.7597 -6.2818 -8.7739 18 6 2.6567 -4.0560 -9.9880 19 6 1.4181 -4.0860 -10.8459 20 1 0.5510 -4.6431 -10.5232 21 6 1.3916 -3.4014 -12.0424 22 7 0.3108 -3.4280 -12.7913 23 14 2.8911 -2.4372 -12.6004 24 1 3.7727 -3.3174 -13.4087 25 1 2.4572 -1.2802 -13.4239 26 1 3.6352 -1.9479 -11.4121 27 6 1.6028 -2.8975 -7.6355 28 6 1.0792 -2.3074 -6.5020 29 1 -0.3633 -1.0273 0.0253 30 1 -0.3633 0.5356 0.8770 31 1 -0.3634 0.4917 -0.9024 32 1 1.3143 -1.4661 1.5965 33 1 2.3294 -0.0555 2.0270 34 1 3.5325 -2.3680 1.3420 35 1 4.1710 -0.8292 0.6750 36 1 2.2771 -2.8426 -0.6574 37 1 3.7624 -2.1051 -1.3325 38 1 0.2421 -0.4305 -2.3485 39 1 0.3137 -1.9915 -1.4963 40 1 2.0515 -2.6444 -3.0650 41 1 -0.3460 -1.5859 -4.4136 42 1 -0.2736 -3.1467 -3.5612 43 1 1.0102 -4.9964 -4.4635 44 1 1.9350 -6.0605 -6.4806 45 1 3.7920 -6.4173 -8.4512 46 1 2.0930 -6.8041 -8.0877 47 1 2.6369 -6.6866 -9.7785 48 1 2.8798 -3.0266 -9.7077 49 1 3.4958 -4.4704 -10.5468 50 1 0.2919 -2.9461 -13.6329 51 1 1.7714 -2.3068 -8.5238 52 1 0.8379 -1.2547 -6.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798503180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:18 Heat of formation + Delta-G solvation = 0.052568 kcal Electronic energy + Delta-G solvation = -25928.554419 eV Core-core repulsion = 22505.188736 eV Total energy + Delta-G solvation = -3423.365684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53618 -39.99347 -37.76735 -36.00331 -34.68256 -32.40604 -32.00611 -31.82752 -30.24633 -29.57319 -27.17215 -25.96597 -25.50137 -24.28379 -23.33094 -22.93611 -21.51690 -21.01158 -19.45144 -19.08558 -18.18497 -17.39480 -16.87085 -16.60438 -16.11900 -15.88171 -15.65558 -15.43844 -15.16787 -14.95213 -14.78899 -14.48761 -14.34656 -14.27338 -14.08106 -13.73757 -13.37367 -13.25502 -13.14308 -13.05276 -13.00716 -12.72002 -12.61476 -12.43142 -12.11239 -11.94731 -11.86790 -11.73820 -11.60720 -11.51665 -11.44999 -11.40009 -11.28570 -11.12588 -10.82741 -10.41376 -9.67762 -9.22303 -8.34043 -7.91429 -6.39154 0.70106 0.82341 1.33009 1.35427 1.45919 2.30087 2.54161 2.99645 3.01780 3.48978 3.69957 3.78110 3.92173 4.04692 4.12381 4.21094 4.37721 4.40784 4.44683 4.47194 4.52653 4.59724 4.62639 4.64371 4.70637 4.72909 4.74879 4.76886 4.79054 4.84163 4.91472 4.94219 4.98473 5.05192 5.05756 5.08614 5.13750 5.16744 5.29442 5.29585 5.38473 5.45316 5.45748 5.53693 5.59699 5.61205 5.64153 5.92403 6.08638 6.17196 6.25324 6.57041 6.59468 6.69355 6.86941 7.26207 8.83339 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.002256 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.608032 B =12406.299185 C =12789.022961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.085 4.085 8 H 0.065 0.935 9 C 0.068 3.932 10 N -0.695 5.695 11 C 0.120 3.880 12 C -0.158 4.158 13 C -0.063 4.063 14 C -0.215 4.215 15 C 0.211 3.789 16 N -0.629 5.629 17 C 0.097 3.903 18 C 0.231 3.769 19 C -0.535 4.535 20 H 0.025 0.975 21 C 0.011 3.989 22 N -0.945 5.945 23 Si 0.947 3.053 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.248 1.248 27 C -0.217 4.217 28 C -0.057 4.057 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.342 0.658 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.034 0.966 50 H 0.268 0.732 51 H 0.099 0.901 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 3.106 28.680 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.158 4.158 7 C -0.104 4.104 8 H 0.084 0.916 9 C -0.060 4.060 10 N -0.326 5.326 11 C -0.008 4.008 12 C -0.160 4.160 13 C -0.082 4.082 14 C -0.238 4.238 15 C 0.106 3.894 16 N -0.337 5.337 17 C -0.046 4.046 18 C 0.108 3.892 19 C -0.574 4.574 20 H 0.043 0.957 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.769 3.231 24 H -0.185 1.185 25 H -0.207 1.207 26 H -0.171 1.171 27 C -0.240 4.240 28 C -0.077 4.077 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.160 0.840 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.159 0.841 44 H 0.151 0.849 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.077 0.923 51 H 0.117 0.883 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.997 3.651 27.990 28.666 hybrid contribution -0.176 -0.332 -0.823 0.905 sum 4.821 3.319 27.166 27.790 Atomic orbital electron populations 1.21961 0.94846 1.01912 1.01735 1.21743 0.95996 0.99158 0.94069 0.91166 1.22442 0.97214 0.98976 0.96918 1.22483 0.97810 1.00078 0.95845 1.22417 0.99350 0.97469 0.96542 1.21774 0.96094 0.97020 0.95464 0.91617 1.22222 0.96434 0.98161 0.89224 1.60525 1.17029 1.35804 1.19274 1.20583 0.92165 0.97490 0.90583 1.19551 1.06925 0.93977 0.95590 1.20916 0.95863 0.94115 0.97270 1.20788 1.09935 1.00172 0.92863 1.18209 0.91734 0.92292 0.87116 1.46694 1.67552 1.09229 1.10242 1.21642 1.00393 0.80345 1.02231 1.19336 0.94871 0.91884 0.83079 1.21656 0.99958 1.31296 1.04479 0.95698 1.25882 0.99428 0.97151 0.96261 1.70067 1.30462 1.44204 1.13822 0.85722 0.79265 0.78685 0.79383 1.18509 1.20672 1.17125 1.20803 1.09036 0.94390 0.99757 1.20803 0.95786 0.99297 0.91777 0.92416 0.92395 0.92599 0.91455 0.91238 0.91123 0.91588 0.91858 0.91991 0.91137 0.94595 0.83981 0.91040 0.93839 0.84084 0.84868 0.91987 0.90763 0.92566 0.95235 0.94772 0.92319 0.88263 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.88 71.98 0.57 -1.18 16 2 C -0.09 -1.16 3.50 -10.07 -0.04 -1.19 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -1.32 6.36 31.67 0.20 -1.12 16 5 C -0.12 -1.48 6.91 31.88 0.22 -1.26 16 6 C -0.12 -1.68 5.50 31.67 0.17 -1.50 16 7 C -0.08 -1.29 3.16 -10.07 -0.03 -1.32 16 8 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 9 C 0.07 1.13 3.85 86.30 0.33 1.46 16 10 N -0.69 -14.32 6.49 -517.92 -3.36 -17.68 16 11 C 0.12 2.70 5.81 85.56 0.50 3.20 16 12 C -0.16 -4.55 5.40 -19.84 -0.11 -4.66 16 13 C -0.06 -1.74 9.69 22.25 0.22 -1.52 16 14 C -0.21 -7.00 9.21 22.40 0.21 -6.79 16 15 C 0.21 8.48 6.55 38.21 0.25 8.73 16 16 N -0.63 -26.67 2.99 -726.56 -2.17 -28.84 16 17 C 0.10 3.24 10.19 127.77 1.30 4.54 16 18 C 0.23 11.11 3.99 85.63 0.34 11.45 16 19 C -0.54 -31.10 9.94 25.60 0.25 -30.84 16 20 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 21 C 0.01 0.63 5.47 84.66 0.46 1.09 16 22 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 23 Si 0.95 43.47 27.47 68.60 1.88 45.35 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 27 C -0.22 -8.98 9.21 22.40 0.21 -8.78 16 28 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 29 H 0.06 0.69 6.81 -2.39 -0.02 0.67 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.70 6.65 -2.38 -0.02 0.69 16 32 H 0.07 0.73 7.84 -2.39 -0.02 0.71 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.87 7.78 -2.39 -0.02 0.85 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.22 6.51 -2.38 -0.02 1.21 16 39 H 0.04 0.56 6.86 -2.39 -0.02 0.54 16 40 H 0.34 6.77 7.90 -89.69 -0.71 6.07 16 41 H 0.07 1.63 8.08 -2.39 -0.02 1.62 16 42 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 43 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 44 H 0.13 3.74 6.14 -2.91 -0.02 3.72 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 46 H 0.07 2.19 6.20 -2.38 -0.01 2.17 16 47 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 48 H 0.03 1.44 5.24 -2.39 -0.01 1.43 16 49 H 0.03 1.56 7.50 -2.39 -0.02 1.54 16 50 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.10 4.56 6.14 -2.91 -0.02 4.55 16 52 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -67.04 397.39 2.04 -65.00 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.12 Total: 26.65 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 5.27 Total: -31.45 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -5.24 Total: -105.55 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -67.04 2.04 -65.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.052 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds