Wall clock time and date at job start Tue Mar 31 2020 11:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.01231 * 2 1 4 4 C 1.54259 * 110.03248 * 238.55594 * 2 1 3 5 5 C 1.54887 * 104.19769 * 264.32570 * 4 2 1 6 6 C 1.54898 * 102.74586 * 322.05592 * 5 4 2 7 7 C 1.53873 * 110.03319 * 121.38792 * 2 1 3 8 8 H 1.08999 * 110.03411 * 359.95354 * 7 2 1 9 9 C 1.52999 * 110.03208 * 238.57148 * 7 2 1 10 10 N 1.46898 * 109.47093 * 175.00236 * 9 7 2 11 11 C 1.46899 * 111.00124 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.38288 * 119.92407 * 90.00087 * 12 11 10 14 14 C 1.38111 * 120.07382 * 179.69843 * 13 12 11 15 15 C 1.38906 * 119.92343 * 0.28047 * 14 13 12 16 16 N 1.39676 * 120.07135 * 180.02562 * 15 14 13 17 17 C 1.46500 * 120.00296 * 359.97438 * 16 15 14 18 18 C 1.46500 * 119.99636 * 179.97438 * 16 15 14 19 19 C 1.50702 * 109.47373 * 90.00200 * 18 16 15 20 20 H 1.07994 * 119.99698 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00179 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00221 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47206 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46886 * 120.00086 * 23 21 19 26 26 H 1.48496 * 109.47179 * 239.99354 * 23 21 19 27 27 C 1.38908 * 119.85606 * 359.97438 * 15 14 13 28 28 C 1.38112 * 119.92096 * 0.02562 * 27 15 14 29 29 H 1.09008 * 109.46999 * 298.61091 * 1 2 3 30 30 H 1.08994 * 109.47193 * 58.60740 * 1 2 3 31 31 H 1.09000 * 109.46802 * 178.61288 * 1 2 3 32 32 H 1.08999 * 110.48655 * 23.00366 * 4 2 1 33 33 H 1.09001 * 110.48744 * 145.50879 * 4 2 1 34 34 H 1.09003 * 110.75560 * 80.37059 * 5 4 2 35 35 H 1.09006 * 110.75488 * 203.74848 * 5 4 2 36 36 H 1.09000 * 110.48300 * 279.26205 * 6 5 4 37 37 H 1.09000 * 110.48167 * 156.62275 * 6 5 4 38 38 H 1.08996 * 109.47435 * 55.00029 * 9 7 2 39 39 H 1.09000 * 109.47274 * 294.99770 * 9 7 2 40 40 H 1.00898 * 111.00093 * 303.95235 * 10 9 7 41 41 H 1.09001 * 109.47298 * 60.00095 * 11 10 9 42 42 H 1.09003 * 109.47252 * 299.99696 * 11 10 9 43 43 H 1.08002 * 119.96530 * 359.97438 * 13 12 11 44 44 H 1.07999 * 120.03725 * 180.25498 * 14 13 12 45 45 H 1.08999 * 109.46842 * 90.00314 * 17 16 15 46 46 H 1.08993 * 109.47033 * 209.99976 * 17 16 15 47 47 H 1.09002 * 109.46727 * 330.00653 * 17 16 15 48 48 H 1.09003 * 109.46815 * 209.99913 * 18 16 15 49 49 H 1.08993 * 109.47537 * 329.99648 * 18 16 15 50 50 H 0.97001 * 120.00212 * 180.02562 * 22 21 19 51 51 H 1.07998 * 120.04221 * 179.97438 * 27 15 14 52 52 H 1.08002 * 119.96339 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7560 -1.2364 5 6 2.3281 -2.1905 -0.7181 6 6 2.8875 -1.9402 0.7045 7 6 2.0571 -0.7529 1.2341 8 1 1.2230 -1.1176 1.8334 9 6 2.9408 0.1714 2.0740 10 7 3.3395 -0.5199 3.3074 11 6 4.1914 0.3391 4.1406 12 6 4.5789 -0.4022 5.3941 13 6 5.7292 -1.1694 5.4143 14 6 6.0906 -1.8450 6.5634 15 6 5.2939 -1.7579 7.6979 16 7 5.6566 -2.4394 8.8619 17 6 6.8782 -3.2477 8.8870 18 6 4.8155 -2.3459 10.0577 19 6 3.7864 -3.4466 10.0354 20 1 3.7612 -4.1456 9.2125 21 6 2.8764 -3.5607 11.0649 22 7 2.9068 -2.7092 12.0667 23 14 1.6004 -4.9247 11.0368 24 1 1.7767 -5.7422 9.8097 25 1 1.7700 -5.7858 12.2346 26 1 0.2398 -4.3299 11.0435 27 6 4.1362 -0.9906 7.6727 28 6 3.7807 -0.3176 6.5203 29 1 -0.3633 0.4921 0.9022 30 1 -0.3633 0.5353 -0.8772 31 1 -0.3633 -1.0274 -0.0249 32 1 1.3061 -0.7705 -2.0250 33 1 2.9798 -0.2993 -1.5979 34 1 1.4031 -2.7654 -0.6738 35 1 3.0677 -2.6937 -1.3410 36 1 3.9441 -1.6763 0.6579 37 1 2.7402 -2.8190 1.3323 38 1 2.3851 1.0743 2.3270 39 1 3.8305 0.4400 1.5044 40 1 2.5313 -0.8363 3.8219 41 1 3.6447 1.2433 4.4079 42 1 5.0897 0.6084 3.5850 43 1 6.3482 -1.2367 4.5318 44 1 6.9913 -2.4406 6.5797 45 1 7.7168 -2.6288 9.2060 46 1 6.7517 -4.0757 9.5844 47 1 7.0749 -3.6398 7.8891 48 1 5.4367 -2.4473 10.9476 49 1 4.3129 -1.3789 10.0737 50 1 2.2668 -2.7896 12.7912 51 1 3.5143 -0.9211 8.5530 52 1 2.8810 0.2795 6.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798503181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:21 Heat of formation + Delta-G solvation = 5.751644 kcal Electronic energy + Delta-G solvation = -25866.194279 eV Core-core repulsion = 22443.075726 eV Total energy + Delta-G solvation = -3423.118553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.27730 -38.88839 -36.41921 -34.86528 -32.71243 -31.21406 -30.88801 -30.41639 -28.69155 -27.78200 -26.21086 -25.42007 -24.02254 -22.73770 -22.09866 -21.43810 -20.63112 -19.72715 -19.35362 -16.71774 -16.49219 -16.00973 -15.70920 -15.27475 -14.80906 -14.75981 -14.39235 -14.27441 -14.04085 -13.68363 -13.52718 -13.29380 -12.96482 -12.86662 -12.83653 -12.68713 -12.20946 -11.94595 -11.89294 -11.80525 -11.38697 -11.25147 -11.18195 -11.04719 -10.92297 -10.85597 -10.79905 -10.69356 -10.68520 -10.62564 -10.45253 -10.26475 -9.86785 -9.73560 -8.83242 -8.51375 -8.32606 -8.23006 -6.45613 -6.01539 -4.17656 2.13367 2.24828 3.24966 3.33149 3.38532 4.11058 4.18049 4.40548 4.41257 4.47219 4.53968 4.77203 5.01810 5.13147 5.16608 5.21177 5.21515 5.30427 5.33031 5.40027 5.43515 5.46777 5.59659 5.62759 5.65643 5.68252 5.71761 5.76523 5.81982 5.84677 5.87546 5.93265 6.00251 6.03190 6.09380 6.12878 6.22852 6.29965 6.34977 6.41551 6.45373 6.66893 6.94043 7.02887 7.12987 7.22608 7.27064 7.34786 7.48753 7.62603 7.81136 8.15624 8.27681 8.50116 8.92036 9.49280 10.95231 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.002507 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.587886 B =11166.485198 C =12168.215595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.086 4.086 8 H 0.071 0.929 9 C 0.066 3.934 10 N -0.684 5.684 11 C 0.116 3.884 12 C -0.173 4.173 13 C -0.051 4.051 14 C -0.223 4.223 15 C 0.241 3.759 16 N -0.616 5.616 17 C 0.098 3.902 18 C 0.248 3.752 19 C -0.529 4.529 20 H 0.060 0.940 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.188 4.188 28 C -0.067 4.067 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.342 0.658 41 H 0.027 0.973 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.263 0.737 51 H 0.131 0.869 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 5.851 -22.345 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.157 4.157 5 C -0.166 4.166 6 C -0.143 4.143 7 C -0.105 4.105 8 H 0.090 0.910 9 C -0.064 4.064 10 N -0.315 5.315 11 C -0.012 4.012 12 C -0.176 4.176 13 C -0.070 4.070 14 C -0.246 4.246 15 C 0.134 3.866 16 N -0.322 5.322 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.568 4.568 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.210 4.210 28 C -0.087 4.087 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.160 0.840 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.148 0.852 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.090 5.463 -22.239 22.926 hybrid contribution -1.461 -0.190 0.573 1.581 sum -0.372 5.273 -21.666 22.301 Atomic orbital electron populations 1.21878 0.95100 1.01743 1.01387 1.21767 0.95589 0.99281 0.94592 0.91260 1.22411 1.00540 0.95822 0.96940 1.22544 1.00630 0.96446 0.97002 1.22272 0.99441 0.97703 0.94866 1.21858 0.97675 0.95590 0.95392 0.91039 1.22092 0.98058 0.94491 0.91733 1.60540 1.23759 1.40317 1.06891 1.20630 0.96545 0.92599 0.91418 1.19179 0.98286 1.05371 0.94720 1.20484 0.95545 0.94803 0.96200 1.20572 1.02671 1.07837 0.93488 1.17957 0.92375 0.89816 0.86441 1.47095 1.24694 1.49009 1.11360 1.21470 0.86710 0.95020 1.01372 1.19286 0.89275 0.97545 0.81028 1.21620 1.14741 1.13854 1.06619 0.92197 1.24968 0.97587 0.96339 0.95247 1.69940 1.36937 1.36407 1.10172 0.86470 0.81282 0.81909 0.78002 1.19686 1.20953 1.20864 1.20839 0.98396 1.02170 0.99612 1.20652 0.97760 0.97860 0.92422 0.92789 0.92946 0.92607 0.91969 0.91838 0.91841 0.91918 0.91348 0.91543 0.95824 0.91285 0.84014 0.95480 0.91293 0.87356 0.86933 0.94642 0.91478 0.92657 0.95218 0.94654 0.92717 0.85160 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.83 37.16 0.33 -0.73 16 2 C -0.09 -0.73 3.16 -89.51 -0.28 -1.01 16 3 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 4 C -0.12 -0.88 6.37 -25.08 -0.16 -1.04 16 5 C -0.13 -1.03 6.91 -24.73 -0.17 -1.20 16 6 C -0.11 -0.99 6.19 -25.07 -0.16 -1.14 16 7 C -0.09 -0.78 2.74 -89.50 -0.25 -1.03 16 8 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16 9 C 0.07 0.64 4.74 -3.83 -0.02 0.63 16 10 N -0.68 -8.12 6.31 -115.06 -0.73 -8.85 16 11 C 0.12 1.47 5.81 -4.98 -0.03 1.44 16 12 C -0.17 -2.68 5.39 -104.59 -0.56 -3.25 16 13 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 14 C -0.22 -3.94 9.21 -39.38 -0.36 -4.30 16 15 C 0.24 4.93 6.55 -83.79 -0.55 4.38 16 16 N -0.62 -13.31 2.99 -181.01 -0.54 -13.85 16 17 C 0.10 1.75 10.19 59.85 0.61 2.36 16 18 C 0.25 6.26 4.91 -5.19 -0.03 6.23 16 19 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 20 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 23 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.19 -3.81 9.21 -39.38 -0.36 -4.18 16 28 C -0.07 -1.16 9.69 -39.61 -0.38 -1.54 16 29 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 7.84 -51.93 -0.41 0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.69 7.76 -51.93 -0.40 0.28 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 40 H 0.34 4.22 8.72 -39.29 -0.34 3.88 16 41 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 42 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.81 6.14 -52.49 -0.32 1.48 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 49 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16 52 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 408.06 15.07 6.15 6.15 Total: -1.00 -28.29 408.06 -12.10 -40.39 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -9.53 Total: 3.60 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -3.17 Total: -18.81 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.53 Total: -47.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -28.29 -12.10 -40.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.142 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds