Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.01231 * 2 1 4 4 C 1.54259 * 110.03248 * 238.55594 * 2 1 3 5 5 C 1.54887 * 104.19769 * 264.32570 * 4 2 1 6 6 C 1.54898 * 102.74586 * 322.05592 * 5 4 2 7 7 C 1.53873 * 110.03319 * 121.38792 * 2 1 3 8 8 H 1.08999 * 110.03411 * 359.95354 * 7 2 1 9 9 C 1.52999 * 110.03208 * 238.57148 * 7 2 1 10 10 N 1.46898 * 109.47093 * 175.00236 * 9 7 2 11 11 C 1.46899 * 111.00124 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.38288 * 119.92407 * 90.00087 * 12 11 10 14 14 C 1.38111 * 120.07382 * 179.69843 * 13 12 11 15 15 C 1.38906 * 119.92343 * 0.28047 * 14 13 12 16 16 N 1.39676 * 120.07135 * 180.02562 * 15 14 13 17 17 C 1.46500 * 120.00296 * 359.97438 * 16 15 14 18 18 C 1.46500 * 119.99636 * 179.97438 * 16 15 14 19 19 C 1.50702 * 109.47373 * 90.00200 * 18 16 15 20 20 H 1.07994 * 119.99698 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00179 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00221 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47206 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46886 * 120.00086 * 23 21 19 26 26 H 1.48496 * 109.47179 * 239.99354 * 23 21 19 27 27 C 1.38908 * 119.85606 * 359.97438 * 15 14 13 28 28 C 1.38112 * 119.92096 * 0.02562 * 27 15 14 29 29 H 1.09008 * 109.46999 * 298.61091 * 1 2 3 30 30 H 1.08994 * 109.47193 * 58.60740 * 1 2 3 31 31 H 1.09000 * 109.46802 * 178.61288 * 1 2 3 32 32 H 1.08999 * 110.48655 * 23.00366 * 4 2 1 33 33 H 1.09001 * 110.48744 * 145.50879 * 4 2 1 34 34 H 1.09003 * 110.75560 * 80.37059 * 5 4 2 35 35 H 1.09006 * 110.75488 * 203.74848 * 5 4 2 36 36 H 1.09000 * 110.48300 * 279.26205 * 6 5 4 37 37 H 1.09000 * 110.48167 * 156.62275 * 6 5 4 38 38 H 1.08996 * 109.47435 * 55.00029 * 9 7 2 39 39 H 1.09000 * 109.47274 * 294.99770 * 9 7 2 40 40 H 1.00898 * 111.00093 * 303.95235 * 10 9 7 41 41 H 1.09001 * 109.47298 * 60.00095 * 11 10 9 42 42 H 1.09003 * 109.47252 * 299.99696 * 11 10 9 43 43 H 1.08002 * 119.96530 * 359.97438 * 13 12 11 44 44 H 1.07999 * 120.03725 * 180.25498 * 14 13 12 45 45 H 1.08999 * 109.46842 * 90.00314 * 17 16 15 46 46 H 1.08993 * 109.47033 * 209.99976 * 17 16 15 47 47 H 1.09002 * 109.46727 * 330.00653 * 17 16 15 48 48 H 1.09003 * 109.46815 * 209.99913 * 18 16 15 49 49 H 1.08993 * 109.47537 * 329.99648 * 18 16 15 50 50 H 0.97001 * 120.00212 * 180.02562 * 22 21 19 51 51 H 1.07998 * 120.04221 * 179.97438 * 27 15 14 52 52 H 1.08002 * 119.96339 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7560 -1.2364 5 6 2.3281 -2.1905 -0.7181 6 6 2.8875 -1.9402 0.7045 7 6 2.0571 -0.7529 1.2341 8 1 1.2230 -1.1176 1.8334 9 6 2.9408 0.1714 2.0740 10 7 3.3395 -0.5199 3.3074 11 6 4.1914 0.3391 4.1406 12 6 4.5789 -0.4022 5.3941 13 6 5.7292 -1.1694 5.4143 14 6 6.0906 -1.8450 6.5634 15 6 5.2939 -1.7579 7.6979 16 7 5.6566 -2.4394 8.8619 17 6 6.8782 -3.2477 8.8870 18 6 4.8155 -2.3459 10.0577 19 6 3.7864 -3.4466 10.0354 20 1 3.7612 -4.1456 9.2125 21 6 2.8764 -3.5607 11.0649 22 7 2.9068 -2.7092 12.0667 23 14 1.6004 -4.9247 11.0368 24 1 1.7767 -5.7422 9.8097 25 1 1.7700 -5.7858 12.2346 26 1 0.2398 -4.3299 11.0435 27 6 4.1362 -0.9906 7.6727 28 6 3.7807 -0.3176 6.5203 29 1 -0.3633 0.4921 0.9022 30 1 -0.3633 0.5353 -0.8772 31 1 -0.3633 -1.0274 -0.0249 32 1 1.3061 -0.7705 -2.0250 33 1 2.9798 -0.2993 -1.5979 34 1 1.4031 -2.7654 -0.6738 35 1 3.0677 -2.6937 -1.3410 36 1 3.9441 -1.6763 0.6579 37 1 2.7402 -2.8190 1.3323 38 1 2.3851 1.0743 2.3270 39 1 3.8305 0.4400 1.5044 40 1 2.5313 -0.8363 3.8219 41 1 3.6447 1.2433 4.4079 42 1 5.0897 0.6084 3.5850 43 1 6.3482 -1.2367 4.5318 44 1 6.9913 -2.4406 6.5797 45 1 7.7168 -2.6288 9.2060 46 1 6.7517 -4.0757 9.5844 47 1 7.0749 -3.6398 7.8891 48 1 5.4367 -2.4473 10.9476 49 1 4.3129 -1.3789 10.0737 50 1 2.2668 -2.7896 12.7912 51 1 3.5143 -0.9211 8.5530 52 1 2.8810 0.2795 6.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798503181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = -7.319953 kcal Electronic energy + Delta-G solvation = -25866.761106 eV Core-core repulsion = 22443.075726 eV Total energy + Delta-G solvation = -3423.685380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47770 -39.81116 -37.75078 -36.07528 -34.72028 -32.01170 -31.87827 -31.83200 -29.88875 -29.47299 -27.24057 -26.52080 -25.52158 -23.85937 -23.31891 -22.90847 -21.32579 -21.04294 -20.14565 -18.64287 -18.13435 -17.10778 -16.71750 -16.46153 -16.24463 -15.82382 -15.56630 -15.39190 -15.23438 -15.14846 -14.61660 -14.34914 -14.26732 -14.10742 -14.05592 -13.54125 -13.34590 -13.20968 -13.14611 -13.07010 -12.94669 -12.65487 -12.64434 -12.55311 -12.22116 -12.07835 -11.80160 -11.73677 -11.54785 -11.46519 -11.43805 -11.39771 -11.26850 -11.26131 -10.65315 -10.40289 -9.65945 -9.23901 -8.36715 -7.79857 -6.38054 0.71683 0.85167 1.35396 1.37074 1.49585 2.33893 2.63744 3.02605 3.05494 3.47488 3.76368 3.81472 3.91904 4.06560 4.14321 4.26127 4.36750 4.42833 4.44993 4.51985 4.55660 4.59669 4.65365 4.70949 4.71943 4.72546 4.78464 4.81635 4.87520 4.91578 4.94309 5.00413 5.02202 5.06428 5.13664 5.15875 5.20435 5.26104 5.30411 5.34004 5.35920 5.46120 5.56543 5.59439 5.64942 5.68037 5.70266 5.93636 6.06813 6.16706 6.25523 6.49817 6.50476 6.82729 6.94064 7.33913 8.82739 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.002507 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.587886 B =11166.485198 C =12168.215595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.127 4.127 6 C -0.105 4.105 7 C -0.084 4.084 8 H 0.062 0.938 9 C 0.070 3.930 10 N -0.690 5.690 11 C 0.121 3.879 12 C -0.158 4.158 13 C -0.049 4.049 14 C -0.218 4.218 15 C 0.211 3.789 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.266 3.734 19 C -0.539 4.539 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.277 1.277 27 C -0.216 4.216 28 C -0.068 4.068 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.338 0.662 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.095 0.905 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 5.906 -25.293 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.165 4.165 6 C -0.142 4.142 7 C -0.103 4.103 8 H 0.081 0.919 9 C -0.059 4.059 10 N -0.321 5.321 11 C -0.007 4.007 12 C -0.161 4.161 13 C -0.068 4.068 14 C -0.241 4.241 15 C 0.107 3.893 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.144 3.856 19 C -0.578 4.578 20 H 0.066 0.934 21 C -0.187 4.187 22 N -0.567 5.567 23 Si 0.787 3.213 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.202 1.202 27 C -0.239 4.239 28 C -0.088 4.088 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.155 0.845 41 H 0.053 0.947 42 H 0.102 0.898 43 H 0.157 0.843 44 H 0.149 0.851 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.113 0.887 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.234 5.529 -25.225 25.853 hybrid contribution -1.488 -0.132 1.376 2.031 sum -0.254 5.396 -23.850 24.454 Atomic orbital electron populations 1.21866 0.94782 1.01649 1.01704 1.21752 0.95836 0.99328 0.94081 0.90828 1.22405 1.01008 0.95121 0.96888 1.22532 1.00651 0.97066 0.96204 1.22234 0.99236 0.97219 0.95559 1.21829 0.97190 0.95499 0.95744 0.91941 1.22097 0.98413 0.94548 0.90809 1.60530 1.23733 1.40565 1.07291 1.20607 0.97493 0.92378 0.90220 1.19530 0.97337 1.04074 0.95156 1.20869 0.95733 0.93673 0.96506 1.20809 1.02676 1.07766 0.92801 1.18232 0.93319 0.90744 0.87035 1.46964 1.25589 1.50734 1.10752 1.21598 0.85742 0.94634 1.02520 1.18775 0.88931 0.95696 0.82149 1.21789 1.15621 1.14097 1.06274 0.93381 1.25785 0.99510 0.98613 0.94830 1.70043 1.37874 1.37951 1.10804 0.85448 0.78689 0.79031 0.78161 1.19535 1.19928 1.20244 1.20748 0.98918 1.04436 0.99752 1.20825 0.98588 0.97414 0.91925 0.93110 0.91984 0.92952 0.91137 0.91380 0.91935 0.91385 0.91856 0.93046 0.95373 0.90773 0.84480 0.94705 0.89785 0.84297 0.85052 0.92908 0.92529 0.90395 0.97277 0.97121 0.92387 0.88716 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.83 71.98 0.64 -1.19 16 2 C -0.09 -1.22 3.16 -10.07 -0.03 -1.25 16 3 H 0.07 0.95 7.67 -2.38 -0.02 0.93 16 4 C -0.12 -1.45 6.37 31.67 0.20 -1.25 16 5 C -0.13 -1.81 6.91 31.89 0.22 -1.59 16 6 C -0.10 -1.81 6.19 31.67 0.20 -1.62 16 7 C -0.08 -1.37 2.74 -10.07 -0.03 -1.40 16 8 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 9 C 0.07 1.21 4.74 86.30 0.41 1.62 16 10 N -0.69 -14.81 6.31 -517.94 -3.27 -18.07 16 11 C 0.12 2.70 5.81 85.56 0.50 3.20 16 12 C -0.16 -4.59 5.39 -19.84 -0.11 -4.70 16 13 C -0.05 -1.42 9.69 22.25 0.22 -1.21 16 14 C -0.22 -7.36 9.21 22.40 0.21 -7.15 16 15 C 0.21 8.79 6.55 38.21 0.25 9.04 16 16 N -0.63 -28.20 2.99 -726.58 -2.17 -30.37 16 17 C 0.10 3.47 10.19 127.77 1.30 4.77 16 18 C 0.27 14.18 4.91 85.63 0.42 14.60 16 19 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 20 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.01 0.66 5.46 84.65 0.46 1.13 16 22 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 23 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 C -0.22 -9.13 9.21 22.40 0.21 -8.92 16 28 C -0.07 -2.32 9.69 22.25 0.22 -2.11 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.78 7.84 -2.39 -0.02 0.76 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 1.15 7.76 -2.39 -0.02 1.14 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 1.23 8.00 -2.39 -0.02 1.21 16 40 H 0.34 7.78 8.72 -89.70 -0.78 7.00 16 41 H 0.03 0.74 8.08 -2.39 -0.02 0.72 16 42 H 0.08 1.67 8.08 -2.39 -0.02 1.66 16 43 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 44 H 0.13 3.87 6.14 -2.91 -0.02 3.86 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 47 H 0.08 2.36 6.20 -2.39 -0.01 2.34 16 48 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 49 H 0.01 0.62 6.20 -2.39 -0.01 0.61 16 50 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 51 H 0.09 4.62 6.14 -2.91 -0.02 4.60 16 52 H 0.12 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -62.46 408.06 2.47 -59.99 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.09 Total: 24.87 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 5.51 Total: -28.44 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.16 Total: -102.95 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.46 2.47 -59.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798503181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.673 kcal (2) G-P(sol) polarization free energy of solvation -62.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds