Wall clock time and date at job start Tue Mar 31 2020 11:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 H 1.08995 * 110.01018 * 56.50662 * 3 2 1 5 5 C 1.54321 * 109.88614 * 295.39267 * 3 2 1 6 6 C 1.55135 * 103.02148 * 218.31271 * 5 3 2 7 7 C 1.54905 * 101.65430 * 35.65447 * 6 5 3 8 8 H 1.09004 * 110.37786 * 81.76021 * 7 6 5 9 9 C 1.53000 * 110.46834 * 204.05590 * 7 6 5 10 10 N 1.47446 * 109.88874 * 177.62877 * 3 2 1 11 11 C 1.46902 * 110.99946 * 356.14542 * 10 3 2 12 12 C 1.50700 * 109.46811 * 185.41312 * 11 10 3 13 13 C 1.38284 * 119.92829 * 89.99861 * 12 11 10 14 14 C 1.38105 * 120.07501 * 180.02562 * 13 12 11 15 15 C 1.38909 * 119.92460 * 0.02562 * 14 13 12 16 16 N 1.39675 * 120.07725 * 179.97438 * 15 14 13 17 17 C 1.46499 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.46501 * 120.00383 * 180.02562 * 16 15 14 19 19 C 1.50707 * 109.46581 * 269.99903 * 18 16 15 20 20 H 1.07993 * 120.00351 * 359.71866 * 19 18 16 21 21 C 1.37878 * 119.99481 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99786 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46886 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47040 * 119.99944 * 23 21 19 26 26 H 1.48498 * 109.47221 * 239.99995 * 23 21 19 27 27 C 1.38912 * 119.85244 * 0.24947 * 15 14 13 28 28 C 1.38111 * 119.92211 * 359.49537 * 27 15 14 29 29 H 1.09003 * 109.47009 * 305.11918 * 1 2 3 30 30 H 1.08994 * 109.47390 * 65.12395 * 1 2 3 31 31 H 1.08997 * 109.47348 * 185.12356 * 1 2 3 32 32 H 1.09002 * 109.47217 * 239.99330 * 2 1 3 33 33 H 1.09004 * 109.47238 * 119.99856 * 2 1 3 34 34 H 1.09001 * 110.70444 * 99.92676 * 5 3 2 35 35 H 1.09011 * 110.85489 * 336.76674 * 5 3 2 36 36 H 1.08996 * 110.99415 * 277.56385 * 6 5 3 37 37 H 1.09004 * 110.99145 * 153.74703 * 6 5 3 38 38 H 1.09006 * 109.47012 * 175.42676 * 9 7 6 39 39 H 1.09001 * 109.46910 * 295.42372 * 9 7 6 40 40 H 1.08999 * 109.47282 * 55.42644 * 9 7 6 41 41 H 1.08993 * 109.47606 * 65.40567 * 11 10 3 42 42 H 1.09008 * 109.46800 * 305.40399 * 11 10 3 43 43 H 1.07994 * 119.96158 * 359.97438 * 13 12 11 44 44 H 1.07994 * 120.04087 * 179.97438 * 14 13 12 45 45 H 1.08998 * 109.47291 * 270.00424 * 17 16 15 46 46 H 1.09003 * 109.47046 * 30.00368 * 17 16 15 47 47 H 1.08996 * 109.47330 * 150.00163 * 17 16 15 48 48 H 1.08994 * 109.47444 * 149.99665 * 18 16 15 49 49 H 1.09002 * 109.47247 * 29.98975 * 18 16 15 50 50 H 0.97005 * 119.99643 * 180.02562 * 22 21 19 51 51 H 1.08007 * 120.04338 * 179.72879 * 27 15 14 52 52 H 1.08003 * 119.96218 * 180.25086 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6315 1.9825 0.8541 5 6 1.6283 2.1448 -1.3110 6 6 2.8680 3.0155 -1.6453 7 6 4.0272 2.1069 -1.1653 8 1 4.2633 1.3604 -1.9238 9 6 5.2652 2.9454 -0.8411 10 7 3.5133 1.4535 0.0574 11 6 4.0453 0.0906 0.1892 12 6 5.5392 0.1506 0.3780 13 6 6.0709 0.2335 1.6519 14 6 7.4395 0.2892 1.8284 15 6 8.2822 0.2624 0.7244 16 7 9.6668 0.3191 0.8992 17 6 10.2318 0.4075 2.2479 18 6 10.5541 0.2912 -0.2662 19 6 10.9073 -1.1366 -0.5945 20 1 10.5143 -1.9423 0.0077 21 6 11.7366 -1.4139 -1.6605 22 7 12.2188 -0.4325 -2.3912 23 14 12.1751 -3.1837 -2.0670 24 1 11.5091 -4.0932 -1.1003 25 1 11.7183 -3.5032 -3.4435 26 1 13.6468 -3.3615 -1.9802 27 6 7.7446 0.1848 -0.5541 28 6 6.3752 0.1241 -0.7232 29 1 -0.3633 0.5912 0.8406 30 1 -0.3634 0.4323 -0.9323 31 1 -0.3634 -1.0235 0.0918 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.7494 2.7700 -1.1537 35 1 1.4449 1.4160 -2.1006 36 1 2.8494 3.9518 -1.0878 37 1 2.9364 3.2023 -2.7171 38 1 6.0423 2.3016 -0.4289 39 1 5.6314 3.4197 -1.7516 40 1 5.0039 3.7121 -0.1117 41 1 3.8154 -0.4780 -0.7118 42 1 3.5893 -0.3955 1.0518 43 1 5.4151 0.2556 2.5096 44 1 7.8541 0.3544 2.8234 45 1 10.3365 1.4551 2.5301 46 1 9.5691 -0.0942 2.9531 47 1 11.2102 -0.0727 2.2643 48 1 11.4638 0.8487 -0.0437 49 1 10.0488 0.7455 -1.1185 50 1 12.8020 -0.6277 -3.1414 51 1 8.3969 0.1681 -1.4149 52 1 5.9568 0.0597 -1.7168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809768538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:12 Heat of formation + Delta-G solvation = 31.797194 kcal Electronic energy + Delta-G solvation = -27240.513565 eV Core-core repulsion = 23818.524431 eV Total energy + Delta-G solvation = -3421.989134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12715 -38.65559 -35.79214 -34.01506 -32.93278 -32.27490 -30.52048 -29.86254 -29.15136 -27.77165 -25.99428 -25.13799 -24.11256 -23.13440 -22.18349 -21.56762 -20.53504 -19.76264 -18.94487 -16.62153 -16.45089 -15.98751 -15.96518 -15.29505 -15.00360 -14.55791 -14.19322 -13.92386 -13.73114 -13.61264 -13.51607 -13.00827 -12.85079 -12.76148 -12.55404 -12.49192 -12.35244 -12.11275 -11.79899 -11.64247 -11.38511 -11.32924 -11.27082 -11.23970 -11.20805 -10.94334 -10.73175 -10.67638 -10.60553 -10.45789 -10.37787 -10.21273 -9.84811 -9.68676 -8.74967 -8.51061 -8.19461 -8.14943 -6.43517 -6.00608 -4.17411 2.14842 2.27332 3.24707 3.32872 3.37922 3.99314 4.17708 4.41315 4.47441 4.60120 4.64863 4.75911 4.99170 5.07006 5.11041 5.21403 5.28182 5.35302 5.37524 5.42839 5.49846 5.60069 5.64098 5.66716 5.70074 5.72934 5.83030 5.85602 5.85787 5.88312 6.00370 6.02696 6.05142 6.08450 6.10797 6.26792 6.30967 6.31876 6.42467 6.47139 6.66126 6.68404 6.96080 7.04101 7.18027 7.20869 7.26443 7.31216 7.40151 7.63681 7.81319 8.16148 8.28942 8.51748 8.92286 9.49473 10.95402 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.002993 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.805537 B = 9353.741955 C = 9562.483695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.073 3.927 4 H 0.082 0.918 5 C -0.137 4.137 6 C -0.128 4.128 7 C 0.076 3.924 8 H 0.052 0.948 9 C -0.144 4.144 10 N -0.516 5.516 11 C 0.103 3.897 12 C -0.165 4.165 13 C -0.053 4.053 14 C -0.223 4.223 15 C 0.242 3.758 16 N -0.616 5.616 17 C 0.099 3.901 18 C 0.249 3.751 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.189 4.189 28 C -0.063 4.063 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.263 0.737 51 H 0.130 0.870 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.056 4.648 4.571 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.035 4.035 4 H 0.100 0.900 5 C -0.175 4.175 6 C -0.166 4.166 7 C -0.032 4.032 8 H 0.070 0.930 9 C -0.201 4.201 10 N -0.240 5.240 11 C -0.024 4.024 12 C -0.168 4.168 13 C -0.072 4.072 14 C -0.246 4.246 15 C 0.135 3.865 16 N -0.322 5.322 17 C -0.045 4.045 18 C 0.129 3.871 19 C -0.569 4.569 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.211 4.211 28 C -0.082 4.082 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.148 0.852 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.504 4.973 4.884 20.712 hybrid contribution 0.179 -1.490 -1.042 1.827 sum -19.325 3.483 3.842 20.009 Atomic orbital electron populations 1.21742 0.95704 1.01497 1.01743 1.22173 0.96156 0.97273 1.02559 1.22475 0.88346 0.95071 0.97619 0.90032 1.22858 0.98288 0.98921 0.97427 1.22786 0.94277 0.98695 1.00856 1.22503 0.94977 0.95420 0.90327 0.93020 1.21922 0.97451 0.99975 1.00774 1.63779 1.04585 1.18068 1.37531 1.21076 0.92136 0.89001 1.00154 1.19147 0.93604 1.10692 0.93343 1.20456 0.93805 0.97107 0.95866 1.20551 0.93279 1.13653 0.97142 1.17928 0.84012 0.91225 0.93374 1.47079 1.02371 1.75888 1.06864 1.21462 0.99112 0.99517 0.84448 1.19276 0.88378 0.96877 0.82542 1.21625 1.29003 0.92860 1.13371 0.92227 1.24965 0.95755 0.97440 0.95952 1.69943 1.33381 1.31214 1.18879 0.86480 0.78094 0.84795 0.78340 1.19724 1.20859 1.20960 1.20824 0.94852 1.08968 0.96483 1.20614 0.92852 0.97604 0.97157 0.92689 0.92816 0.92883 0.91821 0.90963 0.91247 0.91604 0.90807 0.91245 0.90301 0.93242 0.92835 0.94665 0.90526 0.87452 0.87015 0.94658 0.92695 0.91537 0.95268 0.94638 0.92723 0.85242 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.65 37.16 0.36 -0.74 16 2 C -0.14 -1.28 4.08 -26.73 -0.11 -1.39 16 3 C 0.07 0.73 3.49 -66.72 -0.23 0.49 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.14 -1.22 5.57 -24.91 -0.14 -1.36 16 6 C -0.13 -1.28 6.50 -24.60 -0.16 -1.44 16 7 C 0.08 0.92 2.41 -66.19 -0.16 0.76 16 8 H 0.05 0.67 6.69 -51.93 -0.35 0.32 16 9 C -0.14 -1.95 9.10 37.16 0.34 -1.61 16 10 N -0.52 -6.28 4.87 -216.95 -1.06 -7.34 16 11 C 0.10 1.32 3.83 -4.97 -0.02 1.30 16 12 C -0.16 -2.55 3.93 -104.59 -0.41 -2.96 16 13 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 14 C -0.22 -3.91 9.21 -39.38 -0.36 -4.27 16 15 C 0.24 4.88 6.55 -83.79 -0.55 4.33 16 16 N -0.62 -13.24 2.99 -181.00 -0.54 -13.78 16 17 C 0.10 1.75 10.19 59.85 0.61 2.36 16 18 C 0.25 6.26 4.92 -5.19 -0.03 6.23 16 19 C -0.53 -14.47 9.39 -34.44 -0.32 -14.80 16 20 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 23 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.19 -3.79 9.12 -39.38 -0.36 -4.15 16 28 C -0.06 -1.07 6.80 -39.61 -0.27 -1.34 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.38 7.53 -51.93 -0.39 -0.02 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.61 6.96 -51.93 -0.36 0.25 16 33 H 0.07 0.67 6.29 -51.93 -0.33 0.34 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.58 7.78 -51.92 -0.40 0.18 16 36 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.26 4.66 -51.93 -0.24 1.02 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 41 H 0.04 0.45 6.70 -51.93 -0.35 0.10 16 42 H 0.08 0.92 6.24 -51.92 -0.32 0.59 16 43 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 47 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 48 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.04 0.94 6.19 -51.93 -0.32 0.62 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.13 2.89 6.14 -52.48 -0.32 2.57 16 52 H 0.10 1.64 7.27 -52.48 -0.38 1.26 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -28.28 390.17 -11.32 -39.59 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -9.02 Total: 2.47 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.29 Total: -18.20 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.86 Total: -46.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.28 -11.32 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809768538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.392 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds