Wall clock time and date at job start Tue Mar 31 2020 11:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 H 1.08995 * 110.01018 * 56.50662 * 3 2 1 5 5 C 1.54321 * 109.88614 * 295.39267 * 3 2 1 6 6 C 1.55135 * 103.02148 * 218.31271 * 5 3 2 7 7 C 1.54905 * 101.65430 * 35.65447 * 6 5 3 8 8 H 1.09004 * 110.37786 * 81.76021 * 7 6 5 9 9 C 1.53000 * 110.46834 * 204.05590 * 7 6 5 10 10 N 1.47446 * 109.88874 * 177.62877 * 3 2 1 11 11 C 1.46902 * 110.99946 * 356.14542 * 10 3 2 12 12 C 1.50700 * 109.46811 * 185.41312 * 11 10 3 13 13 C 1.38284 * 119.92829 * 89.99861 * 12 11 10 14 14 C 1.38105 * 120.07501 * 180.02562 * 13 12 11 15 15 C 1.38909 * 119.92460 * 0.02562 * 14 13 12 16 16 N 1.39675 * 120.07725 * 179.97438 * 15 14 13 17 17 C 1.46499 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.46501 * 120.00383 * 180.02562 * 16 15 14 19 19 C 1.50707 * 109.46581 * 269.99903 * 18 16 15 20 20 H 1.07993 * 120.00351 * 359.71866 * 19 18 16 21 21 C 1.37878 * 119.99481 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99786 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46886 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47040 * 119.99944 * 23 21 19 26 26 H 1.48498 * 109.47221 * 239.99995 * 23 21 19 27 27 C 1.38912 * 119.85244 * 0.24947 * 15 14 13 28 28 C 1.38111 * 119.92211 * 359.49537 * 27 15 14 29 29 H 1.09003 * 109.47009 * 305.11918 * 1 2 3 30 30 H 1.08994 * 109.47390 * 65.12395 * 1 2 3 31 31 H 1.08997 * 109.47348 * 185.12356 * 1 2 3 32 32 H 1.09002 * 109.47217 * 239.99330 * 2 1 3 33 33 H 1.09004 * 109.47238 * 119.99856 * 2 1 3 34 34 H 1.09001 * 110.70444 * 99.92676 * 5 3 2 35 35 H 1.09011 * 110.85489 * 336.76674 * 5 3 2 36 36 H 1.08996 * 110.99415 * 277.56385 * 6 5 3 37 37 H 1.09004 * 110.99145 * 153.74703 * 6 5 3 38 38 H 1.09006 * 109.47012 * 175.42676 * 9 7 6 39 39 H 1.09001 * 109.46910 * 295.42372 * 9 7 6 40 40 H 1.08999 * 109.47282 * 55.42644 * 9 7 6 41 41 H 1.08993 * 109.47606 * 65.40567 * 11 10 3 42 42 H 1.09008 * 109.46800 * 305.40399 * 11 10 3 43 43 H 1.07994 * 119.96158 * 359.97438 * 13 12 11 44 44 H 1.07994 * 120.04087 * 179.97438 * 14 13 12 45 45 H 1.08998 * 109.47291 * 270.00424 * 17 16 15 46 46 H 1.09003 * 109.47046 * 30.00368 * 17 16 15 47 47 H 1.08996 * 109.47330 * 150.00163 * 17 16 15 48 48 H 1.08994 * 109.47444 * 149.99665 * 18 16 15 49 49 H 1.09002 * 109.47247 * 29.98975 * 18 16 15 50 50 H 0.97005 * 119.99643 * 180.02562 * 22 21 19 51 51 H 1.08007 * 120.04338 * 179.72879 * 27 15 14 52 52 H 1.08003 * 119.96218 * 180.25086 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6315 1.9825 0.8541 5 6 1.6283 2.1448 -1.3110 6 6 2.8680 3.0155 -1.6453 7 6 4.0272 2.1069 -1.1653 8 1 4.2633 1.3604 -1.9238 9 6 5.2652 2.9454 -0.8411 10 7 3.5133 1.4535 0.0574 11 6 4.0453 0.0906 0.1892 12 6 5.5392 0.1506 0.3780 13 6 6.0709 0.2335 1.6519 14 6 7.4395 0.2892 1.8284 15 6 8.2822 0.2624 0.7244 16 7 9.6668 0.3191 0.8992 17 6 10.2318 0.4075 2.2479 18 6 10.5541 0.2912 -0.2662 19 6 10.9073 -1.1366 -0.5945 20 1 10.5143 -1.9423 0.0077 21 6 11.7366 -1.4139 -1.6605 22 7 12.2188 -0.4325 -2.3912 23 14 12.1751 -3.1837 -2.0670 24 1 11.5091 -4.0932 -1.1003 25 1 11.7183 -3.5032 -3.4435 26 1 13.6468 -3.3615 -1.9802 27 6 7.7446 0.1848 -0.5541 28 6 6.3752 0.1241 -0.7232 29 1 -0.3633 0.5912 0.8406 30 1 -0.3634 0.4323 -0.9323 31 1 -0.3634 -1.0235 0.0918 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.7494 2.7700 -1.1537 35 1 1.4449 1.4160 -2.1006 36 1 2.8494 3.9518 -1.0878 37 1 2.9364 3.2023 -2.7171 38 1 6.0423 2.3016 -0.4289 39 1 5.6314 3.4197 -1.7516 40 1 5.0039 3.7121 -0.1117 41 1 3.8154 -0.4780 -0.7118 42 1 3.5893 -0.3955 1.0518 43 1 5.4151 0.2556 2.5096 44 1 7.8541 0.3544 2.8234 45 1 10.3365 1.4551 2.5301 46 1 9.5691 -0.0942 2.9531 47 1 11.2102 -0.0727 2.2643 48 1 11.4638 0.8487 -0.0437 49 1 10.0488 0.7455 -1.1185 50 1 12.8020 -0.6277 -3.1414 51 1 8.3969 0.1681 -1.4149 52 1 5.9568 0.0597 -1.7168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809768538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:10 Heat of formation + Delta-G solvation = 18.105759 kcal Electronic energy + Delta-G solvation = -27241.107270 eV Core-core repulsion = 23818.524431 eV Total energy + Delta-G solvation = -3422.582839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15797 -39.97121 -37.30639 -34.90279 -34.75025 -33.50443 -31.92277 -30.80790 -30.44617 -29.54829 -27.26747 -26.22460 -25.57995 -24.14851 -23.47659 -23.02346 -21.43597 -21.15965 -19.91421 -18.63904 -18.03265 -17.00362 -16.88267 -16.84458 -16.21182 -15.94166 -15.50936 -15.34390 -14.90851 -14.86539 -14.48691 -14.35647 -14.26188 -14.10546 -13.71370 -13.55402 -13.41927 -13.17040 -13.16346 -13.02891 -12.86342 -12.69620 -12.66969 -12.54634 -12.24854 -12.13306 -12.07441 -11.98875 -11.75605 -11.69157 -11.51662 -11.48355 -11.30493 -11.16087 -10.65060 -10.28990 -9.60072 -9.10230 -8.35879 -7.77185 -6.37908 0.73282 0.87876 1.35224 1.36723 1.49156 2.33840 2.64905 2.95209 3.05597 3.33132 3.74843 3.79821 3.95261 4.06345 4.17392 4.21260 4.26523 4.33424 4.42254 4.44509 4.52235 4.53226 4.61985 4.65829 4.70009 4.73018 4.78088 4.87159 4.88059 4.89063 4.96653 5.00863 5.01498 5.04112 5.11637 5.14044 5.20607 5.21591 5.23544 5.33403 5.37968 5.39330 5.51536 5.53801 5.60436 5.70210 5.71200 5.95080 6.07169 6.20929 6.25236 6.31983 6.51189 6.83337 6.95747 7.34115 8.82931 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.002993 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.805537 B = 9353.741955 C = 9562.483695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.072 3.928 4 H 0.086 0.914 5 C -0.130 4.130 6 C -0.125 4.125 7 C 0.074 3.926 8 H 0.041 0.959 9 C -0.139 4.139 10 N -0.524 5.524 11 C 0.108 3.892 12 C -0.150 4.150 13 C -0.051 4.051 14 C -0.218 4.218 15 C 0.214 3.786 16 N -0.633 5.633 17 C 0.099 3.901 18 C 0.267 3.733 19 C -0.539 4.539 20 H 0.049 0.951 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.962 3.038 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.274 1.274 27 C -0.214 4.214 28 C -0.059 4.059 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.008 0.992 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.092 0.908 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.902 4.004 5.734 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C -0.035 4.035 4 H 0.104 0.896 5 C -0.168 4.168 6 C -0.163 4.163 7 C -0.034 4.034 8 H 0.059 0.941 9 C -0.197 4.197 10 N -0.248 5.248 11 C -0.019 4.019 12 C -0.153 4.153 13 C -0.070 4.070 14 C -0.240 4.240 15 C 0.109 3.891 16 N -0.341 5.341 17 C -0.044 4.044 18 C 0.146 3.854 19 C -0.578 4.578 20 H 0.067 0.933 21 C -0.187 4.187 22 N -0.567 5.567 23 Si 0.787 3.213 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.200 1.200 27 C -0.236 4.236 28 C -0.079 4.079 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.111 0.889 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.026 0.974 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.388 4.335 6.070 23.598 hybrid contribution 0.937 -1.221 -1.393 2.075 sum -21.451 3.114 4.677 22.175 Atomic orbital electron populations 1.21709 0.94378 1.01988 1.02246 1.22118 0.97292 0.96292 1.02080 1.22541 0.86665 0.96006 0.98312 0.89645 1.22838 0.98266 0.98848 0.96876 1.22760 0.93755 0.98419 1.01330 1.22472 0.95219 0.95487 0.90262 0.94068 1.21852 0.97467 0.99699 1.00681 1.63715 1.06249 1.17361 1.37488 1.21063 0.90024 0.89783 1.01044 1.19478 0.95153 1.07962 0.92690 1.20820 0.93474 0.95709 0.96961 1.20777 0.93722 1.12548 0.97000 1.18168 0.83706 0.92951 0.94243 1.46946 1.02674 1.77566 1.06904 1.21586 0.98982 1.00753 0.83115 1.18755 0.87857 0.95351 0.83466 1.21804 1.29042 0.93509 1.13472 0.93308 1.25786 0.95593 1.01612 0.95733 1.70048 1.33967 1.33292 1.19377 0.85451 0.78121 0.79674 0.78098 1.19482 1.20271 1.19951 1.20684 0.95827 1.11487 0.95645 1.20679 0.91734 0.97094 0.98357 0.92117 0.92371 0.92467 0.92562 0.91133 0.89542 0.91354 0.90667 0.90471 0.92954 0.93132 0.92757 0.94450 0.88878 0.84396 0.85148 0.93081 0.90355 0.92554 0.97403 0.97189 0.92405 0.88935 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.65 71.98 0.69 -0.99 16 2 C -0.14 -2.08 4.08 30.59 0.12 -1.96 16 3 C 0.07 1.23 3.49 45.26 0.16 1.39 16 4 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.13 -1.95 5.57 31.77 0.18 -1.77 16 6 C -0.12 -2.24 6.50 31.98 0.21 -2.03 16 7 C 0.07 1.71 2.41 45.38 0.11 1.82 16 8 H 0.04 1.04 6.69 -2.38 -0.02 1.03 16 9 C -0.14 -3.75 9.10 71.98 0.66 -3.10 16 10 N -0.52 -11.59 4.87 -840.29 -4.09 -15.68 16 11 C 0.11 2.51 3.83 85.56 0.33 2.84 16 12 C -0.15 -4.43 3.93 -19.84 -0.08 -4.51 16 13 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 14 C -0.22 -7.38 9.21 22.40 0.21 -7.17 16 15 C 0.21 8.87 6.55 38.21 0.25 9.12 16 16 N -0.63 -28.25 2.99 -726.56 -2.17 -30.43 16 17 C 0.10 3.51 10.19 127.77 1.30 4.81 16 18 C 0.27 14.29 4.92 85.63 0.42 14.71 16 19 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 20 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 21 C 0.01 0.67 5.46 84.65 0.46 1.13 16 22 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 23 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C -0.21 -9.06 9.12 22.40 0.20 -8.86 16 28 C -0.06 -2.06 6.80 22.25 0.15 -1.90 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.63 7.53 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.93 6.96 -2.39 -0.02 0.92 16 33 H 0.07 1.08 6.29 -2.39 -0.01 1.06 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.01 7.78 -2.38 -0.02 0.99 16 36 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.05 1.69 4.66 -2.38 -0.01 1.68 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 41 H 0.04 0.87 6.70 -2.39 -0.02 0.86 16 42 H 0.09 1.90 6.24 -2.38 -0.01 1.89 16 43 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 2.37 6.20 -2.39 -0.01 2.36 16 47 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 48 H 0.01 0.45 8.07 -2.39 -0.02 0.43 16 49 H 0.01 0.58 6.19 -2.39 -0.01 0.57 16 50 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 51 H 0.09 4.55 6.14 -2.91 -0.02 4.53 16 52 H 0.11 3.61 7.27 -2.91 -0.02 3.59 16 Total: -1.00 -63.05 390.17 2.75 -60.30 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.88 Total: 22.14 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 5.83 Total: -28.21 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -5.98 Total: -100.75 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.05 2.75 -60.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809768538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.404 kcal (2) G-P(sol) polarization free energy of solvation -63.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds