Wall clock time and date at job start Tue Mar 31 2020 11:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47470 * 2 1 4 4 H 1.09005 * 110.06316 * 58.97823 * 3 2 1 5 5 C 1.53990 * 109.91516 * 180.17942 * 3 2 1 6 6 C 1.55041 * 105.18173 * 120.59107 * 5 3 2 7 7 C 1.54932 * 102.71583 * 21.91896 * 6 5 3 8 8 H 1.09004 * 110.67275 * 81.12050 * 7 6 5 9 9 C 1.53001 * 110.66677 * 204.08175 * 7 6 5 10 10 N 1.47895 * 109.91690 * 297.77372 * 3 2 1 11 11 C 1.46900 * 111.00344 * 94.79882 * 10 3 2 12 12 C 1.50697 * 109.46691 * 54.98146 * 11 10 3 13 13 C 1.38284 * 119.92454 * 269.72215 * 12 11 10 14 14 C 1.38107 * 120.07400 * 179.72488 * 13 12 11 15 15 C 1.38918 * 119.92422 * 0.55725 * 14 13 12 16 16 N 1.39670 * 120.07551 * 179.70542 * 15 14 13 17 17 C 1.46501 * 120.00138 * 180.02562 * 16 15 14 18 18 C 1.46503 * 120.00190 * 0.02562 * 16 15 14 19 19 C 1.50702 * 109.47104 * 90.00313 * 18 16 15 20 20 H 1.08005 * 119.99692 * 0.02562 * 19 18 16 21 21 C 1.37873 * 120.00458 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99445 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46966 * 59.99974 * 23 21 19 25 25 H 1.48499 * 109.47212 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47215 * 300.00073 * 23 21 19 27 27 C 1.38913 * 119.84652 * 359.71887 * 15 14 13 28 28 C 1.38102 * 119.92697 * 0.02562 * 27 15 14 29 29 H 1.09007 * 109.46455 * 305.93523 * 1 2 3 30 30 H 1.08993 * 109.46930 * 65.93017 * 1 2 3 31 31 H 1.08998 * 109.47152 * 185.93274 * 1 2 3 32 32 H 1.08996 * 109.47036 * 240.00010 * 2 1 3 33 33 H 1.09009 * 109.47128 * 120.00361 * 2 1 3 34 34 H 1.09007 * 110.30682 * 239.49052 * 5 3 2 35 35 H 1.08996 * 110.31313 * 1.56120 * 5 3 2 36 36 H 1.08996 * 110.73950 * 263.66659 * 6 5 3 37 37 H 1.09001 * 110.90732 * 140.24543 * 6 5 3 38 38 H 1.09001 * 109.47050 * 176.29352 * 9 7 6 39 39 H 1.08996 * 109.47075 * 296.28906 * 9 7 6 40 40 H 1.09002 * 109.47252 * 56.29972 * 9 7 6 41 41 H 1.09003 * 109.46791 * 174.98055 * 11 10 3 42 42 H 1.08995 * 109.46977 * 294.97995 * 11 10 3 43 43 H 1.07994 * 119.96733 * 359.97438 * 13 12 11 44 44 H 1.07999 * 120.03962 * 180.27392 * 14 13 12 45 45 H 1.08995 * 109.47317 * 89.99577 * 17 16 15 46 46 H 1.08998 * 109.47410 * 209.99734 * 17 16 15 47 47 H 1.09004 * 109.46596 * 329.99368 * 17 16 15 48 48 H 1.09000 * 109.47209 * 210.00594 * 18 16 15 49 49 H 1.09005 * 109.46781 * 330.00881 * 18 16 15 50 50 H 0.97006 * 119.99650 * 180.02562 * 22 21 19 51 51 H 1.08004 * 120.03417 * 180.02562 * 27 15 14 52 52 H 1.08002 * 119.95907 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6673 1.9710 0.8775 5 6 3.5800 1.4543 -0.0045 6 6 3.9763 2.2203 -1.2930 7 6 2.7052 3.0508 -1.6006 8 1 2.6779 3.9532 -0.9897 9 6 2.6386 3.4054 -3.0875 10 7 1.5972 2.1335 -1.2303 11 6 0.3527 2.8783 -0.9969 12 6 0.5418 3.8212 0.1633 13 6 0.2531 3.4003 1.4485 14 6 0.4306 4.2601 2.5146 15 6 0.8888 5.5528 2.2935 16 7 1.0636 6.4269 3.3687 17 6 1.5463 7.7900 3.1337 18 6 0.7642 5.9808 4.7317 19 6 2.0015 5.3787 5.3463 20 1 2.9192 5.3334 4.7786 21 6 1.9622 4.8858 6.6333 22 7 0.8445 4.9405 7.3244 23 14 3.4960 4.1402 7.3953 24 1 4.5749 5.1599 7.4346 25 1 3.1926 3.6879 8.7768 26 1 3.9401 2.9809 6.5806 27 6 1.1723 5.9741 1.0005 28 6 0.9976 5.1075 -0.0604 29 1 -0.3632 0.6032 0.8322 30 1 -0.3633 0.4191 -0.9383 31 1 -0.3633 -1.0221 0.1062 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9569 1.9753 0.8757 35 1 3.9661 0.4355 -0.0346 36 1 4.1889 1.5252 -2.1052 37 1 4.8292 2.8739 -1.1101 38 1 1.7066 3.9316 -3.2941 39 1 3.4821 4.0452 -3.3465 40 1 2.6794 2.4921 -3.6810 41 1 0.0973 3.4480 -1.8904 42 1 -0.4519 2.1790 -0.7695 43 1 -0.1078 2.3969 1.6192 44 1 0.2092 3.9294 3.5185 45 1 0.6969 8.4529 2.9688 46 1 2.1098 8.1308 4.0022 47 1 2.1913 7.8005 2.2551 48 1 0.4390 6.8322 5.3295 49 1 -0.0281 5.2327 4.7033 50 1 0.8169 4.5940 8.2300 51 1 1.5291 6.9783 0.8252 52 1 1.2175 5.4346 -1.0659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809768540.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:17 Heat of formation + Delta-G solvation = 29.114115 kcal Electronic energy + Delta-G solvation = -27909.965813 eV Core-core repulsion = 24487.860332 eV Total energy + Delta-G solvation = -3422.105481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18937 -38.43149 -35.70976 -33.82877 -32.94405 -32.26167 -30.54212 -30.07611 -28.93305 -27.84054 -26.11360 -25.34867 -24.17078 -22.53136 -22.17496 -21.66069 -20.08395 -19.84935 -19.37458 -16.64767 -16.45694 -16.29129 -15.31877 -15.17860 -15.08433 -14.40128 -14.26278 -13.84955 -13.75038 -13.49017 -13.38720 -13.22232 -13.00543 -12.87157 -12.54344 -12.24194 -12.18333 -11.95952 -11.71904 -11.62432 -11.55648 -11.40830 -11.29080 -11.14295 -10.96028 -10.88703 -10.72222 -10.65239 -10.50723 -10.34258 -10.27780 -10.21378 -9.92003 -9.78277 -8.84779 -8.53766 -8.28967 -8.16999 -6.50677 -6.05456 -4.21103 2.02571 2.17662 3.25027 3.29785 3.32782 4.10408 4.12508 4.37649 4.48654 4.70957 4.80069 5.08839 5.12415 5.18156 5.29031 5.29924 5.40121 5.43310 5.48631 5.53624 5.56096 5.60805 5.68791 5.74313 5.77518 5.87628 5.91158 5.97384 5.99030 6.00858 6.03361 6.10294 6.11557 6.16822 6.21921 6.27730 6.31051 6.32391 6.38455 6.41965 6.53697 6.58199 6.89166 6.97431 7.05127 7.17152 7.24415 7.28909 7.32905 7.54374 7.77063 8.11486 8.22121 8.43905 8.87345 9.45839 10.92220 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.004103 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.658542 B = 6821.862052 C = 7608.530507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C 0.050 3.950 4 H 0.079 0.921 5 C -0.127 4.127 6 C -0.117 4.117 7 C 0.050 3.950 8 H 0.069 0.931 9 C -0.133 4.133 10 N -0.497 5.497 11 C 0.089 3.911 12 C -0.205 4.205 13 C -0.064 4.064 14 C -0.187 4.187 15 C 0.242 3.758 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.532 4.532 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.222 4.222 28 C -0.063 4.063 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.131 0.869 45 H 0.036 0.964 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.265 0.735 51 H 0.112 0.888 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -4.240 -17.419 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.058 4.058 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.155 4.155 7 C -0.059 4.059 8 H 0.087 0.913 9 C -0.191 4.191 10 N -0.220 5.220 11 C -0.038 4.038 12 C -0.209 4.209 13 C -0.084 4.084 14 C -0.210 4.210 15 C 0.135 3.865 16 N -0.320 5.320 17 C -0.046 4.046 18 C 0.130 3.870 19 C -0.571 4.571 20 H 0.076 0.924 21 C -0.139 4.139 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.245 4.245 28 C -0.083 4.083 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.130 0.870 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.118 -4.511 -17.455 18.063 hybrid contribution 1.047 0.291 1.375 1.753 sum 2.166 -4.220 -16.080 16.765 Atomic orbital electron populations 1.21900 0.96183 1.00883 1.02078 1.21477 0.95939 0.95538 1.01211 1.22639 0.94182 0.95296 0.93703 0.90365 1.22494 0.95378 1.00606 0.98071 1.22552 0.96930 0.98441 0.97563 1.22876 0.90676 0.95828 0.96473 0.91313 1.21649 1.01077 1.01169 0.95158 1.65018 1.02725 1.24466 1.29825 1.21278 0.93133 0.94360 0.95078 1.19964 1.09671 0.95959 0.95353 1.20715 0.97676 0.98108 0.91856 1.20894 1.07051 0.93110 0.99922 1.17947 0.91240 0.89949 0.87359 1.47108 1.68168 1.10399 1.06329 1.21472 0.97952 0.83790 1.01365 1.19282 0.96393 0.95573 0.75783 1.21520 0.97129 1.39767 0.98706 0.92391 1.24948 0.96313 0.95764 0.96916 1.69921 1.25941 1.46296 1.11174 0.86593 0.83141 0.79706 0.78248 1.20234 1.21122 1.20104 1.20561 1.11707 1.00628 0.91618 1.20533 0.97627 0.92846 0.97285 0.92906 0.91788 0.93489 0.91923 0.92313 0.91603 0.91466 0.91293 0.91653 0.92914 0.92767 0.92271 0.91074 0.89974 0.87071 0.85113 0.94593 0.91434 0.92741 0.95212 0.94661 0.92556 0.86978 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.54 37.16 0.32 -1.37 16 2 C -0.10 -1.20 5.42 -26.73 -0.14 -1.35 16 3 C 0.05 0.65 2.42 -66.65 -0.16 0.49 16 4 H 0.08 1.19 4.18 -51.93 -0.22 0.98 16 5 C -0.13 -1.59 6.58 -25.14 -0.17 -1.76 16 6 C -0.12 -1.34 6.53 -24.63 -0.16 -1.50 16 7 C 0.05 0.59 2.71 -65.79 -0.18 0.42 16 8 H 0.07 0.95 5.02 -51.93 -0.26 0.69 16 9 C -0.13 -1.34 9.47 37.16 0.35 -0.99 16 10 N -0.50 -6.16 4.63 -216.23 -1.00 -7.17 16 11 C 0.09 1.13 5.20 -4.98 -0.03 1.10 16 12 C -0.21 -3.08 4.12 -104.59 -0.43 -3.51 16 13 C -0.06 -1.08 7.53 -39.61 -0.30 -1.37 16 14 C -0.19 -3.73 9.21 -39.38 -0.36 -4.10 16 15 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 16 N -0.61 -13.04 2.99 -180.99 -0.54 -13.58 16 17 C 0.10 1.72 10.19 59.85 0.61 2.33 16 18 C 0.25 6.21 4.91 -5.19 -0.03 6.19 16 19 C -0.53 -14.41 9.39 -34.44 -0.32 -14.74 16 20 H 0.06 1.61 7.81 -52.48 -0.41 1.19 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 23 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C -0.22 -3.81 9.21 -39.38 -0.36 -4.17 16 28 C -0.06 -0.97 7.71 -39.61 -0.31 -1.27 16 29 H 0.05 0.62 6.48 -51.93 -0.34 0.28 16 30 H 0.06 0.70 6.27 -51.93 -0.33 0.38 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 36 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.52 7.41 -51.93 -0.38 0.14 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.85 7.29 -51.93 -0.38 0.47 16 42 H 0.08 1.01 5.26 -51.93 -0.27 0.73 16 43 H 0.11 1.71 6.09 -52.49 -0.32 1.39 16 44 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 50 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 51 H 0.11 1.75 6.14 -52.48 -0.32 1.43 16 52 H 0.11 1.40 7.77 -52.49 -0.41 0.99 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -27.76 386.49 -11.09 -38.85 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.77 Total: 4.31 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -2.31 Total: -19.68 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.81 Total: -45.48 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.76 -11.09 -38.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809768540.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.965 kcal (2) G-P(sol) polarization free energy of solvation -27.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds