Wall clock time and date at job start Tue Mar 31 2020 11:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47470 * 2 1 4 4 H 1.09005 * 110.06316 * 58.97823 * 3 2 1 5 5 C 1.53990 * 109.91516 * 180.17942 * 3 2 1 6 6 C 1.55041 * 105.18173 * 120.59107 * 5 3 2 7 7 C 1.54932 * 102.71583 * 21.91896 * 6 5 3 8 8 H 1.09004 * 110.67275 * 81.12050 * 7 6 5 9 9 C 1.53001 * 110.66677 * 204.08175 * 7 6 5 10 10 N 1.47895 * 109.91690 * 297.77372 * 3 2 1 11 11 C 1.46900 * 111.00344 * 94.79882 * 10 3 2 12 12 C 1.50697 * 109.46691 * 54.98146 * 11 10 3 13 13 C 1.38284 * 119.92454 * 269.72215 * 12 11 10 14 14 C 1.38107 * 120.07400 * 179.72488 * 13 12 11 15 15 C 1.38918 * 119.92422 * 0.55725 * 14 13 12 16 16 N 1.39670 * 120.07551 * 179.70542 * 15 14 13 17 17 C 1.46501 * 120.00138 * 180.02562 * 16 15 14 18 18 C 1.46503 * 120.00190 * 0.02562 * 16 15 14 19 19 C 1.50702 * 109.47104 * 90.00313 * 18 16 15 20 20 H 1.08005 * 119.99692 * 0.02562 * 19 18 16 21 21 C 1.37873 * 120.00458 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99445 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46966 * 59.99974 * 23 21 19 25 25 H 1.48499 * 109.47212 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47215 * 300.00073 * 23 21 19 27 27 C 1.38913 * 119.84652 * 359.71887 * 15 14 13 28 28 C 1.38102 * 119.92697 * 0.02562 * 27 15 14 29 29 H 1.09007 * 109.46455 * 305.93523 * 1 2 3 30 30 H 1.08993 * 109.46930 * 65.93017 * 1 2 3 31 31 H 1.08998 * 109.47152 * 185.93274 * 1 2 3 32 32 H 1.08996 * 109.47036 * 240.00010 * 2 1 3 33 33 H 1.09009 * 109.47128 * 120.00361 * 2 1 3 34 34 H 1.09007 * 110.30682 * 239.49052 * 5 3 2 35 35 H 1.08996 * 110.31313 * 1.56120 * 5 3 2 36 36 H 1.08996 * 110.73950 * 263.66659 * 6 5 3 37 37 H 1.09001 * 110.90732 * 140.24543 * 6 5 3 38 38 H 1.09001 * 109.47050 * 176.29352 * 9 7 6 39 39 H 1.08996 * 109.47075 * 296.28906 * 9 7 6 40 40 H 1.09002 * 109.47252 * 56.29972 * 9 7 6 41 41 H 1.09003 * 109.46791 * 174.98055 * 11 10 3 42 42 H 1.08995 * 109.46977 * 294.97995 * 11 10 3 43 43 H 1.07994 * 119.96733 * 359.97438 * 13 12 11 44 44 H 1.07999 * 120.03962 * 180.27392 * 14 13 12 45 45 H 1.08995 * 109.47317 * 89.99577 * 17 16 15 46 46 H 1.08998 * 109.47410 * 209.99734 * 17 16 15 47 47 H 1.09004 * 109.46596 * 329.99368 * 17 16 15 48 48 H 1.09000 * 109.47209 * 210.00594 * 18 16 15 49 49 H 1.09005 * 109.46781 * 330.00881 * 18 16 15 50 50 H 0.97006 * 119.99650 * 180.02562 * 22 21 19 51 51 H 1.08004 * 120.03417 * 180.02562 * 27 15 14 52 52 H 1.08002 * 119.95907 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6673 1.9710 0.8775 5 6 3.5800 1.4543 -0.0045 6 6 3.9763 2.2203 -1.2930 7 6 2.7052 3.0508 -1.6006 8 1 2.6779 3.9532 -0.9897 9 6 2.6386 3.4054 -3.0875 10 7 1.5972 2.1335 -1.2303 11 6 0.3527 2.8783 -0.9969 12 6 0.5418 3.8212 0.1633 13 6 0.2531 3.4003 1.4485 14 6 0.4306 4.2601 2.5146 15 6 0.8888 5.5528 2.2935 16 7 1.0636 6.4269 3.3687 17 6 1.5463 7.7900 3.1337 18 6 0.7642 5.9808 4.7317 19 6 2.0015 5.3787 5.3463 20 1 2.9192 5.3334 4.7786 21 6 1.9622 4.8858 6.6333 22 7 0.8445 4.9405 7.3244 23 14 3.4960 4.1402 7.3953 24 1 4.5749 5.1599 7.4346 25 1 3.1926 3.6879 8.7768 26 1 3.9401 2.9809 6.5806 27 6 1.1723 5.9741 1.0005 28 6 0.9976 5.1075 -0.0604 29 1 -0.3632 0.6032 0.8322 30 1 -0.3633 0.4191 -0.9383 31 1 -0.3633 -1.0221 0.1062 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9569 1.9753 0.8757 35 1 3.9661 0.4355 -0.0346 36 1 4.1889 1.5252 -2.1052 37 1 4.8292 2.8739 -1.1101 38 1 1.7066 3.9316 -3.2941 39 1 3.4821 4.0452 -3.3465 40 1 2.6794 2.4921 -3.6810 41 1 0.0973 3.4480 -1.8904 42 1 -0.4519 2.1790 -0.7695 43 1 -0.1078 2.3969 1.6192 44 1 0.2092 3.9294 3.5185 45 1 0.6969 8.4529 2.9688 46 1 2.1098 8.1308 4.0022 47 1 2.1913 7.8005 2.2551 48 1 0.4390 6.8322 5.3295 49 1 -0.0281 5.2327 4.7033 50 1 0.8169 4.5940 8.2300 51 1 1.5291 6.9783 0.8252 52 1 1.2175 5.4346 -1.0659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809768540.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:16 Heat of formation + Delta-G solvation = 15.969052 kcal Electronic energy + Delta-G solvation = -27910.535826 eV Core-core repulsion = 24487.860332 eV Total energy + Delta-G solvation = -3422.675493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33648 -39.75143 -37.20479 -34.86971 -34.74349 -33.53977 -31.95253 -31.01255 -30.27596 -29.57930 -27.29052 -26.55761 -25.65110 -24.01728 -23.37765 -22.87102 -21.26229 -21.05178 -20.49422 -18.66185 -18.05134 -17.31441 -16.90519 -16.38548 -16.25773 -16.03907 -15.42617 -15.36623 -15.00668 -14.73900 -14.46668 -14.29305 -14.19745 -14.15231 -14.04105 -13.61119 -13.23356 -13.18582 -13.08743 -12.89640 -12.86295 -12.75532 -12.63586 -12.55680 -12.49394 -12.25703 -12.10638 -11.91249 -11.76178 -11.60866 -11.51231 -11.36342 -11.26570 -11.15199 -10.66764 -10.39606 -9.65654 -9.22925 -8.38798 -7.83492 -6.40258 0.63695 0.79988 1.34418 1.35938 1.44330 2.31305 2.59721 3.00373 3.03737 3.22988 3.74799 3.84224 3.99868 4.06107 4.16403 4.22651 4.24365 4.38132 4.39960 4.46273 4.51589 4.58485 4.62958 4.67324 4.69963 4.77975 4.80682 4.84531 4.88394 4.95232 4.97114 5.00888 5.04048 5.06092 5.11597 5.16335 5.18932 5.20571 5.27104 5.29320 5.35699 5.41943 5.49363 5.55337 5.57059 5.65153 5.66291 5.83704 6.04048 6.15869 6.17552 6.27243 6.46371 6.79111 6.89737 7.31592 8.80513 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.004103 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.658542 B = 6821.862052 C = 7608.530507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C 0.047 3.953 4 H 0.052 0.948 5 C -0.131 4.131 6 C -0.113 4.113 7 C 0.046 3.954 8 H 0.052 0.948 9 C -0.127 4.127 10 N -0.489 5.489 11 C 0.091 3.909 12 C -0.189 4.189 13 C -0.061 4.061 14 C -0.217 4.217 15 C 0.215 3.785 16 N -0.631 5.631 17 C 0.098 3.902 18 C 0.268 3.732 19 C -0.542 4.542 20 H 0.047 0.953 21 C 0.015 3.985 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.274 1.274 27 C -0.217 4.217 28 C -0.056 4.056 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.268 0.732 51 H 0.132 0.868 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -4.744 -20.486 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.061 4.061 4 H 0.070 0.930 5 C -0.169 4.169 6 C -0.151 4.151 7 C -0.062 4.062 8 H 0.070 0.930 9 C -0.184 4.184 10 N -0.212 5.212 11 C -0.036 4.036 12 C -0.193 4.193 13 C -0.081 4.081 14 C -0.239 4.239 15 C 0.110 3.890 16 N -0.339 5.339 17 C -0.045 4.045 18 C 0.146 3.854 19 C -0.581 4.581 20 H 0.066 0.934 21 C -0.184 4.184 22 N -0.565 5.565 23 Si 0.784 3.216 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.200 1.200 27 C -0.240 4.240 28 C -0.075 4.075 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.077 0.923 51 H 0.149 0.851 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.251 -5.011 -20.564 21.285 hybrid contribution 0.675 0.384 2.220 2.352 sum 2.926 -4.627 -18.343 19.143 Atomic orbital electron populations 1.21865 0.95750 1.01427 1.01681 1.21444 0.96280 0.94566 1.01513 1.22626 0.94535 0.95978 0.92955 0.93009 1.22509 0.95092 1.01301 0.97989 1.22563 0.96885 0.98525 0.97130 1.22956 0.90624 0.94992 0.97661 0.93025 1.21610 1.01891 1.01631 0.93312 1.65089 1.02770 1.24305 1.28990 1.21363 0.93578 0.94137 0.94532 1.20280 1.07370 0.96425 0.95255 1.20818 0.97271 0.97948 0.92018 1.20766 1.09608 0.94432 0.99132 1.18200 0.92774 0.89852 0.88210 1.46962 1.69778 1.12016 1.05103 1.21595 0.98841 0.82189 1.01829 1.18758 0.94908 0.93811 0.77934 1.21714 0.97334 1.39981 0.99027 0.93443 1.25747 0.99247 0.96071 0.97365 1.70029 1.27829 1.47131 1.11529 0.85598 0.79607 0.78908 0.77532 1.19322 1.20238 1.19972 1.20794 1.10851 1.01832 0.90549 1.20899 0.96061 0.92349 0.98227 0.94114 0.91444 0.92355 0.91082 0.92485 0.93719 0.90288 0.89968 0.91300 0.92416 0.91610 0.91912 0.89197 0.89438 0.86302 0.88903 0.92905 0.92536 0.90413 0.97300 0.97241 0.92346 0.85060 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.54 71.98 0.61 -2.46 16 2 C -0.10 -2.16 5.42 30.60 0.17 -2.00 16 3 C 0.05 1.18 2.42 45.06 0.11 1.28 16 4 H 0.05 1.58 4.18 -2.38 -0.01 1.57 16 5 C -0.13 -3.12 6.58 31.63 0.21 -2.91 16 6 C -0.11 -2.31 6.53 31.95 0.21 -2.10 16 7 C 0.05 0.96 2.71 45.26 0.12 1.08 16 8 H 0.05 1.28 5.02 -2.39 -0.01 1.27 16 9 C -0.13 -2.06 9.47 71.98 0.68 -1.37 16 10 N -0.49 -10.84 4.63 -838.01 -3.88 -14.72 16 11 C 0.09 2.07 5.20 85.56 0.44 2.51 16 12 C -0.19 -5.39 4.12 -19.84 -0.08 -5.47 16 13 C -0.06 -2.10 7.53 22.25 0.17 -1.93 16 14 C -0.22 -9.14 9.21 22.40 0.21 -8.94 16 15 C 0.21 8.79 6.55 38.22 0.25 9.04 16 16 N -0.63 -27.80 2.99 -726.54 -2.17 -29.98 16 17 C 0.10 3.44 10.19 127.77 1.30 4.74 16 18 C 0.27 14.19 4.91 85.63 0.42 14.61 16 19 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 20 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 21 C 0.02 0.86 5.46 84.65 0.46 1.32 16 22 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 23 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 27 C -0.22 -7.16 9.21 22.40 0.21 -6.95 16 28 C -0.06 -1.57 7.71 22.25 0.17 -1.40 16 29 H 0.04 0.92 6.48 -2.38 -0.02 0.91 16 30 H 0.07 1.33 6.27 -2.39 -0.01 1.31 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.66 7.69 -2.39 -0.02 1.65 16 36 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 0.89 7.41 -2.39 -0.02 0.87 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.77 7.29 -2.39 -0.02 1.75 16 42 H 0.09 1.93 5.26 -2.39 -0.01 1.92 16 43 H 0.12 3.78 6.09 -2.91 -0.02 3.76 16 44 H 0.09 4.56 6.14 -2.91 -0.02 4.54 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 47 H 0.08 2.31 6.20 -2.38 -0.01 2.29 16 48 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 49 H 0.01 0.55 6.20 -2.38 -0.01 0.54 16 50 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 51 H 0.13 3.76 6.14 -2.91 -0.02 3.75 16 52 H 0.14 3.04 7.77 -2.91 -0.02 3.02 16 Total: -1.00 -62.19 386.49 3.05 -59.14 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.89 Total: 24.90 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 5.90 Total: -31.36 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -5.77 Total: -99.01 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.19 3.05 -59.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809768540.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.108 kcal (2) G-P(sol) polarization free energy of solvation -62.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds