Wall clock time and date at job start Tue Mar 31 2020 10:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46748 * 2 1 4 4 N 1.46897 * 110.02152 * 55.31068 * 3 2 1 5 5 C 1.46897 * 111.00115 * 57.02315 * 4 3 2 6 6 C 1.50700 * 109.47263 * 174.43842 * 5 4 3 7 7 C 1.38282 * 119.92517 * 270.27447 * 6 5 4 8 8 C 1.38109 * 120.07664 * 180.27554 * 7 6 5 9 9 C 1.38911 * 119.92010 * 359.45465 * 8 7 6 10 10 N 1.39670 * 120.06991 * 180.25318 * 9 8 7 11 11 C 1.46493 * 120.00414 * 359.97438 * 10 9 8 12 12 C 1.46511 * 119.99599 * 179.97438 * 10 9 8 13 13 C 1.50694 * 109.46816 * 90.00256 * 12 10 9 14 14 H 1.08001 * 120.00260 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00070 * 180.02562 * 13 12 10 16 16 N 1.31506 * 120.00328 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99761 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46771 * 90.00237 * 17 15 13 19 19 H 1.48498 * 109.47037 * 210.00351 * 17 15 13 20 20 H 1.48499 * 109.47221 * 330.00505 * 17 15 13 21 21 C 1.38912 * 119.85128 * 0.26831 * 9 8 7 22 22 C 1.38100 * 119.92875 * 0.02562 * 21 9 8 23 23 C 1.53878 * 110.06897 * 176.72983 * 3 2 1 24 24 C 1.54269 * 106.59754 * 119.30487 * 23 3 2 25 25 C 1.54888 * 104.19823 * 23.61068 * 24 23 3 26 26 C 1.54268 * 110.03004 * 293.91684 * 3 2 1 27 27 H 1.09001 * 109.47095 * 174.67827 * 1 2 3 28 28 H 1.08998 * 109.47254 * 294.67206 * 1 2 3 29 29 H 1.08994 * 109.47153 * 54.67753 * 1 2 3 30 30 H 1.08997 * 109.46751 * 239.99823 * 2 1 3 31 31 H 1.09002 * 109.47127 * 119.99815 * 2 1 3 32 32 H 1.00901 * 110.99458 * 293.07286 * 4 3 2 33 33 H 1.09000 * 109.47162 * 54.43548 * 5 4 3 34 34 H 1.09004 * 109.46910 * 294.44179 * 5 4 3 35 35 H 1.08005 * 119.96264 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.03502 * 179.71946 * 8 7 6 37 37 H 1.09002 * 109.47567 * 89.99787 * 11 10 9 38 38 H 1.08998 * 109.47128 * 210.00261 * 11 10 9 39 39 H 1.08998 * 109.46873 * 329.99879 * 11 10 9 40 40 H 1.08996 * 109.46683 * 209.99739 * 12 10 9 41 41 H 1.08998 * 109.47253 * 330.00238 * 12 10 9 42 42 H 0.97003 * 120.00165 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.03323 * 180.02562 * 21 9 8 44 44 H 1.07993 * 119.96976 * 179.97438 * 22 21 9 45 45 H 1.09003 * 110.02908 * 238.58897 * 23 3 2 46 46 H 1.08991 * 110.03623 * 0.02562 * 23 3 2 47 47 H 1.09000 * 110.48750 * 264.92850 * 24 23 3 48 48 H 1.09009 * 110.48343 * 142.28750 * 24 23 3 49 49 H 1.08997 * 110.75700 * 203.74294 * 25 24 23 50 50 H 1.08999 * 110.76081 * 80.36813 * 25 24 23 51 51 H 1.08994 * 110.49057 * 335.73682 * 26 3 2 52 52 H 1.09000 * 110.48924 * 98.38331 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4670 2.1785 1.1349 5 6 1.7826 1.5142 2.4065 6 6 1.2986 2.3657 3.5518 7 6 2.1336 3.3204 4.1026 8 6 1.6953 4.0986 5.1560 9 6 0.4099 3.9291 5.6547 10 7 -0.0385 4.7180 6.7165 11 6 0.8471 5.7251 7.3058 12 6 -1.3947 4.5383 7.2408 13 6 -1.3750 3.5108 8.3430 14 1 -0.4454 3.0385 8.6244 15 6 -2.5439 3.1727 8.9914 16 7 -2.5268 2.2757 9.9528 17 14 -4.1520 3.9891 8.5040 18 1 -4.8068 3.1933 7.4349 19 1 -5.0480 4.0623 9.6860 20 1 -3.8793 5.3604 8.0038 21 6 -0.4284 2.9731 5.0952 22 6 0.0185 2.1941 4.0461 23 6 3.5764 1.4594 0.0824 24 6 4.0785 2.1632 -1.1952 25 6 2.8811 3.0377 -1.6428 26 6 1.6620 2.1365 -1.3249 27 1 -0.3633 -1.0232 -0.0953 28 1 -0.3633 0.4290 0.9338 29 1 -0.3633 0.5941 -0.8384 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.4706 2.2940 1.0248 33 1 2.8609 1.3764 2.4865 34 1 1.2887 0.5431 2.4415 35 1 3.1313 3.4549 3.7112 36 1 2.3496 4.8409 5.5887 37 1 0.7164 6.6736 6.7849 38 1 0.6015 5.8527 8.3601 39 1 1.8827 5.3984 7.2111 40 1 -1.7606 5.4865 7.6346 41 1 -2.0520 4.1995 6.4400 42 1 -3.3492 2.0382 10.4093 43 1 -1.4284 2.8391 5.4804 44 1 -0.6325 1.4504 3.6109 45 1 3.8969 2.0138 0.9646 46 1 3.9595 0.4398 0.1220 47 1 4.3236 1.4299 -1.9635 48 1 4.9441 2.7871 -0.9720 49 1 2.9360 3.2508 -2.7104 50 1 2.8398 3.9612 -1.0652 51 1 1.5169 1.3989 -2.1141 52 1 0.7641 2.7409 -1.1965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824650142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:01 Heat of formation + Delta-G solvation = 19.499450 kcal Electronic energy + Delta-G solvation = -26699.684199 eV Core-core repulsion = 23277.161795 eV Total energy + Delta-G solvation = -3422.522404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85060 -38.85936 -36.09730 -34.45889 -32.70978 -32.10330 -30.52058 -29.60081 -29.00163 -28.32452 -27.12707 -25.48522 -23.84017 -22.90821 -22.11298 -21.35539 -20.81104 -19.51527 -18.80448 -16.94428 -16.73213 -16.04264 -15.69436 -15.53129 -15.10437 -14.79929 -14.39054 -14.24807 -13.93022 -13.57386 -13.42239 -13.30464 -13.11863 -12.96599 -12.87287 -12.46407 -12.18330 -11.99927 -11.87136 -11.63403 -11.48232 -11.41469 -11.33183 -11.18730 -11.12063 -10.93903 -10.89491 -10.73482 -10.62178 -10.57972 -10.52157 -10.24175 -10.03775 -9.58521 -8.88357 -8.66410 -8.32220 -8.25376 -6.39190 -6.15012 -4.14945 2.09127 2.21197 3.21077 3.29015 3.29894 4.06805 4.15089 4.31798 4.34852 4.48349 4.59274 4.79192 4.93984 4.99061 5.08702 5.15482 5.23376 5.31177 5.38011 5.40696 5.49193 5.52943 5.56719 5.61857 5.65418 5.70158 5.72805 5.79353 5.80260 5.81603 5.90457 5.96113 5.98583 6.02258 6.04142 6.05936 6.12377 6.25006 6.25848 6.34077 6.39365 6.57269 6.75565 6.76324 7.01918 7.07416 7.18972 7.25954 7.49659 7.52865 7.56106 8.05778 8.35671 8.51595 8.92727 9.44961 10.98035 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.002748 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.292815 B =10184.934466 C =10895.851997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.150 4.150 3 C 0.112 3.888 4 N -0.669 5.669 5 C 0.110 3.890 6 C -0.165 4.165 7 C -0.052 4.052 8 C -0.218 4.218 9 C 0.240 3.760 10 N -0.612 5.612 11 C 0.099 3.901 12 C 0.221 3.779 13 C -0.534 4.534 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.872 3.128 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.265 1.265 21 C -0.187 4.187 22 C -0.067 4.067 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.111 4.111 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.340 0.660 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 -0.398 -21.929 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.189 4.189 3 C 0.020 3.980 4 N -0.300 5.300 5 C -0.018 4.018 6 C -0.168 4.168 7 C -0.071 4.071 8 C -0.241 4.241 9 C 0.134 3.866 10 N -0.318 5.318 11 C -0.045 4.045 12 C 0.099 3.901 13 C -0.573 4.573 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.699 3.301 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.210 4.210 22 C -0.087 4.087 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.327 0.093 -21.547 23.894 hybrid contribution -1.579 -0.558 0.079 1.677 sum 8.747 -0.465 -21.468 23.186 Atomic orbital electron populations 1.21820 0.95789 1.01789 1.02020 1.22302 0.96353 0.98136 1.02150 1.21610 0.94506 0.90666 0.91196 1.60822 1.18339 1.50386 1.00465 1.20697 1.00205 0.93887 0.87009 1.19210 0.95387 1.01849 1.00325 1.20487 0.98251 0.93930 0.94433 1.20568 0.95607 1.05765 1.02203 1.17904 0.92133 0.89686 0.86867 1.46698 1.15141 1.36949 1.33006 1.21485 0.93964 0.90420 0.98631 1.19648 0.79003 0.97040 0.94361 1.21485 0.96454 1.22280 1.17038 0.90579 1.24902 0.98779 0.94702 0.94663 1.69899 1.28043 1.31826 1.23563 0.86911 0.84072 0.80585 0.78542 1.19922 1.20960 1.18997 1.20771 1.01155 0.99193 0.99876 1.20636 0.94731 0.97741 0.95566 1.22272 0.93827 1.00242 0.98851 1.22306 0.97976 0.98516 0.97108 1.22421 0.94409 0.98679 1.00132 1.22414 0.98568 0.98329 0.95531 0.92765 0.92545 0.92469 0.91854 0.91744 0.84060 0.91020 0.94933 0.87325 0.86850 0.94565 0.91317 0.92393 0.95473 0.95530 0.92513 0.85553 0.87513 0.90524 0.92196 0.92201 0.91900 0.92247 0.90960 0.91648 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.14 37.16 0.34 -1.01 16 2 C -0.15 -1.30 4.07 -26.73 -0.11 -1.41 16 3 C 0.11 1.02 0.57 -130.48 -0.07 0.94 16 4 N -0.67 -7.32 5.78 -100.09 -0.58 -7.90 16 5 C 0.11 1.34 4.75 -4.98 -0.02 1.31 16 6 C -0.16 -2.50 5.44 -104.59 -0.57 -3.07 16 7 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 8 C -0.22 -3.79 9.21 -39.38 -0.36 -4.16 16 9 C 0.24 4.81 6.55 -83.79 -0.55 4.26 16 10 N -0.61 -12.86 2.99 -181.01 -0.54 -13.41 16 11 C 0.10 1.71 10.19 59.84 0.61 2.32 16 12 C 0.22 5.21 3.98 -5.19 -0.02 5.19 16 13 C -0.53 -14.85 9.94 -34.44 -0.34 -15.20 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 17 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 21 C -0.19 -3.72 9.21 -39.38 -0.36 -4.08 16 22 C -0.07 -1.13 9.69 -39.61 -0.38 -1.51 16 23 C -0.11 -1.02 5.54 -25.61 -0.14 -1.16 16 24 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 25 C -0.12 -0.98 6.91 -24.73 -0.17 -1.15 16 26 C -0.11 -0.93 5.05 -25.07 -0.13 -1.05 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.54 6.47 -51.93 -0.34 0.20 16 29 H 0.06 0.46 7.29 -51.93 -0.38 0.08 16 30 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 31 H 0.06 0.61 6.81 -51.93 -0.35 0.25 16 32 H 0.34 3.80 7.20 -39.29 -0.28 3.52 16 33 H 0.07 0.85 6.42 -51.93 -0.33 0.52 16 34 H 0.03 0.39 6.12 -51.93 -0.32 0.08 16 35 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.11 1.78 6.14 -52.49 -0.32 1.46 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 40 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 41 H 0.03 0.63 5.62 -51.93 -0.29 0.33 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.13 2.70 6.14 -52.49 -0.32 2.38 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.08 0.78 6.73 -51.93 -0.35 0.43 16 46 H 0.06 0.50 7.67 -51.93 -0.40 0.11 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 52 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -29.50 392.27 -11.05 -40.54 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -9.00 Total: 5.20 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.94 Total: -20.16 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.35 Total: -47.55 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.50 -11.05 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824650142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.044 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds