Wall clock time and date at job start Tue Mar 31 2020 11:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46861 * 2 1 4 4 C 1.52996 * 109.47434 * 120.00196 * 2 1 3 5 5 H 1.09002 * 115.54951 * 274.41880 * 4 2 1 6 6 C 1.53000 * 117.50107 * 128.74668 * 4 2 1 7 7 C 1.53002 * 117.49888 * 60.08906 * 4 2 1 8 8 H 1.08998 * 117.49632 * 359.97438 * 7 4 2 9 9 C 1.52999 * 117.49968 * 215.00840 * 7 4 2 10 10 N 1.46899 * 109.47002 * 174.99730 * 9 7 4 11 11 C 1.46907 * 110.99724 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47055 * 180.02562 * 11 10 9 13 13 C 1.38283 * 119.92425 * 269.73228 * 12 11 10 14 14 C 1.38110 * 120.07389 * 179.72940 * 13 12 11 15 15 C 1.38907 * 119.92234 * 0.53696 * 14 13 12 16 16 N 1.39672 * 120.07385 * 179.75324 * 15 14 13 17 17 C 1.46501 * 120.00101 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99958 * 359.97438 * 16 15 14 19 19 C 1.50697 * 109.47112 * 90.00048 * 18 16 15 20 20 H 1.08001 * 120.00270 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00203 * 179.97438 * 19 18 16 22 22 N 1.31517 * 119.99672 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00167 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46973 * 60.00330 * 23 21 19 25 25 H 1.48503 * 109.47131 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47392 * 300.00228 * 23 21 19 27 27 C 1.38911 * 119.85470 * 359.72960 * 15 14 13 28 28 C 1.38104 * 119.92038 * 0.02562 * 27 15 14 29 29 H 1.08994 * 109.47375 * 299.99791 * 1 2 3 30 30 H 1.09002 * 109.47404 * 59.99987 * 1 2 3 31 31 H 1.09005 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46988 * 240.00698 * 2 1 3 33 33 H 1.09003 * 109.46750 * 60.00552 * 3 2 1 34 34 H 1.09004 * 109.46624 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47811 * 300.00013 * 3 2 1 36 36 H 1.09008 * 117.49673 * 359.97438 * 6 4 2 37 37 H 1.08999 * 117.49959 * 144.99502 * 6 4 2 38 38 H 1.09002 * 109.46825 * 294.99320 * 9 7 4 39 39 H 1.08997 * 109.47412 * 54.99052 * 9 7 4 40 40 H 1.00898 * 111.00253 * 56.04616 * 10 9 7 41 41 H 1.09000 * 109.47185 * 300.00152 * 11 10 9 42 42 H 1.08992 * 109.47156 * 59.99882 * 11 10 9 43 43 H 1.08000 * 119.96313 * 359.96751 * 13 12 11 44 44 H 1.07997 * 120.03912 * 180.27302 * 14 13 12 45 45 H 1.08997 * 109.47325 * 90.00169 * 17 16 15 46 46 H 1.09004 * 109.47225 * 209.99622 * 17 16 15 47 47 H 1.09002 * 109.47056 * 329.99493 * 17 16 15 48 48 H 1.09004 * 109.47215 * 209.99718 * 18 16 15 49 49 H 1.08994 * 109.47168 * 330.00014 * 18 16 15 50 50 H 0.96997 * 119.99811 * 180.02562 * 22 21 19 51 51 H 1.07998 * 120.03976 * 179.97438 * 27 15 14 52 52 H 1.08006 * 119.95781 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1253 -0.1064 2.1451 6 6 3.0763 -1.8293 1.0515 7 6 1.6375 -2.1859 1.4331 8 1 1.0090 -2.6354 0.6644 9 6 1.3854 -2.6753 2.8606 10 7 0.8975 -4.0604 2.8243 11 6 0.6446 -4.5651 4.1806 12 6 0.1471 -5.9855 4.1034 13 6 -1.2095 -6.2373 4.0115 14 6 -1.6685 -7.5376 3.9349 15 6 -0.7663 -8.5936 3.9615 16 7 -1.2274 -9.9100 3.8894 17 6 -0.2745 -11.0224 3.9170 18 6 -2.6639 -10.1785 3.7862 19 6 -3.0630 -10.2256 2.3338 20 1 -2.3208 -10.0716 1.5645 21 6 -4.3756 -10.4666 1.9869 22 7 -5.2793 -10.6547 2.9237 23 14 -4.8704 -10.5244 0.1866 24 1 -4.1142 -11.6022 -0.5002 25 1 -6.3265 -10.7966 0.0820 26 1 -4.5640 -9.2197 -0.4531 27 6 0.5954 -8.3373 4.0594 28 6 1.0478 -7.0344 4.1305 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 3.3944 -2.0448 0.0314 37 1 3.8435 -1.9434 1.8174 38 1 2.3146 -2.6322 3.4289 39 1 0.6388 -2.0394 3.3363 40 1 1.5431 -4.6585 2.3309 41 1 1.5688 -4.5351 4.7577 42 1 -0.1070 -3.9424 4.6657 43 1 -1.9107 -5.4160 3.9957 44 1 -2.7278 -7.7335 3.8587 45 1 -0.1057 -11.3308 4.9487 46 1 -0.6778 -11.8606 3.3487 47 1 0.6691 -10.7037 3.4740 48 1 -2.8894 -11.1358 4.2562 49 1 -3.2186 -9.3868 4.2898 50 1 -6.2026 -10.8246 2.6797 51 1 1.2994 -9.1560 4.0808 52 1 2.1065 -6.8345 4.2063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824977696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:48 Heat of formation + Delta-G solvation = 37.210411 kcal Electronic energy + Delta-G solvation = -25396.639340 eV Core-core repulsion = 21974.884941 eV Total energy + Delta-G solvation = -3421.754399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.14460 -38.80792 -36.47510 -35.05201 -33.44620 -32.64110 -30.42070 -30.03456 -27.79333 -27.43557 -26.76331 -24.89352 -23.59692 -23.13862 -22.00177 -21.52054 -20.83449 -20.00287 -19.50456 -16.75617 -16.45929 -16.12797 -15.50209 -15.28130 -14.81955 -14.60084 -14.42356 -14.25736 -14.00249 -13.69895 -13.51189 -13.34580 -13.15734 -12.87971 -12.82726 -12.58844 -12.43221 -12.13756 -11.86735 -11.80534 -11.53534 -11.42502 -11.37707 -11.32265 -11.22578 -10.97488 -10.89092 -10.68356 -10.65604 -10.24735 -10.11603 -9.94424 -9.88549 -9.73239 -8.84081 -8.48812 -8.35330 -8.23891 -6.45167 -6.00252 -4.15832 2.13510 2.23488 3.29749 3.33928 3.37692 3.51892 4.05799 4.17066 4.42169 4.43849 4.59072 4.63171 4.76926 4.86269 5.01313 5.07982 5.22223 5.23005 5.31047 5.31768 5.35065 5.40722 5.47041 5.55970 5.59036 5.60227 5.61671 5.65382 5.72389 5.78839 5.81285 5.85884 5.91259 6.02847 6.04344 6.09789 6.10594 6.20379 6.28977 6.41552 6.46036 6.65926 6.93918 7.01821 7.11152 7.20209 7.28748 7.39027 7.46730 7.62717 7.82451 8.16911 8.28220 8.50261 8.92841 9.50870 10.97121 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.002390 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.490693 B =11714.362120 C =13219.763421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.141 4.141 5 H 0.101 0.899 6 C -0.181 4.181 7 C -0.142 4.142 8 H 0.114 0.886 9 C 0.090 3.910 10 N -0.682 5.682 11 C 0.116 3.884 12 C -0.173 4.173 13 C -0.051 4.051 14 C -0.188 4.188 15 C 0.241 3.759 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.531 4.531 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.222 4.222 28 C -0.068 4.068 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.342 0.658 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.132 0.868 45 H 0.035 0.965 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.112 0.888 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.574 17.886 -0.498 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.160 4.160 5 H 0.119 0.881 6 C -0.217 4.217 7 C -0.160 4.160 8 H 0.132 0.868 9 C -0.040 4.040 10 N -0.313 5.313 11 C -0.012 4.012 12 C -0.176 4.176 13 C -0.070 4.070 14 C -0.211 4.211 15 C 0.134 3.866 16 N -0.321 5.321 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.570 4.570 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.245 4.245 28 C -0.088 4.088 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.160 0.840 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.149 0.851 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.074 0.926 51 H 0.130 0.870 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.618 17.787 -0.571 23.030 hybrid contribution 0.565 -0.328 -0.754 0.997 sum 15.183 17.459 -1.325 23.175 Atomic orbital electron populations 1.21820 0.94750 1.02329 1.01473 1.20697 0.95890 0.95732 0.96121 1.21809 1.00905 0.95759 1.01664 1.22431 1.03339 0.90677 0.99564 0.88084 1.23224 0.92494 1.03576 1.02453 1.22430 0.97657 0.97317 0.98591 0.86847 1.21500 0.97858 0.90711 0.93885 1.60528 1.51342 1.02225 1.17246 1.20637 0.98629 0.93100 0.88822 1.19164 0.93677 0.93314 1.11404 1.20644 0.94397 0.95724 0.96243 1.20901 1.00241 0.91336 1.08575 1.17961 0.92135 0.85400 0.91077 1.47099 1.08060 1.01348 1.75603 1.21468 0.92935 0.90445 0.99720 1.19284 0.73983 0.97028 0.96792 1.21537 0.93897 1.49114 0.92448 0.92319 1.24965 0.96352 0.95041 0.97733 1.69921 1.02493 1.48513 1.32501 0.86576 0.77284 0.78745 0.84979 1.20276 1.21204 1.20030 1.20512 0.93766 0.96655 1.13593 1.20501 0.97722 0.92068 0.98484 0.92662 0.92943 0.92136 0.91331 0.92705 0.92758 0.92746 0.88959 0.89176 0.95639 0.90911 0.83974 0.95549 0.91065 0.87032 0.85070 0.94652 0.91466 0.92720 0.95226 0.94600 0.92605 0.86974 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.03 37.15 0.34 -0.83 16 2 C -0.07 -0.50 3.07 -90.62 -0.28 -0.78 16 3 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 4 C -0.14 -1.13 4.87 -90.62 -0.44 -1.57 16 5 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 6 C -0.18 -1.46 9.83 -26.70 -0.26 -1.72 16 7 C -0.14 -1.31 5.16 -90.58 -0.47 -1.77 16 8 H 0.11 1.20 7.61 -51.93 -0.40 0.80 16 9 C 0.09 0.90 5.97 -3.83 -0.02 0.87 16 10 N -0.68 -8.27 6.49 -115.06 -0.75 -9.02 16 11 C 0.12 1.47 5.81 -4.97 -0.03 1.45 16 12 C -0.17 -2.69 5.39 -104.59 -0.56 -3.26 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 14 C -0.19 -3.87 9.21 -39.38 -0.36 -4.23 16 15 C 0.24 4.94 6.55 -83.79 -0.55 4.39 16 16 N -0.62 -13.28 2.99 -181.00 -0.54 -13.83 16 17 C 0.10 1.74 10.19 59.85 0.61 2.35 16 18 C 0.25 6.28 4.91 -5.19 -0.03 6.26 16 19 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 23 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 28 C -0.07 -1.06 9.69 -39.61 -0.38 -1.45 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.54 7.29 -51.93 -0.38 0.16 16 32 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.72 8.05 -51.92 -0.42 0.30 16 37 H 0.09 0.69 8.03 -51.93 -0.42 0.28 16 38 H 0.03 0.24 7.88 -51.93 -0.41 -0.17 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.34 4.13 8.72 -39.29 -0.34 3.79 16 41 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 42 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.13 2.97 6.14 -52.49 -0.32 2.65 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.96 6.20 -51.93 -0.32 0.63 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 52 H 0.10 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 416.04 15.07 6.27 6.27 Total: -1.00 -28.45 416.04 -12.08 -40.53 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -9.51 Total: 4.34 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -3.27 Total: -19.72 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.55 Total: -47.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -28.45 -12.08 -40.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824977696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.740 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds