Wall clock time and date at job start Tue Mar 31 2020 11:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46861 * 2 1 4 4 C 1.52996 * 109.47434 * 120.00196 * 2 1 3 5 5 H 1.09002 * 115.54951 * 274.41880 * 4 2 1 6 6 C 1.53000 * 117.50107 * 128.74668 * 4 2 1 7 7 C 1.53002 * 117.49888 * 60.08906 * 4 2 1 8 8 H 1.08998 * 117.49632 * 359.97438 * 7 4 2 9 9 C 1.52999 * 117.49968 * 215.00840 * 7 4 2 10 10 N 1.46899 * 109.47002 * 174.99730 * 9 7 4 11 11 C 1.46907 * 110.99724 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47055 * 180.02562 * 11 10 9 13 13 C 1.38283 * 119.92425 * 269.73228 * 12 11 10 14 14 C 1.38110 * 120.07389 * 179.72940 * 13 12 11 15 15 C 1.38907 * 119.92234 * 0.53696 * 14 13 12 16 16 N 1.39672 * 120.07385 * 179.75324 * 15 14 13 17 17 C 1.46501 * 120.00101 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99958 * 359.97438 * 16 15 14 19 19 C 1.50697 * 109.47112 * 90.00048 * 18 16 15 20 20 H 1.08001 * 120.00270 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00203 * 179.97438 * 19 18 16 22 22 N 1.31517 * 119.99672 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00167 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46973 * 60.00330 * 23 21 19 25 25 H 1.48503 * 109.47131 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47392 * 300.00228 * 23 21 19 27 27 C 1.38911 * 119.85470 * 359.72960 * 15 14 13 28 28 C 1.38104 * 119.92038 * 0.02562 * 27 15 14 29 29 H 1.08994 * 109.47375 * 299.99791 * 1 2 3 30 30 H 1.09002 * 109.47404 * 59.99987 * 1 2 3 31 31 H 1.09005 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46988 * 240.00698 * 2 1 3 33 33 H 1.09003 * 109.46750 * 60.00552 * 3 2 1 34 34 H 1.09004 * 109.46624 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47811 * 300.00013 * 3 2 1 36 36 H 1.09008 * 117.49673 * 359.97438 * 6 4 2 37 37 H 1.08999 * 117.49959 * 144.99502 * 6 4 2 38 38 H 1.09002 * 109.46825 * 294.99320 * 9 7 4 39 39 H 1.08997 * 109.47412 * 54.99052 * 9 7 4 40 40 H 1.00898 * 111.00253 * 56.04616 * 10 9 7 41 41 H 1.09000 * 109.47185 * 300.00152 * 11 10 9 42 42 H 1.08992 * 109.47156 * 59.99882 * 11 10 9 43 43 H 1.08000 * 119.96313 * 359.96751 * 13 12 11 44 44 H 1.07997 * 120.03912 * 180.27302 * 14 13 12 45 45 H 1.08997 * 109.47325 * 90.00169 * 17 16 15 46 46 H 1.09004 * 109.47225 * 209.99622 * 17 16 15 47 47 H 1.09002 * 109.47056 * 329.99493 * 17 16 15 48 48 H 1.09004 * 109.47215 * 209.99718 * 18 16 15 49 49 H 1.08994 * 109.47168 * 330.00014 * 18 16 15 50 50 H 0.96997 * 119.99811 * 180.02562 * 22 21 19 51 51 H 1.07998 * 120.03976 * 179.97438 * 27 15 14 52 52 H 1.08006 * 119.95781 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1253 -0.1064 2.1451 6 6 3.0763 -1.8293 1.0515 7 6 1.6375 -2.1859 1.4331 8 1 1.0090 -2.6354 0.6644 9 6 1.3854 -2.6753 2.8606 10 7 0.8975 -4.0604 2.8243 11 6 0.6446 -4.5651 4.1806 12 6 0.1471 -5.9855 4.1034 13 6 -1.2095 -6.2373 4.0115 14 6 -1.6685 -7.5376 3.9349 15 6 -0.7663 -8.5936 3.9615 16 7 -1.2274 -9.9100 3.8894 17 6 -0.2745 -11.0224 3.9170 18 6 -2.6639 -10.1785 3.7862 19 6 -3.0630 -10.2256 2.3338 20 1 -2.3208 -10.0716 1.5645 21 6 -4.3756 -10.4666 1.9869 22 7 -5.2793 -10.6547 2.9237 23 14 -4.8704 -10.5244 0.1866 24 1 -4.1142 -11.6022 -0.5002 25 1 -6.3265 -10.7966 0.0820 26 1 -4.5640 -9.2197 -0.4531 27 6 0.5954 -8.3373 4.0594 28 6 1.0478 -7.0344 4.1305 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 3.3944 -2.0448 0.0314 37 1 3.8435 -1.9434 1.8174 38 1 2.3146 -2.6322 3.4289 39 1 0.6388 -2.0394 3.3363 40 1 1.5431 -4.6585 2.3309 41 1 1.5688 -4.5351 4.7577 42 1 -0.1070 -3.9424 4.6657 43 1 -1.9107 -5.4160 3.9957 44 1 -2.7278 -7.7335 3.8587 45 1 -0.1057 -11.3308 4.9487 46 1 -0.6778 -11.8606 3.3487 47 1 0.6691 -10.7037 3.4740 48 1 -2.8894 -11.1358 4.2562 49 1 -3.2186 -9.3868 4.2898 50 1 -6.2026 -10.8246 2.6797 51 1 1.2994 -9.1560 4.0808 52 1 2.1065 -6.8345 4.2063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824977696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:47 Heat of formation + Delta-G solvation = 24.128910 kcal Electronic energy + Delta-G solvation = -25397.206596 eV Core-core repulsion = 21974.884941 eV Total energy + Delta-G solvation = -3422.321655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46498 -39.59374 -37.77612 -36.21292 -34.77223 -34.09555 -31.87917 -31.32150 -29.62119 -28.08423 -27.82884 -26.38998 -25.01072 -23.74855 -23.42330 -22.99494 -21.59342 -20.98657 -20.57699 -18.63290 -18.14134 -17.15228 -16.88439 -16.25257 -16.13425 -15.80674 -15.54269 -15.37392 -15.12677 -15.12092 -14.54484 -14.47191 -14.28920 -14.05209 -13.94079 -13.77822 -13.43646 -13.21607 -13.12572 -13.03263 -13.00138 -12.79855 -12.66903 -12.52530 -12.29062 -12.15157 -12.11080 -11.95142 -11.86489 -11.75066 -11.48942 -11.40441 -10.78199 -10.64261 -10.61524 -10.39231 -9.66046 -9.25577 -8.35872 -7.79690 -6.37144 0.71944 0.84401 1.36770 1.39262 1.47232 2.34393 2.63948 2.83835 3.04389 3.06378 3.43791 3.79471 3.96603 4.05271 4.09493 4.13089 4.20627 4.23720 4.37997 4.43351 4.46767 4.48723 4.54764 4.66347 4.72379 4.72951 4.75649 4.77321 4.84904 4.87603 4.91234 4.93044 4.98769 5.02417 5.02547 5.07500 5.13190 5.21225 5.23965 5.32342 5.33641 5.37372 5.46319 5.57219 5.59756 5.66761 5.70363 5.94268 6.07376 6.16566 6.25365 6.50510 6.54186 6.82840 6.94441 7.34448 8.83253 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.002390 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.490693 B =11714.362120 C =13219.763421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C -0.141 4.141 4 C -0.135 4.135 5 H 0.107 0.893 6 C -0.173 4.173 7 C -0.151 4.151 8 H 0.096 0.904 9 C 0.096 3.904 10 N -0.695 5.695 11 C 0.121 3.879 12 C -0.159 4.159 13 C -0.057 4.057 14 C -0.217 4.217 15 C 0.212 3.788 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.266 3.734 19 C -0.541 4.541 20 H 0.048 0.952 21 C 0.011 3.989 22 N -0.926 5.926 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.274 1.274 27 C -0.216 4.216 28 C -0.061 4.061 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.343 0.657 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.010 0.990 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.134 0.866 52 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.366 19.509 -1.089 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.199 4.199 4 C -0.154 4.154 5 H 0.125 0.875 6 C -0.210 4.210 7 C -0.170 4.170 8 H 0.114 0.886 9 C -0.033 4.033 10 N -0.327 5.327 11 C -0.007 4.007 12 C -0.162 4.162 13 C -0.076 4.076 14 C -0.240 4.240 15 C 0.107 3.893 16 N -0.339 5.339 17 C -0.045 4.045 18 C 0.144 3.856 19 C -0.580 4.580 20 H 0.067 0.933 21 C -0.188 4.188 22 N -0.566 5.566 23 Si 0.786 3.214 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.199 1.199 27 C -0.239 4.239 28 C -0.080 4.080 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.161 0.839 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.152 0.848 52 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.446 19.430 -1.156 26.139 hybrid contribution -0.236 -0.710 -0.535 0.920 sum 17.211 18.720 -1.692 25.485 Atomic orbital electron populations 1.21805 0.95228 1.01462 1.01771 1.20707 0.95463 0.96471 0.95850 1.21784 1.01148 0.94898 1.02032 1.22473 1.02866 0.90159 0.99881 0.87521 1.23265 0.91970 1.02918 1.02823 1.22294 0.98488 0.98398 0.97803 0.88575 1.21466 0.98171 0.89288 0.94385 1.60465 1.52069 1.03293 1.16848 1.20594 0.99566 0.90962 0.89559 1.19518 0.92609 0.95361 1.08684 1.20788 0.95979 0.94631 0.96212 1.20781 0.98692 0.93196 1.11343 1.18234 0.93571 0.84648 0.92849 1.46956 1.06845 1.02906 1.77241 1.21603 0.92895 0.89082 1.00908 1.18771 0.76688 0.94856 0.95258 1.21737 0.94011 1.48961 0.93261 0.93336 1.25792 0.96326 0.94608 1.02054 1.70031 1.02818 1.49235 1.34508 0.85561 0.77288 0.78795 0.79765 1.19289 1.20329 1.19948 1.20787 0.92442 0.98376 1.12313 1.20923 0.99628 0.90967 0.96480 0.92649 0.92386 0.93546 0.91655 0.92460 0.92329 0.92304 0.88772 0.88320 0.94417 0.91216 0.83860 0.93398 0.90825 0.86305 0.88834 0.92905 0.92567 0.90289 0.97241 0.97170 0.92391 0.84847 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.03 71.98 0.65 -1.53 16 2 C -0.07 -0.90 3.07 -10.80 -0.03 -0.94 16 3 C -0.14 -1.57 9.18 71.98 0.66 -0.91 16 4 C -0.14 -1.90 4.87 -10.79 -0.05 -1.95 16 5 H 0.11 1.40 8.11 -2.39 -0.02 1.38 16 6 C -0.17 -2.40 9.83 30.62 0.30 -2.10 16 7 C -0.15 -2.55 5.16 -10.77 -0.06 -2.60 16 8 H 0.10 1.98 7.61 -2.39 -0.02 1.96 16 9 C 0.10 1.68 5.97 86.30 0.51 2.20 16 10 N -0.70 -15.22 6.49 -517.93 -3.36 -18.58 16 11 C 0.12 2.72 5.81 85.56 0.50 3.21 16 12 C -0.16 -4.62 5.39 -19.84 -0.11 -4.73 16 13 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 14 C -0.22 -9.37 9.21 22.40 0.21 -9.16 16 15 C 0.21 8.79 6.55 38.21 0.25 9.04 16 16 N -0.63 -28.08 2.99 -726.56 -2.17 -30.26 16 17 C 0.10 3.44 10.19 127.77 1.30 4.74 16 18 C 0.27 14.23 4.91 85.63 0.42 14.65 16 19 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 20 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 21 C 0.01 0.65 5.46 84.66 0.46 1.11 16 22 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 23 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 27 C -0.22 -7.14 9.21 22.40 0.21 -6.93 16 28 C -0.06 -1.70 9.69 22.25 0.22 -1.48 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.82 7.29 -2.38 -0.02 0.80 16 32 H 0.07 0.93 7.90 -2.39 -0.02 0.91 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 1.28 8.05 -2.38 -0.02 1.26 16 37 H 0.10 1.22 8.03 -2.39 -0.02 1.20 16 38 H 0.04 0.59 7.88 -2.39 -0.02 0.57 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.34 7.37 8.72 -89.70 -0.78 6.59 16 41 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16 42 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 43 H 0.12 3.91 8.06 -2.91 -0.02 3.88 16 44 H 0.09 4.66 6.14 -2.91 -0.02 4.64 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 47 H 0.08 2.33 6.20 -2.39 -0.01 2.32 16 48 H 0.01 0.54 8.07 -2.38 -0.02 0.52 16 49 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16 50 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 51 H 0.13 3.78 6.14 -2.91 -0.02 3.76 16 52 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -63.51 416.04 2.76 -60.75 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.09 Total: 25.93 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 5.89 Total: -29.86 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -5.25 Total: -103.67 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.51 2.76 -60.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824977696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.883 kcal (2) G-P(sol) polarization free energy of solvation -63.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds