Wall clock time and date at job start Tue Mar 31 2020 11:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46902 * 2 1 4 4 C 1.46504 * 120.00242 * 269.99510 * 3 2 1 5 5 C 1.52994 * 109.47265 * 270.00587 * 4 3 2 6 6 C 1.39678 * 119.99899 * 90.00558 * 3 2 1 7 7 C 1.38908 * 120.07437 * 179.97438 * 6 3 2 8 8 C 1.38104 * 119.92523 * 179.97438 * 7 6 3 9 9 C 1.38289 * 120.07398 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.92735 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47095 * 89.99354 * 10 9 8 12 12 C 1.46843 * 111.00190 * 293.95517 * 11 10 9 13 13 C 1.53040 * 109.52392 * 185.84009 * 12 11 10 14 14 C 1.53115 * 109.27691 * 300.82256 * 13 12 11 15 15 C 1.53119 * 109.16284 * 57.65464 * 14 13 12 16 16 H 1.09002 * 109.50244 * 62.28522 * 15 14 13 17 17 C 1.50700 * 109.50255 * 182.36459 * 15 14 13 18 18 H 1.08003 * 119.99676 * 119.92481 * 17 15 14 19 19 C 1.37873 * 120.00277 * 299.91902 * 17 15 14 20 20 N 1.31518 * 119.99802 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00113 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47255 * 60.00176 * 21 19 17 23 23 H 1.48500 * 109.47130 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47287 * 299.99855 * 21 19 17 25 25 C 1.46846 * 110.99745 * 58.16785 * 11 10 9 26 26 C 1.38285 * 120.15072 * 0.26326 * 9 8 7 27 27 C 1.38110 * 120.07125 * 359.45929 * 26 9 8 28 28 H 1.09004 * 109.46926 * 300.00265 * 1 2 3 29 29 H 1.09001 * 109.46931 * 59.99384 * 1 2 3 30 30 H 1.08992 * 109.47551 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46862 * 240.00271 * 2 1 3 32 32 H 1.08994 * 109.46962 * 120.00254 * 2 1 3 33 33 H 1.09003 * 109.46585 * 30.00917 * 4 3 2 34 34 H 1.08998 * 109.46581 * 150.00712 * 4 3 2 35 35 H 1.08999 * 109.46874 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47132 * 299.99845 * 5 4 3 37 37 H 1.09003 * 109.47207 * 59.99774 * 5 4 3 38 38 H 1.07994 * 120.03807 * 359.95770 * 7 6 3 39 39 H 1.07997 * 119.96462 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.47030 * 329.99670 * 10 9 8 41 41 H 1.08998 * 109.47135 * 209.99764 * 10 9 8 42 42 H 1.08997 * 109.46271 * 65.82450 * 12 11 10 43 43 H 1.08996 * 109.46613 * 305.85583 * 12 11 10 44 44 H 1.09001 * 109.50523 * 180.88031 * 13 12 11 45 45 H 1.08999 * 109.50216 * 60.76494 * 13 12 11 46 46 H 1.09003 * 109.52471 * 297.74888 * 14 13 12 47 47 H 1.08999 * 109.57685 * 177.59259 * 14 13 12 48 48 H 0.97001 * 120.00053 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.46322 * 54.14706 * 25 11 10 50 50 H 1.08991 * 109.46240 * 294.17139 * 25 11 10 51 51 H 1.07996 * 119.96638 * 179.70430 * 26 9 8 52 52 H 1.08004 * 120.03455 * 180.26995 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2512 2.0396 1.2097 7 6 2.7147 3.3491 1.2115 8 6 2.9434 3.9973 2.4093 9 6 2.7120 3.3440 3.6060 10 6 2.9632 4.0543 4.9111 11 7 1.7393 4.7474 5.3350 12 6 1.4006 5.8330 4.4059 13 6 0.2096 6.6223 4.9541 14 6 -0.9854 5.6804 5.1252 15 6 -0.5910 4.5326 6.0588 16 1 -0.3403 4.9325 7.0413 17 6 -1.7431 3.5696 6.1866 18 1 -1.6216 2.5394 5.8859 19 6 -2.9521 4.0035 6.6875 20 7 -3.1001 5.2581 7.0534 21 14 -4.3799 2.8095 6.8466 22 1 -3.9957 1.6961 7.7510 23 1 -5.5578 3.5185 7.4079 24 1 -4.7210 2.2646 5.5080 25 6 0.6232 3.8039 5.4786 26 6 2.2563 2.0384 3.6078 27 6 2.0200 1.3863 2.4135 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0284 34 1 2.0957 3.1411 -1.1383 35 1 3.8893 2.3457 -2.6541 36 1 4.3883 2.2155 -0.9507 37 1 3.8745 0.7622 -1.8407 38 1 2.8962 3.8596 0.2773 39 1 3.3041 5.0152 2.4115 40 1 3.7655 4.7807 4.7809 41 1 3.2509 3.3276 5.6708 42 1 1.1413 5.4120 3.4346 43 1 2.2574 6.4978 4.2964 44 1 -0.0514 7.4183 4.2567 45 1 0.4729 7.0551 5.9191 46 1 -1.2736 5.2775 4.1542 47 1 -1.8237 6.2283 5.5555 48 1 -3.9508 5.5635 7.4055 49 1 0.9154 2.9950 6.1483 50 1 0.3675 3.3925 4.5023 51 1 2.0811 1.5295 4.5441 52 1 1.6600 0.3680 2.4157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:11 Heat of formation + Delta-G solvation = 22.985408 kcal Electronic energy + Delta-G solvation = -27545.909283 eV Core-core repulsion = 24123.538042 eV Total energy + Delta-G solvation = -3422.371241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91693 -38.32939 -36.53292 -33.76219 -32.66207 -32.05009 -30.56099 -30.37206 -29.65753 -28.07370 -25.37354 -24.89079 -24.15317 -22.71267 -22.10160 -21.29971 -20.94565 -19.88071 -18.45992 -17.40567 -16.31594 -16.18653 -15.32454 -14.85292 -14.79147 -14.60157 -14.21286 -14.15536 -13.94667 -13.65138 -13.47036 -13.33366 -13.00924 -12.76198 -12.53961 -12.40309 -12.28511 -12.15684 -12.00428 -11.92929 -11.56572 -11.32637 -11.21704 -11.11391 -11.10623 -10.87847 -10.63662 -10.54765 -10.43805 -10.00016 -9.74153 -9.65287 -9.35376 -8.92097 -8.65084 -8.60798 -8.22547 -7.55635 -7.10556 -5.90204 -3.95773 1.68290 1.79807 3.04307 3.36016 3.40450 3.42986 4.06904 4.48139 4.65802 4.73767 4.82415 4.93050 5.04650 5.12882 5.19695 5.21654 5.25765 5.33277 5.36721 5.39627 5.52797 5.56136 5.63332 5.66923 5.72031 5.81115 5.88350 5.93522 5.95914 6.01137 6.11910 6.19148 6.23421 6.25881 6.39924 6.47862 6.58607 6.62715 6.64626 6.84318 6.88885 6.98943 7.06109 7.10373 7.31068 7.33092 7.50827 7.59860 7.79665 7.83761 7.95513 8.18594 8.26782 8.57711 9.08220 9.67802 11.15771 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.003889 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.516733 B = 7198.898082 C = 8547.642936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.122 3.878 3 N -0.631 5.631 4 C 0.121 3.879 5 C -0.171 4.171 6 C 0.212 3.788 7 C -0.200 4.200 8 C -0.063 4.063 9 C -0.166 4.166 10 C 0.097 3.903 11 N -0.529 5.529 12 C 0.062 3.938 13 C -0.118 4.118 14 C -0.109 4.109 15 C 0.055 3.945 16 H 0.032 0.968 17 C -0.511 4.511 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.068 3.932 26 C -0.055 4.055 27 C -0.196 4.196 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.059 0.941 46 H 0.027 0.973 47 H 0.089 0.911 48 H 0.259 0.741 49 H 0.054 0.946 50 H 0.027 0.973 51 H 0.119 0.881 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.137 -6.232 -15.695 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.001 4.001 3 N -0.343 5.343 4 C -0.003 4.003 5 C -0.230 4.230 6 C 0.112 3.888 7 C -0.222 4.222 8 C -0.083 4.083 9 C -0.170 4.170 10 C -0.031 4.031 11 N -0.251 5.251 12 C -0.066 4.066 13 C -0.156 4.156 14 C -0.147 4.147 15 C 0.036 3.964 16 H 0.050 0.950 17 C -0.550 4.550 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.059 4.059 26 C -0.074 4.074 27 C -0.218 4.218 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.107 0.893 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.045 0.955 51 H 0.137 0.863 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.048 -5.968 -15.290 20.967 hybrid contribution -1.116 -1.036 -0.863 1.750 sum 11.932 -7.003 -16.153 21.268 Atomic orbital electron populations 1.22246 0.96404 1.01847 1.02801 1.21321 0.93990 0.82636 1.02195 1.46543 1.72014 1.13044 1.02740 1.21313 0.95927 0.97822 0.85224 1.22227 0.97643 1.01868 1.01238 1.17746 0.94049 0.91481 0.85508 1.20568 1.09304 0.94093 0.98213 1.20747 0.97422 0.98586 0.91524 1.20483 1.04728 0.95248 0.96522 1.21146 0.93817 0.96588 0.91561 1.62420 1.04412 1.11774 1.46481 1.22034 0.97566 0.93125 0.93915 1.21678 0.96166 0.97812 0.99909 1.21624 0.96871 0.97589 0.98619 1.18657 0.90135 0.92800 0.94807 0.95017 1.21119 0.96272 0.95778 1.41838 0.93020 1.24922 0.98457 0.95034 0.95407 1.69887 1.24882 1.14669 1.43390 0.86726 0.82078 0.81300 0.78271 1.20328 1.21356 1.20462 1.22298 0.90977 0.93928 0.98702 1.20840 0.95429 0.93923 0.97225 1.20633 1.09334 1.00628 0.91174 0.91839 0.92728 0.91968 0.91354 0.90768 0.91250 0.90767 0.92048 0.92233 0.92742 0.86619 0.86725 0.91184 0.90748 0.95273 0.92850 0.93790 0.92256 0.95366 0.89287 0.93104 0.92779 0.95498 0.86301 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.12 1.13 5.88 -4.04 -0.02 1.11 16 3 N -0.63 -6.91 2.61 -171.75 -0.45 -7.36 16 4 C 0.12 1.07 5.88 -4.04 -0.02 1.04 16 5 C -0.17 -1.32 10.24 37.15 0.38 -0.94 16 6 C 0.21 2.86 6.55 -83.79 -0.55 2.31 16 7 C -0.20 -2.68 9.21 -39.38 -0.36 -3.04 16 8 C -0.06 -0.90 8.10 -39.61 -0.32 -1.22 16 9 C -0.17 -2.55 4.03 -104.59 -0.42 -2.97 16 10 C 0.10 1.52 5.55 -4.98 -0.03 1.49 16 11 N -0.53 -10.07 4.86 -236.12 -1.15 -11.22 16 12 C 0.06 1.13 4.82 -3.83 -0.02 1.11 16 13 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 14 C -0.11 -2.68 5.03 -26.61 -0.13 -2.81 16 15 C 0.05 1.41 2.26 -91.69 -0.21 1.20 16 16 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.51 -14.33 8.56 -34.44 -0.29 -14.63 16 18 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.87 11.35 55.43 0.63 -25.24 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.07 1.48 3.77 -3.83 -0.01 1.47 16 26 C -0.05 -0.84 8.02 -39.61 -0.32 -1.16 16 27 C -0.20 -2.78 9.21 -39.38 -0.36 -3.15 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.07 0.69 6.20 -51.93 -0.32 0.37 16 33 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.07 0.68 6.20 -51.93 -0.32 0.36 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 1.34 6.14 -52.49 -0.32 1.02 16 39 H 0.11 1.48 8.03 -52.49 -0.42 1.06 16 40 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 41 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 42 H 0.03 0.55 6.55 -51.93 -0.34 0.21 16 43 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.05 1.17 8.12 -51.93 -0.42 0.75 16 50 H 0.03 0.61 6.48 -51.93 -0.34 0.28 16 51 H 0.12 1.78 8.03 -52.49 -0.42 1.36 16 52 H 0.12 1.51 6.14 -52.48 -0.32 1.18 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -29.70 394.24 -12.03 -41.73 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -9.41 Total: 1.90 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.57 Total: -22.38 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.97 Total: -43.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.70 -12.03 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.714 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds