Wall clock time and date at job start Tue Mar 31 2020 11:48:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46497 * 109.46902 * 2 1
4 4 C 1.46504 * 120.00242 * 269.99510 * 3 2 1
5 5 C 1.52994 * 109.47265 * 270.00587 * 4 3 2
6 6 C 1.39678 * 119.99899 * 90.00558 * 3 2 1
7 7 C 1.38908 * 120.07437 * 179.97438 * 6 3 2
8 8 C 1.38104 * 119.92523 * 179.97438 * 7 6 3
9 9 C 1.38289 * 120.07398 * 0.02562 * 8 7 6
10 10 C 1.50699 * 119.92735 * 179.97438 * 9 8 7
11 11 N 1.46900 * 109.47095 * 89.99354 * 10 9 8
12 12 C 1.46843 * 111.00190 * 293.95517 * 11 10 9
13 13 C 1.53040 * 109.52392 * 185.84009 * 12 11 10
14 14 C 1.53115 * 109.27691 * 300.82256 * 13 12 11
15 15 C 1.53119 * 109.16284 * 57.65464 * 14 13 12
16 16 H 1.09002 * 109.50244 * 62.28522 * 15 14 13
17 17 C 1.50700 * 109.50255 * 182.36459 * 15 14 13
18 18 H 1.08003 * 119.99676 * 119.92481 * 17 15 14
19 19 C 1.37873 * 120.00277 * 299.91902 * 17 15 14
20 20 N 1.31518 * 119.99802 * 0.02562 * 19 17 15
21 21 Si 1.86801 * 120.00113 * 180.02562 * 19 17 15
22 22 H 1.48497 * 109.47255 * 60.00176 * 21 19 17
23 23 H 1.48500 * 109.47130 * 179.97438 * 21 19 17
24 24 H 1.48495 * 109.47287 * 299.99855 * 21 19 17
25 25 C 1.46846 * 110.99745 * 58.16785 * 11 10 9
26 26 C 1.38285 * 120.15072 * 0.26326 * 9 8 7
27 27 C 1.38110 * 120.07125 * 359.45929 * 26 9 8
28 28 H 1.09004 * 109.46926 * 300.00265 * 1 2 3
29 29 H 1.09001 * 109.46931 * 59.99384 * 1 2 3
30 30 H 1.08992 * 109.47551 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.46862 * 240.00271 * 2 1 3
32 32 H 1.08994 * 109.46962 * 120.00254 * 2 1 3
33 33 H 1.09003 * 109.46585 * 30.00917 * 4 3 2
34 34 H 1.08998 * 109.46581 * 150.00712 * 4 3 2
35 35 H 1.08999 * 109.46874 * 180.02562 * 5 4 3
36 36 H 1.08998 * 109.47132 * 299.99845 * 5 4 3
37 37 H 1.09003 * 109.47207 * 59.99774 * 5 4 3
38 38 H 1.07994 * 120.03807 * 359.95770 * 7 6 3
39 39 H 1.07997 * 119.96462 * 179.97438 * 8 7 6
40 40 H 1.09001 * 109.47030 * 329.99670 * 10 9 8
41 41 H 1.08998 * 109.47135 * 209.99764 * 10 9 8
42 42 H 1.08997 * 109.46271 * 65.82450 * 12 11 10
43 43 H 1.08996 * 109.46613 * 305.85583 * 12 11 10
44 44 H 1.09001 * 109.50523 * 180.88031 * 13 12 11
45 45 H 1.08999 * 109.50216 * 60.76494 * 13 12 11
46 46 H 1.09003 * 109.52471 * 297.74888 * 14 13 12
47 47 H 1.08999 * 109.57685 * 177.59259 * 14 13 12
48 48 H 0.97001 * 120.00053 * 179.97438 * 20 19 17
49 49 H 1.08996 * 109.46322 * 54.14706 * 25 11 10
50 50 H 1.08991 * 109.46240 * 294.17139 * 25 11 10
51 51 H 1.07996 * 119.96638 * 179.70430 * 26 9 8
52 52 H 1.08004 * 120.03455 * 180.26995 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2626 2.0719 -1.2687
5 6 3.7075 1.8314 -1.7104
6 6 2.2512 2.0396 1.2097
7 6 2.7147 3.3491 1.2115
8 6 2.9434 3.9973 2.4093
9 6 2.7120 3.3440 3.6060
10 6 2.9632 4.0543 4.9111
11 7 1.7393 4.7474 5.3350
12 6 1.4006 5.8330 4.4059
13 6 0.2096 6.6223 4.9541
14 6 -0.9854 5.6804 5.1252
15 6 -0.5910 4.5326 6.0588
16 1 -0.3403 4.9325 7.0413
17 6 -1.7431 3.5696 6.1866
18 1 -1.6216 2.5394 5.8859
19 6 -2.9521 4.0035 6.6875
20 7 -3.1001 5.2581 7.0534
21 14 -4.3799 2.8095 6.8466
22 1 -3.9957 1.6961 7.7510
23 1 -5.5578 3.5185 7.4079
24 1 -4.7210 2.2646 5.5080
25 6 0.6232 3.8039 5.4786
26 6 2.2563 2.0384 3.6078
27 6 2.0200 1.3863 2.4135
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 1.5817 1.6878 -2.0284
34 1 2.0957 3.1411 -1.1383
35 1 3.8893 2.3457 -2.6541
36 1 4.3883 2.2155 -0.9507
37 1 3.8745 0.7622 -1.8407
38 1 2.8962 3.8596 0.2773
39 1 3.3041 5.0152 2.4115
40 1 3.7655 4.7807 4.7809
41 1 3.2509 3.3276 5.6708
42 1 1.1413 5.4120 3.4346
43 1 2.2574 6.4978 4.2964
44 1 -0.0514 7.4183 4.2567
45 1 0.4729 7.0551 5.9191
46 1 -1.2736 5.2775 4.1542
47 1 -1.8237 6.2283 5.5555
48 1 -3.9508 5.5635 7.4055
49 1 0.9154 2.9950 6.1483
50 1 0.3675 3.3925 4.5023
51 1 2.0811 1.5295 4.5441
52 1 1.6600 0.3680 2.4157
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000826861143.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:11
Heat of formation + Delta-G solvation = 22.985408 kcal
Electronic energy + Delta-G solvation = -27545.909283 eV
Core-core repulsion = 24123.538042 eV
Total energy + Delta-G solvation = -3422.371241 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-39.91693 -38.32939 -36.53292 -33.76219 -32.66207 -32.05009 -30.56099 -30.37206
-29.65753 -28.07370 -25.37354 -24.89079 -24.15317 -22.71267 -22.10160 -21.29971
-20.94565 -19.88071 -18.45992 -17.40567 -16.31594 -16.18653 -15.32454 -14.85292
-14.79147 -14.60157 -14.21286 -14.15536 -13.94667 -13.65138 -13.47036 -13.33366
-13.00924 -12.76198 -12.53961 -12.40309 -12.28511 -12.15684 -12.00428 -11.92929
-11.56572 -11.32637 -11.21704 -11.11391 -11.10623 -10.87847 -10.63662 -10.54765
-10.43805 -10.00016 -9.74153 -9.65287 -9.35376 -8.92097 -8.65084 -8.60798
-8.22547 -7.55635 -7.10556 -5.90204 -3.95773 1.68290 1.79807 3.04307
3.36016 3.40450 3.42986 4.06904 4.48139 4.65802 4.73767 4.82415
4.93050 5.04650 5.12882 5.19695 5.21654 5.25765 5.33277 5.36721
5.39627 5.52797 5.56136 5.63332 5.66923 5.72031 5.81115 5.88350
5.93522 5.95914 6.01137 6.11910 6.19148 6.23421 6.25881 6.39924
6.47862 6.58607 6.62715 6.64626 6.84318 6.88885 6.98943 7.06109
7.10373 7.31068 7.33092 7.50827 7.59860 7.79665 7.83761 7.95513
8.18594 8.26782 8.57711 9.08220 9.67802 11.15771
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.012618 B = 0.003889 C = 0.003275
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2218.516733 B = 7198.898082 C = 8547.642936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.122 3.878
3 N -0.631 5.631
4 C 0.121 3.879
5 C -0.171 4.171
6 C 0.212 3.788
7 C -0.200 4.200
8 C -0.063 4.063
9 C -0.166 4.166
10 C 0.097 3.903
11 N -0.529 5.529
12 C 0.062 3.938
13 C -0.118 4.118
14 C -0.109 4.109
15 C 0.055 3.945
16 H 0.032 0.968
17 C -0.511 4.511
18 H 0.052 0.948
19 C 0.063 3.937
20 N -0.889 5.889
21 Si 0.888 3.112
22 H -0.278 1.278
23 H -0.288 1.288
24 H -0.279 1.279
25 C 0.068 3.932
26 C -0.055 4.055
27 C -0.196 4.196
28 H 0.063 0.937
29 H 0.054 0.946
30 H 0.061 0.939
31 H 0.068 0.932
32 H 0.074 0.926
33 H 0.069 0.931
34 H 0.074 0.926
35 H 0.061 0.939
36 H 0.059 0.941
37 H 0.053 0.947
38 H 0.116 0.884
39 H 0.115 0.885
40 H 0.070 0.930
41 H 0.074 0.926
42 H 0.029 0.971
43 H 0.053 0.947
44 H 0.043 0.957
45 H 0.059 0.941
46 H 0.027 0.973
47 H 0.089 0.911
48 H 0.259 0.741
49 H 0.054 0.946
50 H 0.027 0.973
51 H 0.119 0.881
52 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.137 -6.232 -15.695 21.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.001 4.001
3 N -0.343 5.343
4 C -0.003 4.003
5 C -0.230 4.230
6 C 0.112 3.888
7 C -0.222 4.222
8 C -0.083 4.083
9 C -0.170 4.170
10 C -0.031 4.031
11 N -0.251 5.251
12 C -0.066 4.066
13 C -0.156 4.156
14 C -0.147 4.147
15 C 0.036 3.964
16 H 0.050 0.950
17 C -0.550 4.550
18 H 0.070 0.930
19 C -0.138 4.138
20 N -0.528 5.528
21 Si 0.716 3.284
22 H -0.203 1.203
23 H -0.214 1.214
24 H -0.205 1.205
25 C -0.059 4.059
26 C -0.074 4.074
27 C -0.218 4.218
28 H 0.082 0.918
29 H 0.073 0.927
30 H 0.080 0.920
31 H 0.086 0.914
32 H 0.092 0.908
33 H 0.087 0.913
34 H 0.092 0.908
35 H 0.080 0.920
36 H 0.078 0.922
37 H 0.073 0.927
38 H 0.134 0.866
39 H 0.133 0.867
40 H 0.088 0.912
41 H 0.093 0.907
42 H 0.047 0.953
43 H 0.071 0.929
44 H 0.062 0.938
45 H 0.077 0.923
46 H 0.046 0.954
47 H 0.107 0.893
48 H 0.069 0.931
49 H 0.072 0.928
50 H 0.045 0.955
51 H 0.137 0.863
52 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 13.048 -5.968 -15.290 20.967
hybrid contribution -1.116 -1.036 -0.863 1.750
sum 11.932 -7.003 -16.153 21.268
Atomic orbital electron populations
1.22246 0.96404 1.01847 1.02801 1.21321 0.93990 0.82636 1.02195
1.46543 1.72014 1.13044 1.02740 1.21313 0.95927 0.97822 0.85224
1.22227 0.97643 1.01868 1.01238 1.17746 0.94049 0.91481 0.85508
1.20568 1.09304 0.94093 0.98213 1.20747 0.97422 0.98586 0.91524
1.20483 1.04728 0.95248 0.96522 1.21146 0.93817 0.96588 0.91561
1.62420 1.04412 1.11774 1.46481 1.22034 0.97566 0.93125 0.93915
1.21678 0.96166 0.97812 0.99909 1.21624 0.96871 0.97589 0.98619
1.18657 0.90135 0.92800 0.94807 0.95017 1.21119 0.96272 0.95778
1.41838 0.93020 1.24922 0.98457 0.95034 0.95407 1.69887 1.24882
1.14669 1.43390 0.86726 0.82078 0.81300 0.78271 1.20328 1.21356
1.20462 1.22298 0.90977 0.93928 0.98702 1.20840 0.95429 0.93923
0.97225 1.20633 1.09334 1.00628 0.91174 0.91839 0.92728 0.91968
0.91354 0.90768 0.91250 0.90767 0.92048 0.92233 0.92742 0.86619
0.86725 0.91184 0.90748 0.95273 0.92850 0.93790 0.92256 0.95366
0.89287 0.93104 0.92779 0.95498 0.86301 0.86445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16
2 C 0.12 1.13 5.88 -4.04 -0.02 1.11 16
3 N -0.63 -6.91 2.61 -171.75 -0.45 -7.36 16
4 C 0.12 1.07 5.88 -4.04 -0.02 1.04 16
5 C -0.17 -1.32 10.24 37.15 0.38 -0.94 16
6 C 0.21 2.86 6.55 -83.79 -0.55 2.31 16
7 C -0.20 -2.68 9.21 -39.38 -0.36 -3.04 16
8 C -0.06 -0.90 8.10 -39.61 -0.32 -1.22 16
9 C -0.17 -2.55 4.03 -104.59 -0.42 -2.97 16
10 C 0.10 1.52 5.55 -4.98 -0.03 1.49 16
11 N -0.53 -10.07 4.86 -236.12 -1.15 -11.22 16
12 C 0.06 1.13 4.82 -3.83 -0.02 1.11 16
13 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16
14 C -0.11 -2.68 5.03 -26.61 -0.13 -2.81 16
15 C 0.05 1.41 2.26 -91.69 -0.21 1.20 16
16 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16
17 C -0.51 -14.33 8.56 -34.44 -0.29 -14.63 16
18 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16
19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16
20 N -0.89 -25.87 11.35 55.43 0.63 -25.24 16
21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16
22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
25 C 0.07 1.48 3.77 -3.83 -0.01 1.47 16
26 C -0.05 -0.84 8.02 -39.61 -0.32 -1.16 16
27 C -0.20 -2.78 9.21 -39.38 -0.36 -3.15 16
28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
31 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16
32 H 0.07 0.69 6.20 -51.93 -0.32 0.37 16
33 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16
34 H 0.07 0.68 6.20 -51.93 -0.32 0.36 16
35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.12 1.34 6.14 -52.49 -0.32 1.02 16
39 H 0.11 1.48 8.03 -52.49 -0.42 1.06 16
40 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16
41 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16
42 H 0.03 0.55 6.55 -51.93 -0.34 0.21 16
43 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16
44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
47 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16
48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
49 H 0.05 1.17 8.12 -51.93 -0.42 0.75 16
50 H 0.03 0.61 6.48 -51.93 -0.34 0.28 16
51 H 0.12 1.78 8.03 -52.49 -0.42 1.36 16
52 H 0.12 1.51 6.14 -52.48 -0.32 1.18 16
LS Contribution 394.24 15.07 5.94 5.94
Total: -1.00 -29.70 394.24 -12.03 -41.73
By element:
Atomic # 1 Polarization: 11.31 SS G_CDS: -9.41 Total: 1.90 kcal
Atomic # 6 Polarization: -19.81 SS G_CDS: -2.57 Total: -22.38 kcal
Atomic # 7 Polarization: -42.85 SS G_CDS: -0.97 Total: -43.82 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -29.70 -12.03 -41.73 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000826861143.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.714 kcal
(2) G-P(sol) polarization free energy of solvation -29.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.031 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds