Wall clock time and date at job start Tue Mar 31 2020 11:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46902 * 2 1 4 4 C 1.46504 * 120.00242 * 269.99510 * 3 2 1 5 5 C 1.52994 * 109.47265 * 270.00587 * 4 3 2 6 6 C 1.39678 * 119.99899 * 90.00558 * 3 2 1 7 7 C 1.38908 * 120.07437 * 179.97438 * 6 3 2 8 8 C 1.38104 * 119.92523 * 179.97438 * 7 6 3 9 9 C 1.38289 * 120.07398 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.92735 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47095 * 89.99354 * 10 9 8 12 12 C 1.46843 * 111.00190 * 293.95517 * 11 10 9 13 13 C 1.53040 * 109.52392 * 185.84009 * 12 11 10 14 14 C 1.53115 * 109.27691 * 300.82256 * 13 12 11 15 15 C 1.53119 * 109.16284 * 57.65464 * 14 13 12 16 16 H 1.09002 * 109.50244 * 62.28522 * 15 14 13 17 17 C 1.50700 * 109.50255 * 182.36459 * 15 14 13 18 18 H 1.08003 * 119.99676 * 119.92481 * 17 15 14 19 19 C 1.37873 * 120.00277 * 299.91902 * 17 15 14 20 20 N 1.31518 * 119.99802 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00113 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47255 * 60.00176 * 21 19 17 23 23 H 1.48500 * 109.47130 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47287 * 299.99855 * 21 19 17 25 25 C 1.46846 * 110.99745 * 58.16785 * 11 10 9 26 26 C 1.38285 * 120.15072 * 0.26326 * 9 8 7 27 27 C 1.38110 * 120.07125 * 359.45929 * 26 9 8 28 28 H 1.09004 * 109.46926 * 300.00265 * 1 2 3 29 29 H 1.09001 * 109.46931 * 59.99384 * 1 2 3 30 30 H 1.08992 * 109.47551 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46862 * 240.00271 * 2 1 3 32 32 H 1.08994 * 109.46962 * 120.00254 * 2 1 3 33 33 H 1.09003 * 109.46585 * 30.00917 * 4 3 2 34 34 H 1.08998 * 109.46581 * 150.00712 * 4 3 2 35 35 H 1.08999 * 109.46874 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47132 * 299.99845 * 5 4 3 37 37 H 1.09003 * 109.47207 * 59.99774 * 5 4 3 38 38 H 1.07994 * 120.03807 * 359.95770 * 7 6 3 39 39 H 1.07997 * 119.96462 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.47030 * 329.99670 * 10 9 8 41 41 H 1.08998 * 109.47135 * 209.99764 * 10 9 8 42 42 H 1.08997 * 109.46271 * 65.82450 * 12 11 10 43 43 H 1.08996 * 109.46613 * 305.85583 * 12 11 10 44 44 H 1.09001 * 109.50523 * 180.88031 * 13 12 11 45 45 H 1.08999 * 109.50216 * 60.76494 * 13 12 11 46 46 H 1.09003 * 109.52471 * 297.74888 * 14 13 12 47 47 H 1.08999 * 109.57685 * 177.59259 * 14 13 12 48 48 H 0.97001 * 120.00053 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.46322 * 54.14706 * 25 11 10 50 50 H 1.08991 * 109.46240 * 294.17139 * 25 11 10 51 51 H 1.07996 * 119.96638 * 179.70430 * 26 9 8 52 52 H 1.08004 * 120.03455 * 180.26995 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2512 2.0396 1.2097 7 6 2.7147 3.3491 1.2115 8 6 2.9434 3.9973 2.4093 9 6 2.7120 3.3440 3.6060 10 6 2.9632 4.0543 4.9111 11 7 1.7393 4.7474 5.3350 12 6 1.4006 5.8330 4.4059 13 6 0.2096 6.6223 4.9541 14 6 -0.9854 5.6804 5.1252 15 6 -0.5910 4.5326 6.0588 16 1 -0.3403 4.9325 7.0413 17 6 -1.7431 3.5696 6.1866 18 1 -1.6216 2.5394 5.8859 19 6 -2.9521 4.0035 6.6875 20 7 -3.1001 5.2581 7.0534 21 14 -4.3799 2.8095 6.8466 22 1 -3.9957 1.6961 7.7510 23 1 -5.5578 3.5185 7.4079 24 1 -4.7210 2.2646 5.5080 25 6 0.6232 3.8039 5.4786 26 6 2.2563 2.0384 3.6078 27 6 2.0200 1.3863 2.4135 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0284 34 1 2.0957 3.1411 -1.1383 35 1 3.8893 2.3457 -2.6541 36 1 4.3883 2.2155 -0.9507 37 1 3.8745 0.7622 -1.8407 38 1 2.8962 3.8596 0.2773 39 1 3.3041 5.0152 2.4115 40 1 3.7655 4.7807 4.7809 41 1 3.2509 3.3276 5.6708 42 1 1.1413 5.4120 3.4346 43 1 2.2574 6.4978 4.2964 44 1 -0.0514 7.4183 4.2567 45 1 0.4729 7.0551 5.9191 46 1 -1.2736 5.2775 4.1542 47 1 -1.8237 6.2283 5.5555 48 1 -3.9508 5.5635 7.4055 49 1 0.9154 2.9950 6.1483 50 1 0.3675 3.3925 4.5023 51 1 2.0811 1.5295 4.5441 52 1 1.6600 0.3680 2.4157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:09 Heat of formation + Delta-G solvation = 8.460352 kcal Electronic energy + Delta-G solvation = -27546.539137 eV Core-core repulsion = 24123.538042 eV Total energy + Delta-G solvation = -3423.001095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02971 -39.68199 -37.69300 -35.52974 -33.75838 -33.42100 -31.85108 -31.53737 -31.25911 -29.12161 -26.93384 -26.62412 -24.98596 -23.94797 -23.39653 -22.59777 -22.46381 -20.88338 -20.21273 -18.47259 -18.28446 -17.06611 -16.81633 -16.45932 -15.92398 -15.83671 -15.57024 -15.40975 -15.03721 -14.90721 -14.65632 -14.47262 -14.29647 -14.09199 -13.96246 -13.91203 -13.36551 -13.27493 -13.04633 -12.95622 -12.87448 -12.80945 -12.65384 -12.52543 -12.33910 -12.22532 -12.06386 -11.87298 -11.77535 -11.67623 -11.42896 -11.36517 -10.90310 -10.63970 -10.52642 -10.36178 -9.73760 -9.07371 -8.09837 -8.05404 -6.20541 0.59853 0.70946 1.39808 1.41490 1.49057 2.22505 2.42981 2.95689 3.19714 3.35693 3.88219 3.93807 4.11564 4.15739 4.17029 4.25333 4.27736 4.34008 4.38048 4.48569 4.49489 4.52316 4.53936 4.62248 4.67576 4.72720 4.75674 4.83258 4.91233 4.93625 4.96831 4.97711 4.99702 5.04960 5.07714 5.17610 5.21534 5.23866 5.27507 5.35566 5.41793 5.45569 5.54347 5.56465 5.64382 5.85264 6.01198 6.02185 6.16017 6.25359 6.43942 6.45763 6.50921 6.63267 6.91925 7.46696 8.97855 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.003889 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.516733 B = 7198.898082 C = 8547.642936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.632 5.632 4 C 0.115 3.885 5 C -0.163 4.163 6 C 0.211 3.789 7 C -0.206 4.206 8 C -0.066 4.066 9 C -0.183 4.183 10 C 0.100 3.900 11 N -0.538 5.538 12 C 0.068 3.932 13 C -0.112 4.112 14 C -0.101 4.101 15 C 0.053 3.947 16 H -0.005 1.005 17 C -0.535 4.535 18 H 0.047 0.953 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.952 3.048 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.274 1.274 25 C 0.090 3.910 26 C -0.070 4.070 27 C -0.210 4.210 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.014 0.986 47 H 0.057 0.943 48 H 0.260 0.740 49 H 0.048 0.952 50 H 0.016 0.984 51 H 0.111 0.889 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.172 -6.685 -17.924 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.343 5.343 4 C -0.008 4.008 5 C -0.222 4.222 6 C 0.109 3.891 7 C -0.228 4.228 8 C -0.085 4.085 9 C -0.187 4.187 10 C -0.027 4.027 11 N -0.261 5.261 12 C -0.059 4.059 13 C -0.150 4.150 14 C -0.139 4.139 15 C 0.034 3.966 16 H 0.013 0.987 17 C -0.573 4.573 18 H 0.066 0.934 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.777 3.223 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.199 1.199 25 C -0.037 4.037 26 C -0.090 4.090 27 C -0.232 4.232 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.034 0.966 51 H 0.129 0.871 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.099 -6.436 -17.546 23.411 hybrid contribution -1.432 -0.925 -0.234 1.721 sum 12.667 -7.360 -17.780 23.038 Atomic orbital electron populations 1.22194 0.96738 1.02485 1.01337 1.21456 0.93618 0.82053 1.03287 1.46793 1.71194 1.13606 1.02660 1.21506 0.97134 0.97597 0.84541 1.22147 0.96275 1.02168 1.01572 1.17906 0.93231 0.91726 0.86214 1.20815 1.08995 0.94171 0.98824 1.20955 0.96963 0.99266 0.91296 1.20432 1.06158 0.95367 0.96720 1.21176 0.92467 0.97094 0.91943 1.62353 1.04376 1.11699 1.47624 1.22002 0.97764 0.93030 0.93138 1.21606 0.95305 0.97698 1.00393 1.21420 0.97754 0.97682 0.97048 1.18591 0.91385 0.93178 0.93466 0.98706 1.21478 0.97568 0.96092 1.42198 0.93434 1.25703 1.01004 0.96690 0.95011 1.70032 1.25462 1.16219 1.43767 0.85717 0.78851 0.79271 0.78458 1.19546 1.20726 1.19888 1.21857 0.90669 0.93729 0.97478 1.20915 0.96164 0.94464 0.97436 1.20761 1.09911 1.01172 0.91397 0.94850 0.92477 0.90365 0.88855 0.91051 0.89656 0.91073 0.90284 0.93609 0.92513 0.84774 0.85119 0.88793 0.90645 0.95597 0.89379 0.91475 0.93021 0.96683 0.92490 0.93082 0.93369 0.96559 0.87097 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.24 71.98 0.74 -2.33 16 2 C 0.12 1.99 5.88 86.38 0.51 2.50 16 3 N -0.63 -12.71 2.61 -697.30 -1.82 -14.53 16 4 C 0.11 1.74 5.88 86.38 0.51 2.25 16 5 C -0.16 -2.07 10.24 71.98 0.74 -1.34 16 6 C 0.21 5.45 6.55 38.21 0.25 5.70 16 7 C -0.21 -5.17 9.21 22.40 0.21 -4.96 16 8 C -0.07 -1.75 8.10 22.25 0.18 -1.57 16 9 C -0.18 -5.46 4.03 -19.84 -0.08 -5.54 16 10 C 0.10 3.01 5.55 85.56 0.48 3.49 16 11 N -0.54 -20.18 4.86 -900.96 -4.38 -24.56 16 12 C 0.07 2.40 4.82 86.33 0.42 2.81 16 13 C -0.11 -4.53 6.09 30.65 0.19 -4.34 16 14 C -0.10 -5.10 5.03 30.67 0.15 -4.95 16 15 C 0.05 2.81 2.26 -11.49 -0.03 2.79 16 16 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 17 C -0.53 -30.97 8.56 25.60 0.22 -30.75 16 18 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 19 C 0.01 0.84 5.30 84.65 0.45 1.29 16 20 N -0.92 -54.78 11.35 21.45 0.24 -54.54 16 21 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 25 C 0.09 4.05 3.77 86.33 0.33 4.37 16 26 C -0.07 -2.17 8.02 22.25 0.18 -2.00 16 27 C -0.21 -5.97 9.21 22.40 0.21 -5.76 16 28 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.13 8.07 -2.39 -0.02 1.11 16 32 H 0.07 1.25 6.20 -2.39 -0.01 1.23 16 33 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 34 H 0.07 1.13 6.20 -2.39 -0.01 1.12 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.13 2.79 6.14 -2.91 -0.02 2.77 16 39 H 0.13 2.98 8.03 -2.91 -0.02 2.96 16 40 H 0.09 2.37 8.00 -2.39 -0.02 2.35 16 41 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 42 H 0.03 0.94 6.55 -2.39 -0.02 0.92 16 43 H 0.09 2.53 8.06 -2.39 -0.02 2.51 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.01 0.75 8.14 -2.39 -0.02 0.74 16 47 H 0.06 3.23 6.15 -2.39 -0.01 3.21 16 48 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.05 2.16 8.12 -2.39 -0.02 2.14 16 50 H 0.02 0.76 6.48 -2.39 -0.02 0.74 16 51 H 0.11 3.47 8.03 -2.91 -0.02 3.44 16 52 H 0.12 3.21 6.14 -2.91 -0.02 3.19 16 Total: -1.00 -65.83 394.24 2.57 -63.26 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.86 Total: 21.61 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 5.63 Total: -38.33 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -5.95 Total: -93.62 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.83 2.57 -63.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.723 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds