Wall clock time and date at job start Tue Mar 31 2020 11:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47247 * 2 1 4 4 C 1.46499 * 119.99997 * 270.00574 * 3 2 1 5 5 C 1.52999 * 109.46832 * 269.99716 * 4 3 2 6 6 C 1.39671 * 119.99905 * 89.99779 * 3 2 1 7 7 C 1.38916 * 120.07350 * 180.02562 * 6 3 2 8 8 C 1.38105 * 119.92118 * 180.02562 * 7 6 3 9 9 C 1.38283 * 120.07717 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.92453 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.47317 * 89.99505 * 10 9 8 12 12 C 1.46843 * 111.00178 * 294.21072 * 11 10 9 13 13 C 1.53032 * 109.52571 * 174.15839 * 12 11 10 14 14 C 1.53124 * 109.27716 * 59.18061 * 13 12 11 15 15 C 1.53121 * 109.15774 * 302.34601 * 14 13 12 16 16 H 1.09001 * 109.50746 * 297.71327 * 15 14 13 17 17 C 1.50700 * 109.53632 * 177.61434 * 15 14 13 18 18 H 1.07994 * 120.00332 * 240.18297 * 17 15 14 19 19 C 1.37881 * 119.99887 * 60.17375 * 17 15 14 20 20 N 1.31516 * 120.00056 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99911 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47097 * 60.00587 * 21 19 17 23 23 H 1.48502 * 109.47112 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47537 * 300.00212 * 21 19 17 25 25 C 1.46844 * 110.99951 * 169.99777 * 11 10 9 26 26 C 1.38285 * 120.14977 * 0.02562 * 9 8 7 27 27 C 1.38107 * 120.07577 * 0.02562 * 26 9 8 28 28 H 1.09003 * 109.46584 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47037 * 299.99420 * 1 2 3 30 30 H 1.08999 * 109.47106 * 60.00349 * 1 2 3 31 31 H 1.09007 * 109.47216 * 240.00433 * 2 1 3 32 32 H 1.08998 * 109.47549 * 120.00283 * 2 1 3 33 33 H 1.09005 * 109.47301 * 29.99236 * 4 3 2 34 34 H 1.08996 * 109.47218 * 149.99610 * 4 3 2 35 35 H 1.08996 * 109.47037 * 299.99854 * 5 4 3 36 36 H 1.08996 * 109.47306 * 59.99947 * 5 4 3 37 37 H 1.09007 * 109.46805 * 180.02562 * 5 4 3 38 38 H 1.07995 * 120.03323 * 0.27426 * 7 6 3 39 39 H 1.07995 * 119.95674 * 179.97438 * 8 7 6 40 40 H 1.09005 * 109.47080 * 209.99805 * 10 9 8 41 41 H 1.09000 * 109.46716 * 329.99380 * 10 9 8 42 42 H 1.09003 * 109.46397 * 294.17678 * 12 11 10 43 43 H 1.09001 * 109.46202 * 54.14487 * 12 11 10 44 44 H 1.09006 * 109.50401 * 299.24303 * 13 12 11 45 45 H 1.08999 * 109.54082 * 179.13995 * 13 12 11 46 46 H 1.08997 * 109.52503 * 182.44531 * 14 13 12 47 47 H 1.09001 * 109.57611 * 62.27938 * 14 13 12 48 48 H 0.96996 * 120.00140 * 179.97438 * 20 19 17 49 49 H 1.09005 * 109.46374 * 305.86079 * 25 11 10 50 50 H 1.09006 * 109.45771 * 65.82373 * 25 11 10 51 51 H 1.08001 * 119.96315 * 179.97438 * 26 9 8 52 52 H 1.08001 * 120.03602 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7104 6 6 2.2511 2.0396 1.2096 7 6 2.7137 3.3495 1.2114 8 6 2.9433 3.9974 2.4093 9 6 2.7137 3.3435 3.6059 10 6 2.9648 4.0539 4.9110 11 7 1.7402 4.7450 5.3360 12 6 1.3959 5.8264 4.4041 13 6 0.0434 6.4267 4.7945 14 6 0.1239 6.9667 6.2251 15 6 0.5313 5.8315 7.1685 16 1 -0.2305 5.0522 7.1504 17 6 0.6702 6.3668 8.5704 18 1 1.6182 6.2983 9.0831 19 6 -0.4131 6.9440 9.1984 20 7 -1.5677 7.0271 8.5742 21 14 -0.2411 7.6068 10.9364 22 1 0.7958 8.6696 10.9605 23 1 -1.5402 8.1720 11.3814 24 1 0.1577 6.5054 11.8490 25 6 1.8696 5.2485 6.7093 26 6 2.2543 2.0392 3.6077 27 6 2.0236 1.3850 2.4134 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6877 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 4.3882 2.2156 -0.9508 36 1 3.8744 0.7623 -1.8408 37 1 3.8891 2.3457 -2.6542 38 1 2.8897 3.8619 0.2772 39 1 3.3033 5.0155 2.4113 40 1 3.2542 3.3273 5.6704 41 1 3.7659 4.7814 4.7803 42 1 2.1624 6.6002 4.4465 43 1 1.3376 5.4282 3.3912 44 1 -0.7262 5.6566 4.7390 45 1 -0.2053 7.2395 4.1122 46 1 -0.8496 7.3561 6.5228 47 1 0.8655 7.7641 6.2732 48 1 -2.3298 7.4329 9.0161 49 1 2.1556 4.4305 7.3706 50 1 2.6340 6.0250 6.7408 51 1 2.0764 1.5312 4.5440 52 1 1.6651 0.3662 2.4156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:14 Heat of formation + Delta-G solvation = 22.680291 kcal Electronic energy + Delta-G solvation = -26746.403863 eV Core-core repulsion = 23324.019391 eV Total energy + Delta-G solvation = -3422.384472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85835 -38.24499 -36.75123 -33.77305 -32.72687 -32.04533 -30.67995 -30.50228 -29.68518 -28.23828 -25.29693 -24.85906 -24.22807 -22.63994 -22.03328 -21.59524 -20.94179 -19.85685 -18.48935 -17.53300 -16.31861 -16.26024 -15.28017 -14.93341 -14.87186 -14.70230 -14.36589 -14.19085 -13.94883 -13.62527 -13.44809 -13.20254 -13.09531 -12.87241 -12.64780 -12.52011 -12.35421 -12.21806 -12.07432 -11.97091 -11.66602 -11.37423 -11.24943 -11.16145 -11.03456 -10.88775 -10.62151 -10.57905 -10.50021 -10.05518 -9.76826 -9.66024 -9.38553 -8.96032 -8.70784 -8.63044 -8.23868 -7.55325 -7.16686 -5.91678 -3.97766 1.62440 1.74733 2.97810 3.35675 3.40207 3.42677 3.98360 4.47524 4.59619 4.67055 4.83853 4.86716 4.99936 5.06937 5.13015 5.16059 5.18337 5.24379 5.30974 5.38095 5.47146 5.55903 5.56476 5.63539 5.64616 5.79821 5.81807 5.89728 5.90569 5.96823 6.03603 6.06569 6.20255 6.22413 6.37011 6.40954 6.49799 6.58354 6.61840 6.82652 6.84626 6.98230 7.00066 7.07011 7.24685 7.31231 7.48870 7.53693 7.78995 7.82568 7.93963 8.16419 8.24951 8.55104 9.06391 9.66037 11.14253 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.002480 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.921379 B =11289.301697 C =11432.991692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.121 3.879 3 N -0.632 5.632 4 C 0.121 3.879 5 C -0.172 4.172 6 C 0.210 3.790 7 C -0.198 4.198 8 C -0.067 4.067 9 C -0.120 4.120 10 C 0.097 3.903 11 N -0.532 5.532 12 C 0.062 3.938 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.068 3.932 26 C -0.052 4.052 27 C -0.197 4.197 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.028 0.972 48 H 0.259 0.741 49 H 0.058 0.942 50 H 0.017 0.983 51 H 0.121 0.879 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -12.006 -20.532 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.002 4.002 3 N -0.344 5.344 4 C -0.003 4.003 5 C -0.231 4.231 6 C 0.110 3.890 7 C -0.220 4.220 8 C -0.087 4.087 9 C -0.123 4.123 10 C -0.030 4.030 11 N -0.257 5.257 12 C -0.066 4.066 13 C -0.154 4.154 14 C -0.148 4.148 15 C 0.037 3.963 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.071 0.929 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.059 4.059 26 C -0.071 4.071 27 C -0.220 4.220 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.035 0.965 51 H 0.139 0.861 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.548 -12.359 -20.654 25.225 hybrid contribution 0.662 1.026 0.892 1.512 sum 8.210 -11.332 -19.762 24.215 Atomic orbital electron populations 1.22240 0.96507 1.01786 1.02675 1.21319 0.93910 0.82700 1.02259 1.46534 1.72091 1.13005 1.02749 1.21315 0.95944 0.97825 0.85193 1.22232 0.97651 1.01880 1.01289 1.17751 0.94244 0.91493 0.85520 1.20560 1.09217 0.94092 0.98160 1.20785 0.97617 0.98664 0.91596 1.19592 1.03544 0.94719 0.94420 1.20930 0.91565 0.96822 0.93702 1.62016 1.32094 1.28243 1.03316 1.22071 0.97232 0.91597 0.95690 1.21663 0.95872 0.98863 0.99044 1.21646 1.03139 0.98671 0.91362 1.18649 0.90847 0.93725 0.93088 0.94805 1.21126 0.96429 1.38682 0.99051 0.92939 1.24935 0.95317 0.95998 0.97608 1.69888 1.00973 1.44854 1.37036 0.86700 0.77116 0.79242 0.85148 1.20419 1.21363 1.20329 1.22316 1.00238 0.97029 0.86328 1.20771 0.95193 0.93965 0.97162 1.20622 1.09718 1.00497 0.91125 0.92006 0.91955 0.92730 0.91349 0.90740 0.91268 0.90731 0.92195 0.92742 0.92036 0.86556 0.86713 0.90719 0.95191 0.96318 0.91912 0.92222 0.93780 0.89254 0.95272 0.93058 0.92358 0.96456 0.86146 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.12 0.94 5.88 -4.04 -0.02 0.92 16 3 N -0.63 -5.99 2.61 -171.75 -0.45 -6.44 16 4 C 0.12 0.92 5.88 -4.04 -0.02 0.90 16 5 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 6 C 0.21 2.51 6.55 -83.79 -0.55 1.96 16 7 C -0.20 -2.42 9.21 -39.38 -0.36 -2.79 16 8 C -0.07 -0.91 7.86 -39.61 -0.31 -1.22 16 9 C -0.12 -1.77 4.89 -104.59 -0.51 -2.28 16 10 C 0.10 1.56 5.12 -4.97 -0.03 1.54 16 11 N -0.53 -10.26 4.65 -236.11 -1.10 -11.35 16 12 C 0.06 1.16 5.15 -3.84 -0.02 1.14 16 13 C -0.12 -2.40 6.09 -26.65 -0.16 -2.57 16 14 C -0.11 -2.69 5.03 -26.60 -0.13 -2.82 16 15 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 16 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.51 -14.33 8.56 -34.44 -0.29 -14.62 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.78 11.36 55.43 0.63 -25.15 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.07 1.48 4.68 -3.84 -0.02 1.46 16 26 C -0.05 -0.72 9.69 -39.61 -0.38 -1.10 16 27 C -0.20 -2.46 9.21 -39.38 -0.36 -2.82 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.43 8.07 -51.92 -0.42 0.01 16 32 H 0.07 0.58 6.19 -51.93 -0.32 0.26 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.07 0.59 6.19 -51.93 -0.32 0.27 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.12 1.22 6.14 -52.49 -0.32 0.90 16 39 H 0.11 1.46 7.95 -52.49 -0.42 1.04 16 40 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 41 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 1.08 5.75 -51.93 -0.30 0.78 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 52 H 0.12 1.27 6.14 -52.49 -0.32 0.94 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -29.48 397.82 -12.11 -41.59 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -9.45 Total: 0.02 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.72 Total: -21.17 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.92 Total: -42.95 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.48 -12.11 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.272 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds