Wall clock time and date at job start Tue Mar 31 2020 11:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47247 * 2 1 4 4 C 1.46499 * 119.99997 * 270.00574 * 3 2 1 5 5 C 1.52999 * 109.46832 * 269.99716 * 4 3 2 6 6 C 1.39671 * 119.99905 * 89.99779 * 3 2 1 7 7 C 1.38916 * 120.07350 * 180.02562 * 6 3 2 8 8 C 1.38105 * 119.92118 * 180.02562 * 7 6 3 9 9 C 1.38283 * 120.07717 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.92453 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.47317 * 89.99505 * 10 9 8 12 12 C 1.46843 * 111.00178 * 294.21072 * 11 10 9 13 13 C 1.53032 * 109.52571 * 174.15839 * 12 11 10 14 14 C 1.53124 * 109.27716 * 59.18061 * 13 12 11 15 15 C 1.53121 * 109.15774 * 302.34601 * 14 13 12 16 16 H 1.09001 * 109.50746 * 297.71327 * 15 14 13 17 17 C 1.50700 * 109.53632 * 177.61434 * 15 14 13 18 18 H 1.07994 * 120.00332 * 240.18297 * 17 15 14 19 19 C 1.37881 * 119.99887 * 60.17375 * 17 15 14 20 20 N 1.31516 * 120.00056 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99911 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47097 * 60.00587 * 21 19 17 23 23 H 1.48502 * 109.47112 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47537 * 300.00212 * 21 19 17 25 25 C 1.46844 * 110.99951 * 169.99777 * 11 10 9 26 26 C 1.38285 * 120.14977 * 0.02562 * 9 8 7 27 27 C 1.38107 * 120.07577 * 0.02562 * 26 9 8 28 28 H 1.09003 * 109.46584 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47037 * 299.99420 * 1 2 3 30 30 H 1.08999 * 109.47106 * 60.00349 * 1 2 3 31 31 H 1.09007 * 109.47216 * 240.00433 * 2 1 3 32 32 H 1.08998 * 109.47549 * 120.00283 * 2 1 3 33 33 H 1.09005 * 109.47301 * 29.99236 * 4 3 2 34 34 H 1.08996 * 109.47218 * 149.99610 * 4 3 2 35 35 H 1.08996 * 109.47037 * 299.99854 * 5 4 3 36 36 H 1.08996 * 109.47306 * 59.99947 * 5 4 3 37 37 H 1.09007 * 109.46805 * 180.02562 * 5 4 3 38 38 H 1.07995 * 120.03323 * 0.27426 * 7 6 3 39 39 H 1.07995 * 119.95674 * 179.97438 * 8 7 6 40 40 H 1.09005 * 109.47080 * 209.99805 * 10 9 8 41 41 H 1.09000 * 109.46716 * 329.99380 * 10 9 8 42 42 H 1.09003 * 109.46397 * 294.17678 * 12 11 10 43 43 H 1.09001 * 109.46202 * 54.14487 * 12 11 10 44 44 H 1.09006 * 109.50401 * 299.24303 * 13 12 11 45 45 H 1.08999 * 109.54082 * 179.13995 * 13 12 11 46 46 H 1.08997 * 109.52503 * 182.44531 * 14 13 12 47 47 H 1.09001 * 109.57611 * 62.27938 * 14 13 12 48 48 H 0.96996 * 120.00140 * 179.97438 * 20 19 17 49 49 H 1.09005 * 109.46374 * 305.86079 * 25 11 10 50 50 H 1.09006 * 109.45771 * 65.82373 * 25 11 10 51 51 H 1.08001 * 119.96315 * 179.97438 * 26 9 8 52 52 H 1.08001 * 120.03602 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7104 6 6 2.2511 2.0396 1.2096 7 6 2.7137 3.3495 1.2114 8 6 2.9433 3.9974 2.4093 9 6 2.7137 3.3435 3.6059 10 6 2.9648 4.0539 4.9110 11 7 1.7402 4.7450 5.3360 12 6 1.3959 5.8264 4.4041 13 6 0.0434 6.4267 4.7945 14 6 0.1239 6.9667 6.2251 15 6 0.5313 5.8315 7.1685 16 1 -0.2305 5.0522 7.1504 17 6 0.6702 6.3668 8.5704 18 1 1.6182 6.2983 9.0831 19 6 -0.4131 6.9440 9.1984 20 7 -1.5677 7.0271 8.5742 21 14 -0.2411 7.6068 10.9364 22 1 0.7958 8.6696 10.9605 23 1 -1.5402 8.1720 11.3814 24 1 0.1577 6.5054 11.8490 25 6 1.8696 5.2485 6.7093 26 6 2.2543 2.0392 3.6077 27 6 2.0236 1.3850 2.4134 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6877 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 4.3882 2.2156 -0.9508 36 1 3.8744 0.7623 -1.8408 37 1 3.8891 2.3457 -2.6542 38 1 2.8897 3.8619 0.2772 39 1 3.3033 5.0155 2.4113 40 1 3.2542 3.3273 5.6704 41 1 3.7659 4.7814 4.7803 42 1 2.1624 6.6002 4.4465 43 1 1.3376 5.4282 3.3912 44 1 -0.7262 5.6566 4.7390 45 1 -0.2053 7.2395 4.1122 46 1 -0.8496 7.3561 6.5228 47 1 0.8655 7.7641 6.2732 48 1 -2.3298 7.4329 9.0161 49 1 2.1556 4.4305 7.3706 50 1 2.6340 6.0250 6.7408 51 1 2.0764 1.5312 4.5440 52 1 1.6651 0.3662 2.4156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:13 Heat of formation + Delta-G solvation = 8.859646 kcal Electronic energy + Delta-G solvation = -26747.003171 eV Core-core repulsion = 23324.019391 eV Total energy + Delta-G solvation = -3422.983780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83778 -39.68451 -37.77944 -35.53328 -33.73240 -33.37033 -31.94578 -31.54348 -31.29208 -29.19973 -26.90010 -26.47650 -24.92698 -23.87450 -23.36098 -22.79027 -22.33601 -20.77799 -20.31451 -18.48268 -18.24828 -17.03000 -16.84410 -16.35233 -16.16614 -15.81405 -15.57142 -15.23161 -14.90942 -14.86677 -14.71709 -14.42205 -14.36523 -14.13146 -13.92850 -13.88439 -13.37082 -13.27790 -13.15046 -12.90598 -12.83098 -12.76132 -12.64082 -12.52455 -12.44603 -12.06337 -12.02539 -11.82253 -11.81093 -11.69738 -11.41080 -11.35590 -10.86094 -10.66829 -10.53075 -10.35919 -9.70573 -9.07019 -8.07952 -8.03112 -6.20668 0.63850 0.73595 1.42115 1.43815 1.51344 2.26689 2.44020 2.91252 3.20357 3.41779 3.92762 3.98523 4.04716 4.19310 4.22122 4.25412 4.28889 4.30396 4.43090 4.46684 4.54038 4.56757 4.57992 4.63061 4.65740 4.72100 4.73671 4.79173 4.84235 4.91793 4.96607 5.00381 5.01591 5.04433 5.07723 5.12931 5.20762 5.27768 5.32648 5.39253 5.40673 5.48686 5.53284 5.59959 5.64656 5.94196 5.99320 6.04028 6.15196 6.24521 6.41186 6.49397 6.50016 6.67837 6.92143 7.46978 8.98398 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.002480 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.921379 B =11289.301697 C =11432.991692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.631 5.631 4 C 0.115 3.885 5 C -0.165 4.165 6 C 0.212 3.788 7 C -0.203 4.203 8 C -0.072 4.072 9 C -0.141 4.141 10 C 0.102 3.898 11 N -0.543 5.543 12 C 0.070 3.930 13 C -0.110 4.110 14 C -0.103 4.103 15 C 0.054 3.946 16 H -0.006 1.006 17 C -0.536 4.536 18 H 0.052 0.948 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.955 3.045 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.082 3.918 26 C -0.063 4.063 27 C -0.205 4.205 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.024 0.976 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.260 0.740 49 H 0.057 0.943 50 H 0.015 0.985 51 H 0.118 0.882 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -12.613 -22.438 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.341 5.341 4 C -0.007 4.007 5 C -0.224 4.224 6 C 0.110 3.890 7 C -0.225 4.225 8 C -0.091 4.091 9 C -0.144 4.144 10 C -0.025 4.025 11 N -0.267 5.267 12 C -0.058 4.058 13 C -0.148 4.148 14 C -0.141 4.141 15 C 0.035 3.965 16 H 0.013 0.987 17 C -0.575 4.575 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.046 4.046 26 C -0.082 4.082 27 C -0.227 4.227 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.042 0.958 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.033 0.967 51 H 0.136 0.864 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.578 -12.988 -22.594 27.436 hybrid contribution 0.315 1.126 1.369 1.800 sum 8.893 -11.862 -21.225 25.890 Atomic orbital electron populations 1.22184 0.96422 1.02499 1.01550 1.21478 0.93888 0.81919 1.03279 1.46781 1.71189 1.13615 1.02564 1.21493 0.96894 0.97690 0.84670 1.22163 0.96566 1.02125 1.01511 1.17907 0.93212 0.91564 0.86361 1.20754 1.08945 0.94326 0.98458 1.20894 0.97536 0.99050 0.91596 1.19481 1.05725 0.95166 0.94008 1.20918 0.90132 0.96695 0.94705 1.61955 1.34350 1.28333 1.02097 1.22006 0.95850 0.91590 0.96357 1.21578 0.97002 0.99201 0.96995 1.21454 1.00937 0.98036 0.93651 1.18568 0.91803 0.93069 0.93045 0.98736 1.21501 0.96585 1.38999 1.00395 0.92963 1.25745 0.94971 0.96230 1.01643 1.70040 1.01586 1.45385 1.38583 0.85660 0.77255 0.78759 0.80254 1.19629 1.20954 1.19619 1.21991 0.97696 0.96717 0.88182 1.20865 0.95531 0.94037 0.97776 1.20767 1.09796 1.01173 0.90965 0.90453 0.94217 0.92599 0.89221 0.90839 0.89563 0.90968 0.93716 0.92534 0.90469 0.84852 0.86017 0.90544 0.94507 0.95756 0.89894 0.93612 0.91446 0.92445 0.95833 0.93083 0.92447 0.96666 0.86369 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 71.98 0.74 -1.52 16 2 C 0.12 1.53 5.88 86.38 0.51 2.04 16 3 N -0.63 -10.53 2.61 -697.29 -1.82 -12.35 16 4 C 0.12 1.44 5.88 86.38 0.51 1.95 16 5 C -0.17 -1.83 10.24 71.98 0.74 -1.09 16 6 C 0.21 4.70 6.55 38.22 0.25 4.95 16 7 C -0.20 -4.59 9.21 22.40 0.21 -4.38 16 8 C -0.07 -1.82 7.86 22.25 0.17 -1.65 16 9 C -0.14 -4.03 4.89 -19.84 -0.10 -4.13 16 10 C 0.10 3.22 5.12 85.56 0.44 3.66 16 11 N -0.54 -20.87 4.65 -900.93 -4.19 -25.06 16 12 C 0.07 2.53 5.15 86.32 0.44 2.98 16 13 C -0.11 -4.53 6.09 30.65 0.19 -4.35 16 14 C -0.10 -5.15 5.03 30.68 0.15 -4.99 16 15 C 0.05 2.86 2.26 -11.49 -0.03 2.84 16 16 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 17 C -0.54 -30.60 8.56 25.60 0.22 -30.38 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 19 C 0.01 0.73 5.30 84.66 0.45 1.18 16 20 N -0.92 -54.66 11.36 21.45 0.24 -54.42 16 21 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 C 0.08 3.62 4.68 86.33 0.40 4.03 16 26 C -0.06 -1.72 9.69 22.25 0.22 -1.50 16 27 C -0.20 -4.89 9.21 22.40 0.21 -4.69 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.83 8.07 -2.38 -0.02 0.81 16 32 H 0.07 0.99 6.19 -2.39 -0.01 0.97 16 33 H 0.09 0.82 8.07 -2.38 -0.02 0.80 16 34 H 0.07 0.96 6.19 -2.39 -0.01 0.94 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.13 2.49 6.14 -2.91 -0.02 2.47 16 39 H 0.12 2.86 7.95 -2.91 -0.02 2.83 16 40 H 0.08 2.33 7.93 -2.38 -0.02 2.32 16 41 H 0.04 1.11 8.07 -2.39 -0.02 1.09 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 2.72 5.75 -2.39 -0.01 2.70 16 44 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.06 3.24 6.17 -2.39 -0.01 3.22 16 47 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 49 H 0.06 2.51 8.02 -2.38 -0.02 2.49 16 50 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 52 H 0.13 2.67 6.14 -2.91 -0.02 2.65 16 Total: -1.00 -64.53 397.82 2.84 -61.69 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.86 Total: 18.53 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 5.72 Total: -35.05 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -5.76 Total: -91.82 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.53 2.84 -61.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.554 kcal (2) G-P(sol) polarization free energy of solvation -64.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds