Wall clock time and date at job start Tue Mar 31 2020 10:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 111.00014 * 2 1 4 4 C 1.50700 * 109.46901 * 293.95705 * 3 2 1 5 5 C 1.38278 * 119.92783 * 89.99742 * 4 3 2 6 6 C 1.38103 * 120.07651 * 179.97438 * 5 4 3 7 7 C 1.38912 * 119.92335 * 0.02562 * 6 5 4 8 8 N 1.39682 * 120.07292 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.46499 * 119.99728 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.46992 * 90.00127 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38910 * 119.85286 * 0.25017 * 7 6 5 20 20 C 1.38108 * 119.92181 * 359.49557 * 19 7 6 21 21 C 1.46900 * 110.99932 * 123.95490 * 2 1 3 22 22 C 1.52993 * 109.47158 * 66.05098 * 21 2 1 23 23 H 1.08997 * 115.55471 * 29.32727 * 22 21 2 24 24 C 1.53003 * 117.49494 * 243.62074 * 22 21 2 25 25 C 1.52999 * 117.49944 * 174.99840 * 22 21 2 26 26 C 1.52997 * 117.50232 * 214.97299 * 25 22 21 27 27 C 1.53002 * 117.49753 * 359.97438 * 25 22 21 28 28 H 1.08995 * 109.47280 * 60.00331 * 1 2 3 29 29 H 1.09004 * 109.46728 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47123 * 299.99943 * 1 2 3 31 31 H 1.08997 * 109.47207 * 173.95420 * 3 2 1 32 32 H 1.09002 * 109.46477 * 53.95303 * 3 2 1 33 33 H 1.08000 * 119.96441 * 0.02562 * 5 4 3 34 34 H 1.08004 * 120.03987 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46899 * 269.99483 * 9 8 7 36 36 H 1.08992 * 109.47334 * 29.99447 * 9 8 7 37 37 H 1.08994 * 109.46680 * 150.00071 * 9 8 7 38 38 H 1.09002 * 109.47391 * 330.00118 * 10 8 7 39 39 H 1.09001 * 109.46813 * 210.00174 * 10 8 7 40 40 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 41 41 H 1.08000 * 120.03665 * 179.72716 * 19 7 6 42 42 H 1.07997 * 119.96407 * 180.25717 * 20 19 7 43 43 H 1.09004 * 109.46527 * 186.04721 * 21 2 1 44 44 H 1.08991 * 109.47039 * 306.04156 * 21 2 1 45 45 H 1.08994 * 117.49895 * 359.97438 * 24 22 21 46 46 H 1.08997 * 117.49627 * 145.02438 * 24 22 21 47 47 H 1.09008 * 109.46979 * 60.00464 * 26 25 22 48 48 H 1.08997 * 109.47633 * 179.97438 * 26 25 22 49 49 H 1.09000 * 109.47510 * 300.00434 * 26 25 22 50 50 H 1.09002 * 109.47616 * 59.99817 * 27 25 22 51 51 H 1.09006 * 109.46999 * 179.97438 * 27 25 22 52 52 H 1.08999 * 109.46918 * 299.99436 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 6 0.4502 2.7489 -1.4062 6 6 0.1188 3.3697 -2.5945 7 6 0.9788 3.2881 -3.6823 8 7 0.6464 3.9144 -4.8859 9 6 -0.6101 4.6588 -5.0017 10 6 1.5549 3.8278 -6.0319 11 6 1.2073 2.6162 -6.8579 12 1 0.3911 1.9751 -6.5593 13 6 1.9308 2.3267 -7.9954 14 7 2.9243 3.1077 -8.3593 15 14 1.4995 0.8253 -9.0197 16 1 0.1005 0.9417 -9.5042 17 1 2.4204 0.7374 -10.1813 18 1 1.6350 -0.3972 -8.1876 19 6 2.1673 2.5776 -3.5724 20 6 2.4951 1.9635 -2.3796 21 6 1.9954 -0.7660 1.1376 22 6 1.6315 -2.2426 0.9703 23 1 1.5327 -2.5888 -0.0585 24 6 0.7061 -2.8651 2.0176 25 6 2.1920 -3.2290 1.9968 26 6 2.5703 -4.6260 1.5008 27 6 3.0740 -2.6633 3.1117 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 0.1082 32 1 1.5610 1.9273 0.8310 33 1 -0.2178 2.8123 -0.5600 34 1 -0.8080 3.9180 -2.6779 35 1 -1.3991 3.9888 -5.3433 36 1 -0.8792 5.0709 -4.0292 37 1 -0.4868 5.4703 -5.7187 38 1 2.5816 3.7426 -5.6761 39 1 1.4554 4.7249 -6.6430 40 1 3.4335 2.9039 -9.1594 41 1 2.8360 2.5085 -4.4177 42 1 3.4209 1.4144 -2.2921 43 1 3.0797 -0.6610 1.1755 44 1 1.5612 -0.3872 2.0627 45 1 0.3568 -2.2228 2.8260 46 1 -0.0019 -3.6210 1.6779 47 1 3.3386 -4.5430 0.7319 48 1 2.9527 -5.2162 2.3336 49 1 1.6897 -5.1142 1.0832 50 1 2.5053 -1.9364 3.6915 51 1 3.3992 -3.4737 3.7642 52 1 3.9457 -2.1770 2.6739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827941091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:42 Heat of formation + Delta-G solvation = 53.279785 kcal Electronic energy + Delta-G solvation = -26138.369934 eV Core-core repulsion = 22717.312355 eV Total energy + Delta-G solvation = -3421.057579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.45470 -38.85907 -36.92144 -35.18206 -32.69505 -30.66255 -30.43102 -29.34761 -28.09407 -27.81330 -27.17761 -26.49237 -24.62763 -22.94928 -21.83961 -21.34512 -20.81024 -19.54446 -18.79372 -16.61611 -16.43024 -15.97166 -15.51253 -15.27829 -14.89893 -14.60772 -14.26305 -14.12076 -13.89859 -13.76472 -13.62046 -13.14885 -13.01591 -12.86403 -12.72514 -12.61533 -12.24694 -12.17433 -12.09810 -11.75960 -11.60300 -11.54768 -11.46564 -11.42024 -11.21785 -11.21025 -10.91202 -10.65706 -10.64410 -10.22587 -9.96732 -9.88022 -9.74343 -9.67413 -8.81405 -8.48010 -8.25546 -8.18329 -6.43748 -5.99416 -4.14935 2.14652 2.24507 3.30267 3.34282 3.38172 3.48339 3.97691 4.17729 4.43565 4.49795 4.54148 4.62759 4.76126 4.85371 5.17996 5.21206 5.23618 5.26394 5.34282 5.37798 5.46568 5.49915 5.58029 5.59191 5.60847 5.65020 5.66610 5.69197 5.73871 5.79310 5.80610 5.87588 5.90105 6.04192 6.05371 6.12870 6.14458 6.18777 6.30865 6.41403 6.46624 6.67082 6.95269 7.03922 7.10614 7.19662 7.26252 7.30140 7.40903 7.63962 7.83265 8.17936 8.29150 8.51043 8.93708 9.51721 10.97855 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002723 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.355159 B =10281.617218 C =11552.628488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.534 5.534 3 C 0.111 3.889 4 C -0.166 4.166 5 C -0.067 4.067 6 C -0.222 4.222 7 C 0.241 3.759 8 N -0.616 5.616 9 C 0.101 3.899 10 C 0.250 3.750 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.896 5.896 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.188 4.188 20 C -0.051 4.051 21 C 0.088 3.912 22 C -0.133 4.133 23 H 0.113 0.887 24 C -0.176 4.176 25 C -0.129 4.129 26 C -0.114 4.114 27 C -0.115 4.115 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.131 0.869 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.030 0.970 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -7.247 21.376 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.257 5.257 3 C -0.015 4.015 4 C -0.169 4.169 5 C -0.087 4.087 6 C -0.245 4.245 7 C 0.134 3.866 8 N -0.322 5.322 9 C -0.043 4.043 10 C 0.130 3.870 11 C -0.569 4.569 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.210 4.210 20 C -0.071 4.071 21 C -0.040 4.040 22 C -0.151 4.151 23 H 0.131 0.869 24 C -0.213 4.213 25 C -0.129 4.129 26 C -0.171 4.171 27 C -0.172 4.172 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.149 0.851 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.328 -7.322 20.577 21.965 hybrid contribution -0.654 -0.482 -0.073 0.816 sum -2.982 -7.805 20.503 22.140 Atomic orbital electron populations 1.22404 0.87453 1.01649 1.00707 1.61987 1.08106 1.13748 1.41904 1.20828 0.99371 0.86948 0.94397 1.19113 0.97223 1.04843 0.95717 1.20497 0.95423 0.96493 0.96263 1.20512 1.01431 1.08898 0.93690 1.17942 0.92645 0.90300 0.85704 1.47088 1.21236 1.53340 1.10562 1.21448 0.86931 0.95567 1.00395 1.19289 0.88827 0.96978 0.81915 1.21538 1.16564 1.10318 1.08507 0.92346 1.24955 0.94876 0.96856 0.97369 1.69919 1.20248 1.37940 1.25400 0.86584 0.78221 0.83256 0.79574 1.20271 1.21200 1.20035 1.20889 0.98132 1.03117 0.98879 1.20626 0.98200 0.96440 0.91808 1.21629 0.99811 0.91189 0.91388 1.22460 1.03159 0.93400 0.96117 0.86936 1.23327 0.92455 1.03632 1.01905 1.21595 0.95340 0.96295 0.99707 1.21344 1.01463 0.93482 1.00859 1.21331 0.98977 1.00445 0.96419 0.90577 0.91739 0.96423 0.90836 0.95104 0.87837 0.87019 0.94150 0.92871 0.92095 0.94646 0.95261 0.92612 0.85102 0.87084 0.90637 0.95190 0.89230 0.89058 0.92078 0.92344 0.92540 0.92633 0.92340 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 8.97 60.06 0.54 0.85 16 2 N -0.53 -6.76 4.75 -244.37 -1.16 -7.92 16 3 C 0.11 1.44 5.12 -4.97 -0.03 1.41 16 4 C -0.17 -2.61 4.89 -104.59 -0.51 -3.12 16 5 C -0.07 -1.06 7.95 -39.62 -0.32 -1.37 16 6 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 7 C 0.24 4.93 6.55 -83.78 -0.55 4.38 16 8 N -0.62 -13.34 2.99 -181.00 -0.54 -13.88 16 9 C 0.10 1.79 10.23 59.85 0.61 2.40 16 10 C 0.25 6.32 4.95 -5.19 -0.03 6.29 16 11 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 15 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.19 -3.86 9.20 -39.38 -0.36 -4.22 16 20 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 21 C 0.09 0.92 4.32 -3.83 -0.02 0.90 16 22 C -0.13 -1.31 4.46 -90.62 -0.40 -1.72 16 23 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 24 C -0.18 -1.52 9.47 -26.73 -0.25 -1.77 16 25 C -0.13 -1.09 2.70 -154.51 -0.42 -1.51 16 26 C -0.11 -0.89 9.85 37.16 0.37 -0.52 16 27 C -0.11 -0.85 8.86 37.16 0.33 -0.52 16 28 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 29 H 0.06 0.74 7.17 -51.93 -0.37 0.37 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 32 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.10 1.38 8.03 -52.49 -0.42 0.96 16 34 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.80 6.20 -51.93 -0.32 0.48 16 37 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 38 H 0.04 0.95 6.21 -51.93 -0.32 0.62 16 39 H 0.03 0.77 7.89 -51.93 -0.41 0.37 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.97 6.15 -52.49 -0.32 2.65 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.08 0.77 7.56 -51.93 -0.39 0.38 16 44 H 0.03 0.30 7.85 -51.93 -0.41 -0.11 16 45 H 0.09 0.74 7.94 -51.93 -0.41 0.33 16 46 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 47 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 48 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 49 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 50 H 0.05 0.40 7.90 -51.93 -0.41 -0.01 16 51 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 52 H 0.06 0.45 7.83 -51.93 -0.41 0.05 16 LS Contribution 408.55 15.07 6.16 6.16 Total: -1.00 -28.86 408.55 -11.42 -40.28 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -9.39 Total: 1.36 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.20 Total: -17.41 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.97 Total: -46.93 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.86 -11.42 -40.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827941091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.559 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds