Wall clock time and date at job start Tue Mar 31 2020 10:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 111.00014 * 2 1 4 4 C 1.50700 * 109.46901 * 293.95705 * 3 2 1 5 5 C 1.38278 * 119.92783 * 89.99742 * 4 3 2 6 6 C 1.38103 * 120.07651 * 179.97438 * 5 4 3 7 7 C 1.38912 * 119.92335 * 0.02562 * 6 5 4 8 8 N 1.39682 * 120.07292 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.46499 * 119.99728 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.46992 * 90.00127 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38910 * 119.85286 * 0.25017 * 7 6 5 20 20 C 1.38108 * 119.92181 * 359.49557 * 19 7 6 21 21 C 1.46900 * 110.99932 * 123.95490 * 2 1 3 22 22 C 1.52993 * 109.47158 * 66.05098 * 21 2 1 23 23 H 1.08997 * 115.55471 * 29.32727 * 22 21 2 24 24 C 1.53003 * 117.49494 * 243.62074 * 22 21 2 25 25 C 1.52999 * 117.49944 * 174.99840 * 22 21 2 26 26 C 1.52997 * 117.50232 * 214.97299 * 25 22 21 27 27 C 1.53002 * 117.49753 * 359.97438 * 25 22 21 28 28 H 1.08995 * 109.47280 * 60.00331 * 1 2 3 29 29 H 1.09004 * 109.46728 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47123 * 299.99943 * 1 2 3 31 31 H 1.08997 * 109.47207 * 173.95420 * 3 2 1 32 32 H 1.09002 * 109.46477 * 53.95303 * 3 2 1 33 33 H 1.08000 * 119.96441 * 0.02562 * 5 4 3 34 34 H 1.08004 * 120.03987 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46899 * 269.99483 * 9 8 7 36 36 H 1.08992 * 109.47334 * 29.99447 * 9 8 7 37 37 H 1.08994 * 109.46680 * 150.00071 * 9 8 7 38 38 H 1.09002 * 109.47391 * 330.00118 * 10 8 7 39 39 H 1.09001 * 109.46813 * 210.00174 * 10 8 7 40 40 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 41 41 H 1.08000 * 120.03665 * 179.72716 * 19 7 6 42 42 H 1.07997 * 119.96407 * 180.25717 * 20 19 7 43 43 H 1.09004 * 109.46527 * 186.04721 * 21 2 1 44 44 H 1.08991 * 109.47039 * 306.04156 * 21 2 1 45 45 H 1.08994 * 117.49895 * 359.97438 * 24 22 21 46 46 H 1.08997 * 117.49627 * 145.02438 * 24 22 21 47 47 H 1.09008 * 109.46979 * 60.00464 * 26 25 22 48 48 H 1.08997 * 109.47633 * 179.97438 * 26 25 22 49 49 H 1.09000 * 109.47510 * 300.00434 * 26 25 22 50 50 H 1.09002 * 109.47616 * 59.99817 * 27 25 22 51 51 H 1.09006 * 109.46999 * 179.97438 * 27 25 22 52 52 H 1.08999 * 109.46918 * 299.99436 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 6 0.4502 2.7489 -1.4062 6 6 0.1188 3.3697 -2.5945 7 6 0.9788 3.2881 -3.6823 8 7 0.6464 3.9144 -4.8859 9 6 -0.6101 4.6588 -5.0017 10 6 1.5549 3.8278 -6.0319 11 6 1.2073 2.6162 -6.8579 12 1 0.3911 1.9751 -6.5593 13 6 1.9308 2.3267 -7.9954 14 7 2.9243 3.1077 -8.3593 15 14 1.4995 0.8253 -9.0197 16 1 0.1005 0.9417 -9.5042 17 1 2.4204 0.7374 -10.1813 18 1 1.6350 -0.3972 -8.1876 19 6 2.1673 2.5776 -3.5724 20 6 2.4951 1.9635 -2.3796 21 6 1.9954 -0.7660 1.1376 22 6 1.6315 -2.2426 0.9703 23 1 1.5327 -2.5888 -0.0585 24 6 0.7061 -2.8651 2.0176 25 6 2.1920 -3.2290 1.9968 26 6 2.5703 -4.6260 1.5008 27 6 3.0740 -2.6633 3.1117 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 0.1082 32 1 1.5610 1.9273 0.8310 33 1 -0.2178 2.8123 -0.5600 34 1 -0.8080 3.9180 -2.6779 35 1 -1.3991 3.9888 -5.3433 36 1 -0.8792 5.0709 -4.0292 37 1 -0.4868 5.4703 -5.7187 38 1 2.5816 3.7426 -5.6761 39 1 1.4554 4.7249 -6.6430 40 1 3.4335 2.9039 -9.1594 41 1 2.8360 2.5085 -4.4177 42 1 3.4209 1.4144 -2.2921 43 1 3.0797 -0.6610 1.1755 44 1 1.5612 -0.3872 2.0627 45 1 0.3568 -2.2228 2.8260 46 1 -0.0019 -3.6210 1.6779 47 1 3.3386 -4.5430 0.7319 48 1 2.9527 -5.2162 2.3336 49 1 1.6897 -5.1142 1.0832 50 1 2.5053 -1.9364 3.6915 51 1 3.3992 -3.4737 3.7642 52 1 3.9457 -2.1770 2.6739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827941091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:41 Heat of formation + Delta-G solvation = 39.783362 kcal Electronic energy + Delta-G solvation = -26138.955183 eV Core-core repulsion = 22717.312355 eV Total energy + Delta-G solvation = -3421.642827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61401 -39.86414 -38.08989 -36.56361 -34.74068 -31.90321 -31.84236 -30.21291 -29.65167 -28.74444 -28.07577 -27.62421 -26.23563 -24.46057 -23.13848 -22.69336 -21.62126 -20.96875 -19.50152 -18.64583 -18.06547 -16.96493 -16.79250 -16.47498 -16.13845 -16.00213 -15.47888 -15.33095 -15.06747 -14.85866 -14.51540 -14.47694 -14.31576 -14.17967 -13.97988 -13.60054 -13.30082 -13.19134 -13.15017 -13.05986 -12.87916 -12.84686 -12.68317 -12.56801 -12.54336 -12.44290 -12.27141 -12.15873 -11.95833 -11.76830 -11.75319 -11.38716 -10.66158 -10.63945 -10.44238 -10.32957 -9.64202 -9.15162 -8.35851 -7.79364 -6.37228 0.72399 0.84764 1.36296 1.38686 1.46727 2.34193 2.63876 2.75655 2.98002 3.06033 3.37102 3.81091 3.87846 4.00254 4.07804 4.10623 4.22827 4.24608 4.36933 4.41654 4.44531 4.52254 4.62783 4.67647 4.68660 4.72624 4.78937 4.80944 4.87008 4.88334 4.92608 4.94055 4.97996 5.02158 5.07556 5.09961 5.12179 5.13057 5.17184 5.19736 5.31488 5.33919 5.36008 5.50701 5.59799 5.67656 5.70388 5.94042 6.07618 6.18445 6.23493 6.30289 6.50527 6.82875 6.94548 7.34419 8.83083 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002723 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.355159 B =10281.617218 C =11552.628488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.552 5.552 3 C 0.115 3.885 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.216 4.216 7 C 0.212 3.788 8 N -0.633 5.633 9 C 0.100 3.900 10 C 0.267 3.733 11 C -0.542 4.542 12 H 0.047 0.953 13 C 0.013 3.987 14 N -0.926 5.926 15 Si 0.960 3.040 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.274 1.274 19 C -0.216 4.216 20 C -0.056 4.056 21 C 0.094 3.906 22 C -0.146 4.146 23 H 0.092 0.908 24 C -0.169 4.169 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.114 4.114 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -8.325 24.104 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.276 5.276 3 C -0.012 4.012 4 C -0.155 4.155 5 C -0.078 4.078 6 C -0.239 4.239 7 C 0.107 3.893 8 N -0.341 5.341 9 C -0.043 4.043 10 C 0.145 3.855 11 C -0.580 4.580 12 H 0.065 0.935 13 C -0.186 4.186 14 N -0.566 5.566 15 Si 0.785 3.215 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.200 1.200 19 C -0.239 4.239 20 C -0.076 4.076 21 C -0.033 4.033 22 C -0.164 4.164 23 H 0.110 0.890 24 C -0.206 4.206 25 C -0.126 4.126 26 C -0.173 4.173 27 C -0.171 4.171 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.086 0.914 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.625 -8.404 23.343 25.073 hybrid contribution -0.235 -0.195 -0.783 0.840 sum -3.861 -8.599 22.560 24.450 Atomic orbital electron populations 1.22341 0.87165 1.01859 1.00454 1.61913 1.08544 1.13608 1.43522 1.20809 1.00140 0.87250 0.93024 1.19465 0.96404 1.03518 0.96154 1.20874 0.95566 0.94902 0.96503 1.20766 1.01397 1.08600 0.93131 1.18212 0.93476 0.91351 0.86242 1.46954 1.22016 1.55031 1.10052 1.21585 0.85207 0.95214 1.02283 1.18780 0.88622 0.95262 0.82804 1.21738 1.16239 1.10941 1.09123 0.93500 1.25768 0.94693 0.99677 0.98504 1.70024 1.21093 1.39544 1.25945 0.85580 0.78419 0.79479 0.78050 1.19340 1.20230 1.19975 1.20771 0.98537 1.05490 0.99100 1.20770 0.99146 0.96163 0.91481 1.21593 0.99814 0.91017 0.90872 1.22336 1.05060 0.93506 0.95543 0.88983 1.23357 0.92556 1.03418 1.01277 1.21715 0.95574 0.96085 0.99225 1.21369 1.01333 0.93427 1.01175 1.21349 0.98737 1.00879 0.96157 0.92390 0.91469 0.94860 0.90053 0.93202 0.84395 0.84954 0.94345 0.89718 0.92018 0.97170 0.97170 0.92361 0.88831 0.86195 0.90538 0.94121 0.88486 0.88874 0.92645 0.91138 0.92618 0.92194 0.91371 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.97 127.69 1.14 1.79 16 2 N -0.55 -12.68 4.75 -927.06 -4.41 -17.09 16 3 C 0.11 2.63 5.12 85.56 0.44 3.07 16 4 C -0.15 -4.51 4.89 -19.84 -0.10 -4.60 16 5 C -0.06 -1.69 7.95 22.25 0.18 -1.52 16 6 C -0.22 -7.21 9.21 22.40 0.21 -7.01 16 7 C 0.21 8.83 6.55 38.21 0.25 9.08 16 8 N -0.63 -28.28 2.99 -726.56 -2.17 -30.45 16 9 C 0.10 3.54 10.23 127.77 1.31 4.84 16 10 C 0.27 14.31 4.95 85.63 0.42 14.74 16 11 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 12 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 13 C 0.01 0.73 5.46 84.66 0.46 1.20 16 14 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 15 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 19 C -0.22 -9.33 9.20 22.40 0.21 -9.12 16 20 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 21 C 0.09 1.74 4.32 86.30 0.37 2.11 16 22 C -0.15 -2.65 4.46 -10.80 -0.05 -2.70 16 23 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 24 C -0.17 -2.54 9.47 30.60 0.29 -2.25 16 25 C -0.13 -1.88 2.70 -52.18 -0.14 -2.02 16 26 C -0.12 -1.63 9.85 71.98 0.71 -0.92 16 27 C -0.11 -1.42 8.86 71.98 0.64 -0.78 16 28 H 0.06 1.46 6.16 -2.39 -0.01 1.45 16 29 H 0.07 1.41 7.17 -2.39 -0.02 1.39 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.76 7.87 -2.39 -0.02 1.74 16 32 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 33 H 0.14 3.04 8.03 -2.91 -0.02 3.01 16 34 H 0.13 3.81 6.14 -2.91 -0.02 3.79 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 2.40 6.20 -2.39 -0.01 2.39 16 37 H 0.06 2.12 7.89 -2.39 -0.02 2.10 16 38 H 0.01 0.60 6.21 -2.39 -0.01 0.58 16 39 H 0.01 0.58 7.89 -2.39 -0.02 0.56 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.09 4.66 6.15 -2.91 -0.02 4.64 16 42 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.08 1.39 7.56 -2.39 -0.02 1.37 16 44 H 0.04 0.67 7.85 -2.39 -0.02 0.66 16 45 H 0.10 1.32 7.94 -2.39 -0.02 1.30 16 46 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 47 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 48 H 0.07 0.81 7.92 -2.39 -0.02 0.79 16 49 H 0.05 0.78 7.90 -2.39 -0.02 0.76 16 50 H 0.06 0.69 7.90 -2.39 -0.02 0.67 16 51 H 0.07 0.72 7.92 -2.38 -0.02 0.70 16 52 H 0.06 0.76 7.83 -2.39 -0.02 0.74 16 Total: -1.00 -64.28 408.55 3.39 -60.90 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.86 Total: 21.31 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 6.79 Total: -26.77 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -6.30 Total: -102.45 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.28 3.39 -60.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827941091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.679 kcal (2) G-P(sol) polarization free energy of solvation -64.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds